mRNA_L-elsbetiae_contig1281.2261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 295 bits (756), Expect = 2.890e-91 Identity = 207/527 (39.28%), Postives = 229/527 (43.45%), Query Frame = 3 Query: 33 HLLLANGRKLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSVKTSVDPNKAKSSFGGLYSALITAFTASTYQPAGQLALGLHVGTLLKVHLLDLFGPILDPIGYRLDLTAYYDEAEIPYMGSANAMDGPRNLMMNIFCYALVFAVIHAHPPLALKVID*CLLLLRQYVSTN**WGGGLRLRSCSIMQQNLI*R*TKDTKFSTKLVC*CRRHHCPTPSALQIDTKSVPLLP*RTLPGEFYVCDILSVPSVY*PAPSSPAAILLPFFCATCILRFFHPVVMRSDRHDLLRCPCSNRLHPHGHRTCAQVRCKCLNTHAVLKN*PIADMRTWPRSHGGCSERYQYIQVMRGPPRGEERC*LLHGSVCSAND*RFAQYAMSIALSLLWEASHL*TIRRRNDAPQPPQPLYVVNM*YGDDALNT*NPTQATKNARILELPPPPPKRKLGLMTAVHTPWSATLHAGLTGLGFYCHRNALHTAGVTGFHPLAVGPGLVGLVEPCVRFAVWVSEVLHTIEFFTVSFVSSRGK 1613 H LLA+GRKLTKEDTRKFMK++HKEL TIK+EQA N+INSS++SVK+SVDP+ A+SS GLYS LIT+FTASTYQ AGQ+ALGLHVGTLLK HLLDLFGP+LDPIGYRLDLT YYDEAEIPYMG+ NAMDGP NL MNIFCYALVFAVI AHPPLALK T F G V D L VM ++ P +RKLGLMTAVHTPWS + AGLT LGFY HR+ LHTA VTGFHPL VGPG+VGLVEP VR AVWVSEVLH IEFFTV+FV+SRGK Sbjct: 120 HRLLAHGRKLTKEDTRKFMKKYHKELTTIKQEQAAINSINSSMISVKSSVDPDNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLALK---------------------------------------TAMVYF-----------------------------------GARVVTDYL---------------------------------VMTAE----------------------------------------------------------------------------------------------------------------------------------------------------------PIRRKLGLMTAVHTPWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVGLVEPLVRVAVWVSEVLHRIEFFTVNFVASRGK 385
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 248 bits (634), Expect = 5.220e-75 Identity = 185/532 (34.77%), Postives = 210/532 (39.47%), Query Frame = 3 Query: 18 MIAEKHLLLANGRKLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSVKTSVDPNKAKSSFGGLYSALITAFTASTYQPAGQLALGLHVGTLLKVHLLDLFGPILDPIGYRLDLTAYYDEAEIPYMGSANAMDGPRNLMMNIFCYALVFAVIHAHPPLALKVID*CLLLLRQYVSTN**WGGGLRLRSCSIMQQNLI*R*TKDTKFSTKLVC*CRRHHCPTPSALQIDTKSVPLLP*RTLPGEFYVCDILSVPSVY*PAPSSPAAILLPFFCATCILRFFHPVVMRSDRHDLLRCPCSNRLHPHGHRTCAQVRCKCLNTHAVLKN*PIADMRTWPRSHGGCSERYQYIQVMRGPPRGEERC*LLHGSVCSAND*RFAQYAMSIALSLLWEASHL*TIRRRNDAPQPPQPLYVVNM*YGDDALNT*NPTQATKNARILELPPPPPKRKLGLMTAVHTPWSATLHAGLTGLGFYCHRNALHTAGVTGFHPLAVGPGLVGLVEPCVRFAVWVSEVLHTIEFFTVSFVSSRGK 1613 MI EKH LLA+GRKLTKEDTRKFMK++ S ++SVDP+ A+SS GLY+ LIT+FTASTYQ AGQ+ALGLHVGTLLK HLLDLFGP++DPIGYRLDLT YYDE EIPYMG+ANAMDGP NL MNIFCYALVF VI AHPPL+LK+ ++ V T+ Y+ ++ P R RKLGLMTAVHTPWS + AGLT LGF HR+ LHTA VTGFHPL VGPG VGLVEP VR AVWVSEVLH IEFFTV+FV+SRGK Sbjct: 1 MIDEKHRLLAHGRKLTKEDTRKFMKKYQ---------------------SKRSSVDPDNARSSLRGLYNGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLSLKM---AMIYFGARVVTD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLVMVAEPIR-----------------------------------------------------------------------------------------RKLGLMTAVHTPWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLVRVAVWVSEVLHRIEFFTVNFVASRGK 250
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 215 bits (548), Expect = 2.230e-60 Identity = 168/532 (31.58%), Postives = 207/532 (38.91%), Query Frame = 3 Query: 3 AARETMIAEKHLLLANGRKLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSVKTSVDPNKAKSSFGGLYSALITAFTASTYQPAGQLALGLHVGTLLKVHLLDLFGPILDPIGYRLDLTAYYDEAEIPYMGSANAMDGPRNLMMNIFCYALVFAVIHAHPPLALKVID*CLLLLRQYVSTN**WGGGLRLRSCSIMQQNLI*R*TKDTKFSTKLVC*CRRHHCPTPSALQIDTKSVPLLP*RTLPGEFYVCDILSVPSVY*PAPSSPAAILLPFFCATCILRFFHPVVMRSDRHDLLRCPCSNRLHPHGHRTCAQVRCKCLNTHAVLKN*PIADMRTWPRSHGGCSERYQYIQVMRGPPRGEERC*LLHGSVCSAND*RFAQYAMSIALSLLWEASHL*TIRRRNDAPQPPQPLYVVNM*YGDDALNT*NPTQATKNARILELPPPPPKRKLGLMTAVHTPWSATLHAGLTGLGFYCHRNALHTAGVTGFHPLAVGPGLVGLVEPCVRFAVWVSEVLHTIEFFTVSFV 1598 AARE MI EK LL++G L++ DT FMK++ EL IKEEQ F + SS++S+++SV P +A+SSF G+Y+ALI FTAST Q AGQ LGLH+G