mRNA_L-elsbetiae_contig12814.2263.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12814.2263.1
Unique NamemRNA_L-elsbetiae_contig12814.2263.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12814.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12814contigL-elsbetiae_contig12814:2272..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7G0W2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1395
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12814.2263.1prot_L-elsbetiae_contig12814.2263.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12814 2501..2971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.5899324-UTR-L-elsbetiae_contig12814:2271..25001622815469.5899324-UTR-L-elsbetiae_contig12814:2271..2500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12814 2272..2500 +
1691682912.5895946-UTR-L-elsbetiae_contig12814:2271..25001691682912.5895946-UTR-L-elsbetiae_contig12814:2271..2500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12814 2272..2500 +
1622815469.6165156-UTR-L-elsbetiae_contig12814:2971..36661622815469.6165156-UTR-L-elsbetiae_contig12814:2971..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12814 2972..3666 +
1691682912.6113114-UTR-L-elsbetiae_contig12814:2971..36661691682912.6113114-UTR-L-elsbetiae_contig12814:2971..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12814 2972..3666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.6043007-CDS-L-elsbetiae_contig12814:2500..29711622815469.6043007-CDS-L-elsbetiae_contig12814:2500..2971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12814 2501..2971 +
1691682912.603515-CDS-L-elsbetiae_contig12814:2500..29711691682912.603515-CDS-L-elsbetiae_contig12814:2500..2971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12814 2501..2971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12814.2263.1

>prot_L-elsbetiae_contig12814.2263.1 ID=prot_L-elsbetiae_contig12814.2263.1|Name=mRNA_L-elsbetiae_contig12814.2263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MIAAGADVNTIDPCPEAGTALHLAAFNMAENVDTLVAAGASASAKGAVSG
GEPLHVAAERGQLGAAEARLRHDADINARTTPAGQTPLHLAAANVTGSTQ
GLVHHLLKGWANEALADSDGNKPVDVIGCSMLGGVPNEAAEQEVRELLQD
KKWGNR*
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mRNA from alignment at L-elsbetiae_contig12814:2272..3666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12814.2263.1 ID=mRNA_L-elsbetiae_contig12814.2263.1|Name=mRNA_L-elsbetiae_contig12814.2263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1395bp|location=Sequence derived from alignment at L-elsbetiae_contig12814:2272..3666+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAGAGCCGGTGGGTCATCAACAGCAGCAGATCAGGACGCCCGACAG
