mRNA_L-elsbetiae_contig1281.2259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1281.2259.1
Unique NamemRNA_L-elsbetiae_contig1281.2259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1281.2259.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.140e-9
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 1 
Query:   10 ENETIGAARGRRNQRLERRDRT-GDRRSTTAFSNSGAVEELGRGVRRT-----RNQSRLSWQPSGGSVNSAAAAAIPSRGGPQGRAKNG----------------AASAASAPISHSTRKPRENRAPKKVPGIFGIPVGWNAEDFDYDDSEDETYTPTLSRSSLPTGGAGAPSTRC 471
            E+ET+GA+R RRN   E R RT G +   +A ++S A    GR  R +     RN +R              + A+ ++ G QGR ++G                + S        +  + ++ ++ +KVPGIFGIPV WN ED DYDDSEDE+YT     S  PT GA A + +C
Sbjct:   19 EDETVGASRRRRN---ETRTRTRGPQGGASANNSSAANGRSGRAARFSAARLPRNAARXXXXXXXXXXXXXXSGAVTTKEG-QGRCQSGXXXXXXXXXXXXXXXXSRSENDDGTPEAGERCKKRKSTRKVPGIFGIPVAWNVEDCDYDDSEDESYTQQSGGSGPPTVGATAFAAKC 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1281.2259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCS2_9PHAE4.140e-934.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1281contigL-elsbetiae_contig1281:7611..8300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size690
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815468.9948018-CDS-L-elsbetiae_contig1281:7610..83001622815468.9948018-CDS-L-elsbetiae_contig1281:7610..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 7611..8300 +
1691682912.339045-CDS-L-elsbetiae_contig1281:7610..83001691682912.339045-CDS-L-elsbetiae_contig1281:7610..8300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 7611..8300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1281.2259.1prot_L-elsbetiae_contig1281.2259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1281 7611..8300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1281.2259.1

>prot_L-elsbetiae_contig1281.2259.1 ID=prot_L-elsbetiae_contig1281.2259.1|Name=mRNA_L-elsbetiae_contig1281.2259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MFPENETIGAARGRRNQRLERRDRTGDRRSTTAFSNSGAVEELGRGVRRT
RNQSRLSWQPSGGSVNSAAAAAIPSRGGPQGRAKNGAASAASAPISHSTR
KPRENRAPKKVPGIFGIPVGWNAEDFDYDDSEDETYTPTLSRSSLPTGGA
GAPSTRCRSQPTTKYRTKCTHSRRLLSPPLTQHSGNPRGTLSACCCCCTA
PLEDQLLTPFMTLHPFRAVVFVLLCSSRNL
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mRNA from alignment at L-elsbetiae_contig1281:7611..8300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1281.2259.1 ID=mRNA_L-elsbetiae_contig1281.2259.1|Name=mRNA_L-elsbetiae_contig1281.2259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:7611..8300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCCAGAAAATGAAACTATTGGCGCCGCGAGGGGGAGAAGGAACCA
