mRNA_L-elsbetiae_contig128.2248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig128.2248.1
Unique NamemRNA_L-elsbetiae_contig128.2248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig128.2248.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.750e-20
Identity = 60/114 (52.63%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:    7 TPETELKRLSSSSGGLVSRLTAAIEHRDPSPAVRSETAGGFGRGSK------------LEGGADVPGLDASAPEVRDPQVATAGVSVAAPRVSGDVDASGSMPSIEGSASLPEA 312
            TPE  +KR SS  GG+VSRL AAIEH+ PSP V  E AGGFGRGS             +EG  DVPG DA+ PE+RDP+   A V+     V GDV   G MPS+EG A+LP A
Sbjct:  240 TPEPRMKRFSS--GGVVSRLAAAIEHKGPSPVVGREGAGGFGRGSSFALEKEIGGAPNVEGSVDVPGADANVPEMRDPKAPNAEVT----GVGGDVSVGGLMPSVEGGAALPTA 347
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BLAST of mRNA_L-elsbetiae_contig128.2248.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.230e-20
Identity = 61/116 (52.59%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    1 GATPETELKRLSSSSGGLVSRLTAAIEHRDPSPAVRSETAGGFGRGSK------------LEGGADVPGLDASAPEVRDPQVATAGVSVAAPRVSGDVDASGSMPSIEGSASLPEA 312
            G TPE    R+  SSGG+VSRL AAIEH+ PSP V  E AGGFGRGS             +EG  DVPG DA+ PE+RDP+   A V+     V GDV   GSMPS+EG A+LP A
Sbjct:  368 GTTPE---PRIRFSSGGVVSRLAAAIEHKGPSPVVGREGAGGFGRGSSFALEKEGGGAPNVEGSVDVPGADANVPEMRDPKAPGAEVT----GVGGDVSVGGSMPSVEGGAALPTA 476
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9M1_9PHAE6.750e-2052.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB94_ECTSI9.230e-2052.59Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig128contigL-elsbetiae_contig128:50672..51693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LB94
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size317
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig128.2248.1prot_L-elsbetiae_contig128.2248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig128 50672..51691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.089206-CDS-L-elsbetiae_contig128:50671..508211622815467.089206-CDS-L-elsbetiae_contig128:50671..50821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 50672..50821 +
1691682912.0655696-CDS-L-elsbetiae_contig128:50671..508211691682912.0655696-CDS-L-elsbetiae_contig128:50671..50821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 50672..50821 +
1622815467.0992355-CDS-L-elsbetiae_contig128:51103..511601622815467.0992355-CDS-L-elsbetiae_contig128:51103..51160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 51104..51160 +
1691682912.076144-CDS-L-elsbetiae_contig128:51103..511601691682912.076144-CDS-L-elsbetiae_contig128:51103..51160Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 51104..51160 +
1622815467.1082852-CDS-L-elsbetiae_contig128:51583..516911622815467.1082852-CDS-L-elsbetiae_contig128:51583..51691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 51584..51691 +