LLK H+LDLFGPI+DPIGYRLDL+ Y+DE +IPYMG ANAM GPRN+ +NI CY++VFAV HP +ALK L Y +GG + + D Y+ + P R RKLG MT VHTPWSA +HAGLT LG+YCHR+AL+TA + G HPLAVGPG VGLVEP VRFAV +SE+L IEFF FV Sbjct: 104 AARERMIEEKKRLLSDGF-LSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVALK-------LSMVY------YGGRV-----------------------------------------------------------------------------------------------------------------------------------------------VTD----------------YVVLFTEPAR-----------------------------------------------------------------------------------------RKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEIPGLHPLAVGPGAVGLVEPVVRFAVKISEILSDIEFFRCKFV 373
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 210 bits (534), Expect = 2.220e-56 Identity = 171/537 (31.84%), Postives = 206/537 (38.36%), Query Frame = 3 Query: 3 AARETMIAEKHLLLANGRKLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSVKTSVDPNKAKSSFGGLYSALITAFTASTYQPAGQLALGLHVGTLLKV-----HLLDLFGPILDPIGYRLDLTAYYDEAEIPYMGSANAMDGPRNLMMNIFCYALVFAVIHAHPPLALKVID*CLLLLRQYVSTN**WGGGLRLRSCSIMQQNLI*R*TKDTKFSTKLVC*CRRHHCPTPSALQIDTKSVPLLP*RTLPGEFYVCDILSVPSVY*PAPSSPAAILLPFFCATCILRFFHPVVMRSDRHDLLRCPCSNRLHPHGHRTCAQVRCKCLNTHAVLKN*PIADMRTWPRSHGGCSERYQYIQVMRGPPRGEERC*LLHGSVCSAND*RFAQYAMSIALSLLWEASHL*TIRRRNDAPQPPQPLYVVNM*YGDDALNT*NPTQATKNARILELPPPPPKRKLGLMTAVHTPWSATLHAGLTGLGFYCHRNALHTAGVTGFHPLAVGPGLVGLVEPCVRFAVWVSEVLHTIEFFTVSFV 1598 AARE MI EK LL++G L+K +T FMK++ EL IKEEQ F + SS++S+++SV P +A+SSF G+Y+ALI +FTAST Q AGQ LGLH+G LLK H+LDLFGPI+DPIGYRLDL+ Y+DE +IPYMG ANAMDGPRN+ +NIFCY++VF V HP +ALK L + Y G V D YVV L P +RKLG MT VHTPWSA +HAGLT LG+ CHRN L+TA V G HPLAVGPG VGLVEP VRFAV +SE+L IEFF FV Sbjct: 306 AARERMIEEKKRLLSDGF-LSKRETIYFMKKYRAELLRIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIASFTASTIQTAGQFTLGLHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVALK------LSMVYY--------------------------------------------------------------------GARVVTD------------------------------------------------------------------------------------------------------------------------------------------------------------------YVV-------------------------LVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEVPGLHPLAVGPGAVGLVEPVVRFAVKISEILSHIEFFKCKFV 580
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.570e-14 Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 57 KLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSVKTSVDPNKAKSSFGGLYSALITAFTASTYQPAGQLALGLHVGTLLKVHLLDLFGPILDPIGYRLDLTAYYDEAEIPYMGSANAMDGPRNLMMNIFCY---ALVFAVIHAHPPLALKV 512 +++ E+ R F+ ++ ++ I EQ +SSI+++K ++ K +S LY+A+IT+ TAST++ AGQL L L G L+K L DL GP++DPIGY+++L Y AN M GP NL + + Y A VF P AL + Sbjct: 202 RVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIKGALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTI 346 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1281.2261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1281.2261.1 >prot_L-elsbetiae_contig1281.2261.1 ID=prot_L-elsbetiae_contig1281.2261.1|Name=mRNA_L-elsbetiae_contig1281.2261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp MIAEKHLLLANGRKLTKEDTRKFMKRHHKELRTIKEEQAKFNAINSSIVSback to top mRNA from alignment at L-elsbetiae_contig1281:22188..26849- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1281.2261.1 ID=mRNA_L-elsbetiae_contig1281.2261.1|Name=mRNA_L-elsbetiae_contig1281.2261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4662bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:22188..26849- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1281:22188..26849- >mRNA_L-elsbetiae_contig1281.2261.1 ID=mRNA_L-elsbetiae_contig1281.2261.1|Name=mRNA_L-elsbetiae_contig1281.2261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:22188..26849- (Laminarionema elsbetiae ELsaHSoW15)back to top |