CGTCTGTGAGGCCGGACTCCAGGTAGGAGGCAAGCCGCCCTCTCACACCA
GCCACTCTCCTCTGCCGGTCCAGGCCGACCCTCGGATAGAAGCGCTTCAA
AGAGGTTGGCGATGCCATCGGGAGATCGGCGCTGAGCATCGCGGCCGAAA
AGCCCGGAGAGGGAAGGGCCCTGCATGCCATGATCGCCGCTGGAGCGGAC
GTTAACACGATCGACCCATGCCCCGAAGCCGGCACAGCCTTGCACTTGGC
TGCGTTCAACATGGCCGAAAATGTCGACACGCTAGTTGCCGCGGGGGCGT
CCGCGAGCGCGAAGGGCGCCGTCAGCGGGGGCGAGCCCCTCCACGTTGCC
GCGGAGCGCGGCCAGCTCGGGGCTGCTGAGGCCCGTCTGCGGCACGACGC
GGACATCAATGCGCGAACAACGCCGGCGGGCCAGACCCCGCTGCACCTTG
CAGCCGCGAACGTCACCGGCAGCACGCAGGGCCTGGTCCACCACCTGTTG
AAGGGATGGGCCAACGAGGCCCTCGCCGACTCCGACGGCAATAAACCCGT
GGATGTCATCGGCTGCAGCATGCTGGGCGGGGTTCCCAACGAGGCCGCTG
AGCAGGAAGTCCGAGAGCTTCTTCAAGACAAGAAATGGGGCAACCGGTAG
GGCTCACAGGGCTTGGCGTCTCCGTGGTCTCCTGGTCGTCGGCCGCCACA
AGGTACACCAACACATTATCCACTCAGCTGCCGGCGTCGGCGACACCGGC
ACATCTAAGCTGGCAAAAACCGACCCATGGCGTGGGGTACGCGGCAGCAC
CGGCGGCGATGTGGCGGGACAAGGCGGCGGGGCTGACGATGCGTGGATAC
ATGCGGTGGAATGGTTGTGGGAGCTGGACGTGGAGGGTGTTGTGCGCAAC
ATCGTGACTTTTCTGTGAATGAATGTCGAGACGGGCAATTCTTCTCCGTG
TGCAAAGTAATTAAGTGTGTTTCCAGCACTGGGGAGGCATACTAGTCACT
TCGATCGTGTGGCGCTGTTTGGACTCTTTTCAGAGAATTGGCATTTGTCA
GATTTTTTGCAGGGATGTATACATAGGTTCGGAACCGGTTCCAGGATGGC
CGGGTGGGTTCCGGGAAAATGCGCGGTTATTTTTCTCAACCTTCGGGCCC
CCTCGCCTGCGGGCCCCCTACCTACCCCCAGTTTTGGAGCTTGCAGTGGG
GCCTTAGGGCCGTGTTTCGTTTCATGAGTCATGATTTCCATCTCGGAGTA
CAAGTTTCTGGACGTGAGCGCCAGGCTCAGCTGGCAGCGCTTTGCTAACA
GCAAAAGTGTGTTTGTTTTCTGACTTTTCGGGCTCTTGGTTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12814:2272..3666+

>mRNA_L-elsbetiae_contig12814.2263.1 ID=mRNA_L-elsbetiae_contig12814.2263.1|Name=mRNA_L-elsbetiae_contig12814.2263.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig12814:2272..3666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGCCGCTGGAGCGGACGTTAACACGATCGACCCATGCCCCGAAGC
CGGCACAGCCTTGCACTTGGCTGCGTTCAACATGGCCGAAAATGTCGACA
CGCTAGTTGCCGCGGGGGCGTCCGCGAGCGCGAAGGGCGCCGTCAGCGGG
GGCGAGCCCCTCCACGTTGCCGCGGAGCGCGGCCAGCTCGGGGCTGCTGA
GGCCCGTCTGCGGCACGACGCGGACATCAATGCGCGAACAACGCCGGCGG
GCCAGACCCCGCTGCACCTTGCAGCCGCGAACGTCACCGGCAGCACGCAG
GGCCTGGTCCACCACCTGTTGAAGGGATGGGCCAACGAGGCCCTCGCCGA
CTCCGACGGCAATAAACCCGTGGATGTCATCGGCTGCAGCATGCTGGGCG
GGGTTCCCAACGAGGCCGCTGAGCAGGAAGTCCGAGAGCTTCTTCAAGAC
AAGAAATGGGGCAACCGGTAGATGATCGCCGCTGGAGCGGACGTTAACAC
GATCGACCCATGCCCCGAAGCCGGCACAGCCTTGCACTTGGCTGCGTTCA
ACATGGCCGAAAATGTCGACACGCTAGTTGCCGCGGGGGCGTCCGCGAGC
GCGAAGGGCGCCGTCAGCGGGGGCGAGCCCCTCCACGTTGCCGCGGAGCG
CGGCCAGCTCGGGGCTGCTGAGGCCCGTCTGCGGCACGACGCGGACATCA
ATGCGCGAACAACGCCGGCGGGCCAGACCCCGCTGCACCTTGCAGCCGCG
AACGTCACCGGCAGCACGCAGGGCCTGGTCCACCACCTGTTGAAGGGATG
GGCCAACGAGGCCCTCGCCGACTCCGACGGCAATAAACCCGTGGATGTCA
TCGGCTGCAGCATGCTGGGCGGGGTTCCCAACGAGGCCGCTGAGCAGGAA
GTCCGAGAGCTTCTTCAAGACAAGAAATGGGGCAACCGGTAG
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