mRNA_L-elsbetiae_contig128.2246.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig128.2246.1
Unique NamemRNA_L-elsbetiae_contig128.2246.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig128.2246.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 4.640e-76
Identity = 126/145 (86.90%), Postives = 133/145 (91.72%), Query Frame = 3 
Query:    3 QGELEPRVNVLNVRVHGNKLAIEGEMSNGGPFLRVPFRYDFSLSASRDGHVLHFKGSSVYWGTPGGHVPLPMLPLQSFNIDLGDRARIEHLRTSRGVLSIGGRFILANTPGFTVAHPGLKRGNINFDLAESLSRLVSNVLCLRRE 437
            QG LEP V+VL VRVHGNKLAIEGEM+NGG FLRVPFRY FSLSAS DGHVL+FKGSSVYWGTPGGHVPLPM+PLQSF IDLGDRARIEHLR SRGVLS+GGRFIL NTPGFTVA PGLKRG+IN+DLAESLSRLVSN L LRRE
Sbjct:  194 QGGLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSNCLNLRRE 338
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BLAST of mRNA_L-elsbetiae_contig128.2246.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 4.820e-75
Identity = 125/145 (86.21%), Postives = 133/145 (91.72%), Query Frame = 3 
Query:    3 QGELEPRVNVLNVRVHGNKLAIEGEMSNGGPFLRVPFRYDFSLSASRDGHVLHFKGSSVYWGTPGGHVPLPMLPLQSFNIDLGDRARIEHLRTSRGVLSIGGRFILANTPGFTVAHPGLKRGNINFDLAESLSRLVSNVLCLRRE 437
            QG LEP V+VL VRVHGNKLAIEGEM+NGG FLRVPFRY FSLSAS+DGHVL+FKGSSVYWGTPGGHVPLPM+PLQSF IDLGDRARIEHLR SRGVLS+GGRFIL NTPGFTVA PGLKRG+IN+DLAE LSRLVSN L LRRE
Sbjct:  285 QGRLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASQDGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSNCLNLRRE 429
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BLAST of mRNA_L-elsbetiae_contig128.2246.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.890e-15
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 3 
Query:   24 VNVLNVRVHGNKLAIEGEMSNGGPFLRVPFRYDFSLSASRDGHVLHFKGSSVYWGTPGGHVPLPMLPLQSFNIDLGDRARIEHLRTSRGVLSIGGRFILANTPGFTVAHPGLKRGNINFDLAESLSRLVSNVL 422
            + +  V    ++L IEGEM+      +VPF Y  S+     GHV++ K + V+W   GG + LP+LPL++F++D+G+ ARIE +R   G +++  R +++  P   VA    KR    FD+AE LS    N++
Sbjct:  372 ITITQVLAKRSRLVIEGEMAYDSA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLR-KRAAFRFDVAERLSVTFGNLV 501
[Close]
BLAST of mRNA_L-elsbetiae_contig128.2246.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.190e-15
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 3 
Query:   24 VNVLNVRVHGNKLAIEGEMSNGGPFLRVPFRYDFSLSASRDGHVLHFKGSSVYWGTPGGHVPLPMLPLQSFNIDLGDRARIEHLRTSRGVLSIGGRFILANTPGFTVAHPGLKRGNINFDLAESLSRLVSNVL 422
            + +  V    ++L IEGEM+      +VPF Y  S+     GHV++ K + V+W   GG + LP+LPL++F++D+G+ ARIE +R   G +++  R +++  P   VA    KR    FD+AE LS    N++
Sbjct:  631 ITITQVSAKRSRLVIEGEMAYDSA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVR-KRAAFRFDVAERLSVTFGNLV 760
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB91_ECTSI4.640e-7686.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9J0_9PHAE4.820e-7586.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8F0_ECTSI3.890e-1535.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8F0_9PHAE5.190e-1535.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig128contigL-elsbetiae_contig128:25165..27732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1954
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig128.2246.1prot_L-elsbetiae_contig128.2246.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig128 25242..26218 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.8929505-UTR-L-elsbetiae_contig128:25164..252411622815466.8929505-UTR-L-elsbetiae_contig128:25164..25241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 25165..25241 +