1691682912.0847814-CDS-L-elsbetiae_contig128:51583..516911691682912.0847814-CDS-L-elsbetiae_contig128:51583..51691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 51584..51691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig128.2248.1

>prot_L-elsbetiae_contig128.2248.1 ID=prot_L-elsbetiae_contig128.2248.1|Name=mRNA_L-elsbetiae_contig128.2248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
GATPETELKRLSSSSGGLVSRLTAAIEHRDPSPAVRSETAGGFGRGSKLE
GGADVPGLDASAPEVRDPQVATAGVSVAAPRVSGDVDASGSMPSIEGSAS
LPEAE
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mRNA from alignment at L-elsbetiae_contig128:50672..51693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig128.2248.1 ID=mRNA_L-elsbetiae_contig128.2248.1|Name=mRNA_L-elsbetiae_contig128.2248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1022bp|location=Sequence derived from alignment at L-elsbetiae_contig128:50672..51693+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCCACGCCCGAGACCGAACTGAAGCGCCTTTCCTCCTCCAGCGGCGG
CTTGGTTAGCCGTCTCACGGCTGCGATAGAGCACAGGGACCCGAGTCCTG
CTGTTAGGAGCGAAACGGCGGGGGGTTTCGGTCGCGGCTCGAAACTAGAG
GTGAAAACCGCCCGCTGTCCCTTGCGAATGGATGAGAGAAATTGGTTCAC
TTTCCCCAACGCTTTTCCCCCACGCGTCCCGCAGTCTGGTGGTGTAAGGA
TGCTCTGCGTTTTGTCGTATGCCTTGCCTAATCGCTTTGGAGCTGCTCGT
TATTGTTCTGCGACAAGGTTCATTGCTGATGTGTGTGTTCTCACCATCGG
GGAGCGTGGTTGAGTTTGACCCGTCTCGCCGTTTCCGCACGCCTGGTATC
TGTGTCCTTGGACGCTTCTGTTGTAATCGCAGGGAGGAGCTGACGTCCCG
GGGTTGGACGCGAGTGCGCCGGAAGTTAGAGATCCTCAGGTTCGTTGGCG
TCCAAATGCGTGCGTGAGCGAGCAAAGAAAGAGGGGTAGTCGGCGTCAGG
CGAGACTGGTAGCTGTGACGTATGGAACGTGTGGTGGCGATCTCTGGCGT
TTACTTCAGGCTGAACATTCAGTGTGACGTAACAGGACACCTCAATGCGG
TAGGGCTTTGCGCTTTTCTATCCCCCACGTCTGGTCGAAAGGTTGCGTAC
CCCCTGCCTTTACTCCTCTGTCTTGATTAGGTGCGTGCTTCTGTCGTTCC
TACCGCTGCTGCTCTGTGGGATACGCTTTTTGATTTTCAATATAATATTT
TTTTTTGTTTCGCCATTGCGCTCGTTACTTTTCTCCTCCTTAATGCGTTG
TCGCTGTGCGTGTATTCAATAGCAACTTACGCAGTTTGGCACCCCCTCTC
CGCGCTTTACAGGTTGCAACCGCCGGCGTGTCAGTTGCTGCGCCAAGGGT
TAGCGGCGACGTCGACGCGTCTGGATCGATGCCTTCGATAGAAGGCAGCG
CATCGTTGCCGGAGGCGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig128:50672..51693+

>mRNA_L-elsbetiae_contig128.2248.1 ID=mRNA_L-elsbetiae_contig128.2248.1|Name=mRNA_L-elsbetiae_contig128.2248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig128:50672..51693+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCCACGCCCGAGACCGAACTGAAGCGCCTTTCCTCCTCCAGCGGCGG
CTTGGTTAGCCGTCTCACGGCTGCGATAGAGCACAGGGACCCGAGTCCTG
CTGTTAGGAGCGAAACGGCGGGGGGTTTCGGTCGCGGCTCGAAACTAGAG
GGTGCCACGCCCGAGACCGAACTGAAGCGCCTTTCCTCCTCCAGCGGCGG
CTTGGTTAGCCGTCTCACGGCTGCGATAGAGCACAGGGACCCGAGTCCTG
CTGTTAGGAGCGAAACGGCGGGGGGTTTCGGTCGCGGCTCGAAACTAGAG
GGAGGAGCTGACGTCCCGGGGTTGGACGCGAGTGCGCCGGAAGTTAGAGA
TCCTCAGGGAGGAGCTGACGTCCCGGGGTTGGACGCGAGTGCGCCGGAAG
TTAGAGATCCTCAGGTTGCAACCGCCGGCGTGTCAGTTGCTGCGCCAAGG
GTTAGCGGCGACGTCGACGCGTCTGGATCGATGCCTTCGATAGAAGGCAG
CGCATCGTTGCCGGAGGCGGAAGTTGCAACCGCCGGCGTGTCAGTTGCTG
CGCCAAGGGTTAGCGGCGACGTCGACGCGTCTGGATCGATGCCTTCGATA
GAAGGCAGCGCATCGTTGCCGGAGGCGGAA
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