mRNA_L-elsbetiae_contig128.2249.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig128.2249.1
Unique NamemRNA_L-elsbetiae_contig128.2249.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig128.2249.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 6.880e-8
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  244 EVKKPKKGLFGSIFGGSKGKIEVPDTDVPGDMSVPDVSGS 363
            +V+KPKKGLFG +FG SKGKIEVPD DV  D S+P+VSGS
Sbjct:  846 DVQKPKKGLFGGLFGSSKGKIEVPDADVSADASLPNVSGS 885
[Close]
BLAST of mRNA_L-elsbetiae_contig128.2249.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.030e-6
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  244 EVKKPKKGLFGSIFGGSKGKIEVPDTDVPGDMSVPDVSGS 363
            +V+KPKKGLFGSIFG SK  IEVPD DV  D S+P VSGS
Sbjct:  724 DVQKPKKGLFGSIFGSSKTNIEVPDADVSADASLPGVSGS 763
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI6.880e-872.50Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE1.030e-672.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig128contigL-elsbetiae_contig128:54065..55180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D8LB94
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size629
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig128.2249.1prot_L-elsbetiae_contig128.2249.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig128 54065..55179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.3709424-CDS-L-elsbetiae_contig128:54064..541431622815466.3709424-CDS-L-elsbetiae_contig128:54064..54143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54065..54143 +
1691682911.626046-CDS-L-elsbetiae_contig128:54064..541431691682911.626046-CDS-L-elsbetiae_contig128:54064..54143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54065..54143 +
1622815466.3809297-CDS-L-elsbetiae_contig128:54345..545751622815466.3809297-CDS-L-elsbetiae_contig128:54345..54575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54346..54575 +
1691682911.6371338-CDS-L-elsbetiae_contig128:54345..545751691682911.6371338-CDS-L-elsbetiae_contig128:54345..54575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54346..54575 +
1622815466.3907104-CDS-L-elsbetiae_contig128:54861..551791622815466.3907104-CDS-L-elsbetiae_contig128:54861..55179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54862..55179 +
1691682911.6460965-CDS-L-elsbetiae_contig128:54861..551791691682911.6460965-CDS-L-elsbetiae_contig128:54861..55179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 54862..55179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig128.2249.1

>prot_L-elsbetiae_contig128.2249.1 ID=prot_L-elsbetiae_contig128.2249.1|Name=mRNA_L-elsbetiae_contig128.2249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
AGDVSVPSVDATLPTASVDMPSADVSGDLKGPDAPSVKMGEVDVPSVDAS
VDVPSVSGDVSLPSASVDVPSVDASVDVPSAEVKKPKKGLFGSIFGGSKG
KIEVPDTDVPGDMSVPDVSGSVPDVSASAPSVGGDVSVPSGSVDVPSVEM
SGDMPSTSVDIDMPSGSVDAPSVSVPAVEGKVPSVDLSGKAPEVPSVDCD
ISGDLPSAD
back to top

mRNA from alignment at L-elsbetiae_contig128:54065..55180+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig128.2249.1 ID=mRNA_L-elsbetiae_contig128.2249.1|Name=mRNA_L-elsbetiae_contig128.2249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig128:54065..55180+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGACGTGTCCGTGCCTTCTGTGGACGCGACCTTGCCGACCGCGTC
TGTTGACATGCCGTCCGCGGATGTGTCCGGTACGTCGAGGACGGATCCAT
ATTCCGCATTGAACATTGAGCAACGCATGAAGCTTACCAGACCTGTTGCA
CGGAGTATTTTTCGGGAACGTCGAACCTCCCCCGCCACCCCAGCATTGTT
TTATGTTCCGAATCCGAATCGACTCGCCTTTATTATAGTGATATTGATCG
CGGGTGGAACTGATACGTAATGATGTCGCAGGTGATCTTAAGGGCCCCGA
TGCTCCGTCCGTCAAGATGGGAGAGGTAGACGTGCCGTCTGTTGACGCGT
CGGTAGATGTGCCTTCAGTGAGCGGGGACGTTTCCCTCCCCTCAGCCTCG
GTGGACGTGCCGTCGGTCGACGCTTCGGTGGACGTGCCGTCGGCGGAGGT
GAAGAAGCCCAAGAAGGGTCTGTTCGGCAGCATCTTCGGCGGCTCCAAGG
GAAAAATCGAGGTATTTTGGCCTCAACCCCAACAGAGTGCTTTAGAGGAC
TGCCGCATGGTCAGCAGAGGTTCCACTTTCGAGGGAACATTTTTTATCGA
GCTGTGCAGATTTTAGGCCTGGAGAGTTTTTTTGTTCTGTGACAGAAGGT
CAAACCTTTTTACTCCATGGTCGACGCAAATATTGAGAATTTCATTAAAC
GTCAATGCTTTGTTTCAACTCGCAGATATGTATTATCGCAGCTTCGTCTA
GATTTCTTCACAACACCGATTTTGGCGCTTGTTGACTGTCGTCCCAGGTT
CCGGATACCGACGTACCGGGCGATATGTCAGTCCCGGACGTTAGTGGCTC
AGTGCCGGATGTTTCTGCTTCAGCGCCGAGCGTCGGCGGAGACGTGTCCG
TGCCGTCCGGATCCGTGGACGTTCCCTCCGTGGAGATGAGCGGAGACATG
CCTTCCACCTCGGTGGACATCGACATGCCGTCGGGGTCGGTGGATGCGCC
GTCTGTGTCCGTGCCGGCGGTCGAAGGCAAGGTGCCGTCGGTCGACCTGT
CAGGCAAGGCACCCGAGGTGCCTTCTGTCGACTGCGATATCTCCGGCGAC
CTTCCCTCTGCCGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig128:54065..55180+

