mRNA_L-elsbetiae_contig1281.2260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1281.2260.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI) HSP 1 Score: 568 bits (1464), Expect = 1.450e-196 Identity = 284/378 (75.13%), Postives = 327/378 (86.51%), Query Frame = 1 Query: 49 LSTEVVLNGIIRPYLSSVSKCRLQRTCKDMRRLVDTPEAWETLDLRADVIGRRTMKSGRQSIMSRQPLFFLARSVVQQPRFSLLKTADCQGLNLGAMGSTPDLLLTLFDSCKHITTLNLRETYVEDEMLPQPDSAVEKVIAQHLPGLQNLALDIDASNQGLKVLLQGCTGLKSLHIGSRCNRRGDSISMYPNDLGMKVFTTIGAPCLETLSLVDKINIGAAGLRCLLDASACPRLKTLILVRTGRVNGHCLKAISSSMGRLSSLTLDQCPITPSAVMFLLEKCPELTNLVVSTQHGLVDNPRDGRPLLEFLLAQGPSKRSKIAIQHVAQRGAPPG-LPRWLMEDLTLCTAVAA--DKCIVIGPANTAEERIAPFIAGR 1173 LSTEVVL+GIIRPYL S SKC LQRTC M RL+DTP+AWETLDLRA VIGRRTMKSGRQSI+SRQPLFFLARSVVQQPRFSLLKT D QGLNLGAMGSTPDLL+TLF+SC+HITTLNL +TYVEDE LPQP +VE VIAQHLPG+ +LAL++DASN+GL+VLL+GCT LKSLHIGSR N+ GDSISMYPNDLGMK FT +GAP LETL+LVDK+NIGAAGLRCLL+ SACPRL+TL LVRTGRVN HCLKAI+ +MGRL+SLTLDQCP+ PS V F+L+KCPELT++VVSTQHGL+ P+DGR LLE+LLAQGPS+ SKI +Q ++ RG+ G +P WL++D LC V IVIGPA TA+ERIAPF+AGR Sbjct: 4 LSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLRCLLNPSACPRLRTLTLVRTGRVNDHCLKAIAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSMVVSTQHGLLQQPQDGRALLEYLLAQGPSRLSKIEVQRLSARGSVLGNVPYWLVQDPGLCATVLEWISPRIVIGPAETADERIAPFMAGR 381
BLAST of mRNA_L-elsbetiae_contig1281.2260.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE) HSP 1 Score: 568 bits (1464), Expect = 3.110e-193 Identity = 286/394 (72.59%), Postives = 330/394 (83.76%), Query Frame = 1 Query: 10 RTRRGG---GVDWLTGLSTEVVLNGIIRPYLSSVSKCRLQRTCKDMRRLVDTPEAWETLDLRADVIGRRTMKSGRQSIMSRQPLFFLARSVVQQPRFSLLKTADCQGLNLGAMGSTPDLLLTLFDSCKHITTLNLRETYVEDEMLPQPDSAVEKVIAQHLPGLQNLALDIDASNQGLKVLLQGCTGLKSLHIGSRCNRRGDSISMYPNDLGMKVFTTIGAPCLETLSLVDKINIGAAGLRCLLDASACPRLKTLILVRTGRVNGHCLKAISSSMGRLSSLTLDQCPITPSAVMFLLEKCPELTNLVVSTQHGLVDNPRDGRPLLEFLLAQGPSKRSKIAIQHVAQRGAPPG-LPRWLMEDLTLCTAVAA--DKCIVIGPANTAEERIAPFIAGR 1173 R RGG G DW+ LS +VVL+GIIRPYL S SKC LQRTC MRRL+D+P+AWETLDLRA +IGRRTMKSGRQSI+SRQPLFFLARSVVQQPRFSLLKT D QGLNLGAMGSTPDLL+TLF+SC+HITTLNL +TYVEDE LPQP +VE VIAQHLPG+++LAL++D SN+GLKVLL+GCT LKSLHIGSR NR GDSISMYPNDLGMK FTT+GAP LETL+LVDK NIGAAGLRCLLD SACPRL+ L LVRTGRVN HCLKAI+ +MGRL+SLTLDQC + PS V F+L+KCPELT++VVSTQHGL+ P+ GR LLE+LLAQGPSK SKI +Q ++ RG+ G +P WL++D LC V IV+GPA T +ERIAPF+ GR Sbjct: 206 RVVRGGRRRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDDSNRGLKVLLEGCTRLKSLHIGSRSNRAGDSISMYPNDLGMKAFTTVGAPYLETLTLVDKFNIGAAGLRCLLDPSACPRLRKLTLVRTGRVNNHCLKAIAPAMGRLTSLTLDQCLVDPSTVQFILDKCPELTSIVVSTQHGLLQQPQGGRALLEYLLAQGPSKLSKIEVQRLSARGSVLGNVPHWLVQDPGLCATVLGWNSPRIVLGPAETVDERIAPFMVGR 599 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1281.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1281.2260.1 >prot_L-elsbetiae_contig1281.2260.1 ID=prot_L-elsbetiae_contig1281.2260.1|Name=mRNA_L-elsbetiae_contig1281.2260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=349bp MRRLVDTPEAWETLDLRADVIGRRTMKSGRQSIMSRQPLFFLARSVVQQPback to top mRNA from alignment at L-elsbetiae_contig1281:8428..12726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1281.2260.1 ID=mRNA_L-elsbetiae_contig1281.2260.1|Name=mRNA_L-elsbetiae_contig1281.2260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4299bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:8428..12726+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1281:8428..12726+ >mRNA_L-elsbetiae_contig1281.2260.1 ID=mRNA_L-elsbetiae_contig1281.2260.1|Name=mRNA_L-elsbetiae_contig1281.2260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:8428..12726+ (Laminarionema elsbetiae ELsaHSoW15)back to top |