AAGGCTCGAGAGGCGAGACCGAACGGGTGACAGACGTAGCACGACGGCGT
TTAGCAACAGCGGTGCCGTGGAAGAACTGGGCCGTGGCGTGCGCCGCACA
CGGAACCAGAGCCGACTGAGCTGGCAGCCATCGGGCGGCAGCGTAAACAG
CGCTGCTGCTGCCGCCATCCCTTCCCGCGGCGGTCCGCAAGGGAGGGCGA
AGAACGGCGCTGCTTCCGCTGCTTCTGCTCCTATCAGTCACTCTACCAGG
AAGCCGAGAGAGAATCGAGCCCCGAAGAAAGTTCCTGGAATTTTCGGGAT
TCCTGTGGGCTGGAACGCGGAAGACTTCGACTACGATGACTCGGAAGATG
AAACCTACACCCCCACGCTCTCTAGGAGCTCATTGCCGACTGGAGGCGCT
GGTGCTCCTTCCACCAGGTGTCGTTCGCAGCCCACCACGAAATACCGTAC
AAAATGTACACACAGTAGGCGCCTCCTTTCGCCCCCCCTGACTCAACACA
GCGGTAACCCACGTGGGACCCTCTCCGCATGTTGCTGCTGTTGTACAGCA
CCACTGGAAGATCAATTGTTGACCCCTTTCATGACCCTGCACCCTTTTCG
GGCTGTCGTTTTTGTGCTTCTATGTAGCAGCAGAAACCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1281:7611..8300+

>mRNA_L-elsbetiae_contig1281.2259.1 ID=mRNA_L-elsbetiae_contig1281.2259.1|Name=mRNA_L-elsbetiae_contig1281.2259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:7611..8300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCCAGAAAATGAAACTATTGGCGCCGCGAGGGGGAGAAGGAACCA
AAGGCTCGAGAGGCGAGACCGAACGGGTGACAGACGTAGCACGACGGCGT
TTAGCAACAGCGGTGCCGTGGAAGAACTGGGCCGTGGCGTGCGCCGCACA
CGGAACCAGAGCCGACTGAGCTGGCAGCCATCGGGCGGCAGCGTAAACAG
CGCTGCTGCTGCCGCCATCCCTTCCCGCGGCGGTCCGCAAGGGAGGGCGA
AGAACGGCGCTGCTTCCGCTGCTTCTGCTCCTATCAGTCACTCTACCAGG
AAGCCGAGAGAGAATCGAGCCCCGAAGAAAGTTCCTGGAATTTTCGGGAT
TCCTGTGGGCTGGAACGCGGAAGACTTCGACTACGATGACTCGGAAGATG
AAACCTACACCCCCACGCTCTCTAGGAGCTCATTGCCGACTGGAGGCGCT
GGTGCTCCTTCCACCAGGTGTCGTTCGCAGCCCACCACGAAATACCGTAC
AAAATGTACACACAGTAGGCGCCTCCTTTCGCCCCCCCTGACTCAACACA
GCGGTAACCCACGTGGGACCCTCTCCGCATGTTGCTGCTGTTGTACAGCA
CCACTGGAAGATCAATTGTTGACCCCTTTCATGACCCTGCACCCTTTTCG
GGCTGTCGTTTTTGTGCTTCTATGTAGCAGCAGAAACCTGATGTTTCCAG
AAAATGAAACTATTGGCGCCGCGAGGGGGAGAAGGAACCAAAGGCTCGAG
AGGCGAGACCGAACGGGTGACAGACGTAGCACGACGGCGTTTAGCAACAG
CGGTGCCGTGGAAGAACTGGGCCGTGGCGTGCGCCGCACACGGAACCAGA
GCCGACTGAGCTGGCAGCCATCGGGCGGCAGCGTAAACAGCGCTGCTGCT
GCCGCCATCCCTTCCCGCGGCGGTCCGCAAGGGAGGGCGAAGAACGGCGC
TGCTTCCGCTGCTTCTGCTCCTATCAGTCACTCTACCAGGAAGCCGAGAG
AGAATCGAGCCCCGAAGAAAGTTCCTGGAATTTTCGGGATTCCTGTGGGC
TGGAACGCGGAAGACTTCGACTACGATGACTCGGAAGATGAAACCTACAC
CCCCACGCTCTCTAGGAGCTCATTGCCGACTGGAGGCGCTGGTGCTCCTT
CCACCAGGTGTCGTTCGCAGCCCACCACGAAATACCGTACAAAATGTACA
CACAGTAGGCGCCTCCTTTCGCCCCCCCTGACTCAACACAGCGGTAACCC
ACGTGGGACCCTCTCCGCATGTTGCTGCTGTTGTACAGCACCACTGGAAG
ATCAATTGTTGACCCCTTTCATGACCCTGCACCCTTTTCGGGCTGTCGTT
TTTGTGCTTCTATGTAGCAGCAGAAACCTG
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