>mRNA_L-elsbetiae_contig128.2249.1 ID=mRNA_L-elsbetiae_contig128.2249.1|Name=mRNA_L-elsbetiae_contig128.2249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig128:54065..55180+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGACGTGTCCGTGCCTTCTGTGGACGCGACCTTGCCGACCGCGTC
TGTTGACATGCCGTCCGCGGATGTGTCCGGCCGGCGACGTGTCCGTGCCT
TCTGTGGACGCGACCTTGCCGACCGCGTCTGTTGACATGCCGTCCGCGGA
TGTGTCCGGTGATCTTAAGGGCCCCGATGCTCCGTCCGTCAAGATGGGAG
AGGTAGACGTGCCGTCTGTTGACGCGTCGGTAGATGTGCCTTCAGTGAGC
GGGGACGTTTCCCTCCCCTCAGCCTCGGTGGACGTGCCGTCGGTCGACGC
TTCGGTGGACGTGCCGTCGGCGGAGGTGAAGAAGCCCAAGAAGGGTCTGT
TCGGCAGCATCTTCGGCGGCTCCAAGGGAAAAATCGAGGTGATCTTAAGG
GCCCCGATGCTCCGTCCGTCAAGATGGGAGAGGTAGACGTGCCGTCTGTT
GACGCGTCGGTAGATGTGCCTTCAGTGAGCGGGGACGTTTCCCTCCCCTC
AGCCTCGGTGGACGTGCCGTCGGTCGACGCTTCGGTGGACGTGCCGTCGG
CGGAGGTGAAGAAGCCCAAGAAGGGTCTGTTCGGCAGCATCTTCGGCGGC
TCCAAGGGAAAAATCGAGGTTCCGGATACCGACGTACCGGGCGATATGTC
AGTCCCGGACGTTAGTGGCTCAGTGCCGGATGTTTCTGCTTCAGCGCCGA
GCGTCGGCGGAGACGTGTCCGTGCCGTCCGGATCCGTGGACGTTCCCTCC
GTGGAGATGAGCGGAGACATGCCTTCCACCTCGGTGGACATCGACATGCC
GTCGGGGTCGGTGGATGCGCCGTCTGTGTCCGTGCCGGCGGTCGAAGGCA
AGGTGCCGTCGGTCGACCTGTCAGGCAAGGCACCCGAGGTGCCTTCTGTC
GACTGCGATATCTCCGGCGACCTTCCCTCTGCCGACGTTCCGGATACCGA
CGTACCGGGCGATATGTCAGTCCCGGACGTTAGTGGCTCAGTGCCGGATG
TTTCTGCTTCAGCGCCGAGCGTCGGCGGAGACGTGTCCGTGCCGTCCGGA
TCCGTGGACGTTCCCTCCGTGGAGATGAGCGGAGACATGCCTTCCACCTC
GGTGGACATCGACATGCCGTCGGGGTCGGTGGATGCGCCGTCTGTGTCCG
TGCCGGCGGTCGAAGGCAAGGTGCCGTCGGTCGACCTGTCAGGCAAGGCA
CCCGAGGTGCCTTCTGTCGACTGCGATATCTCCGGCGACCTTCCCTCTGC
CGAC
back to top