1691682911.9347267-UTR-L-elsbetiae_contig128:25164..252411691682911.9347267-UTR-L-elsbetiae_contig128:25164..25241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 25165..25241 +
1622815466.932714-UTR-L-elsbetiae_contig128:26218..277321622815466.932714-UTR-L-elsbetiae_contig128:26218..27732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 26219..27732 +
1691682911.960396-UTR-L-elsbetiae_contig128:26218..277321691682911.960396-UTR-L-elsbetiae_contig128:26218..27732Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 26219..27732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.9041264-CDS-L-elsbetiae_contig128:25241..254201622815466.9041264-CDS-L-elsbetiae_contig128:25241..25420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 25242..25420 +
1691682911.9433832-CDS-L-elsbetiae_contig128:25241..254201691682911.9433832-CDS-L-elsbetiae_contig128:25241..25420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 25242..25420 +
1622815466.9204752-CDS-L-elsbetiae_contig128:26034..262181622815466.9204752-CDS-L-elsbetiae_contig128:26034..26218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 26035..26218 +
1691682911.9517329-CDS-L-elsbetiae_contig128:26034..262181691682911.9517329-CDS-L-elsbetiae_contig128:26034..26218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 26035..26218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig128.2246.1

>prot_L-elsbetiae_contig128.2246.1 ID=prot_L-elsbetiae_contig128.2246.1|Name=mRNA_L-elsbetiae_contig128.2246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MSNGGPFLRVPFRYDFSLSASRDGHVLHFKGSSVYWGTPGGHVPLPMLPL
QSFNIDLGDRARIEHLRTSRGVLSIGGRFILANTPGFTVAHPGLKRGNIN
FDLAESLSRLVSNVLCLRRE*
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mRNA from alignment at L-elsbetiae_contig128:25165..27732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig128.2246.1 ID=mRNA_L-elsbetiae_contig128.2246.1|Name=mRNA_L-elsbetiae_contig128.2246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2568bp|location=Sequence derived from alignment at L-elsbetiae_contig128:25165..27732+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGGCGAGTTGGAGCCGCGGGTTAACGTGTTGAACGTGAGGGTGCAC
GGGAACAAGCTTGCGATCGAAGGGGAGATGAGCAACGGGGGGCCGTTCCT
GCGCGTGCCCTTCCGCTACGACTTCTCTCTGAGCGCGTCCCGGGATGGGC
ACGTTCTGCACTTCAAGGGCTCGAGCGTGTACTGGGGCACCCCCGGGGGG
CACGTGCCCCTGCCCATGTTGCCGCTGCAGTCGTTCAACATCGACCTGGG
CGACAGGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGTGGGAGG
CAGGCAAGGCAGGTTTCTGCACTAACTACTGCAGTGTATCTGCATGGTCG
CGGTTGTGCCGGCCAGGCCTGCCGTGCGCGTTATGCTTCTGAACGCGGGG
TGACGGGGATACGCGTGCCGAGGGAGCATGCCTAATCTCATGTGCTACAT
TACTGACCAATACTATGTATGTGTCTACATAGCGTGACATGTATACCTTT
CCGTGCCGCGCACCCACCGAACGATGGGGTGGTCGGAATGAATCGACCTT
GTCGGTGCTCAGGAGTTCGTGTTCGTGTTCGTGTGTTTTTATGCTTGCCG
AATGCGGCAGGCATGCAAATGTCGCGCGAGGTTTTCCCCATGTGCATTGG
CTCTTGACACAAATAGGGGGCTCGACCATTGGTTGGAAGAGAGACACACA
TCACTTTTTTTTAGGTACTATAGCTCCCCGCGGTGCCGCTCGTGCGTACT
TAGTCTTGCATCATGTCAATCACAAGTTGTTGTTGATCCCCGACATCTGC
TCGTGCTGTGCGTTCCCCCCTCCCCTCCCGCTGCGCGTCCGCCCGCCGCC
CTCGGTGCATCGGCGCGCAGGGCTAGGATAGAGCACTTGAGGACCTCCCG
CGGCGTCCTTTCTATCGGCGGAAGGTTCATTCTGGCGAACACGCCCGGTT
TCACGGTCGCACACCCGGGCCTCAAGCGGGGCAACATCAACTTCGACCTG
GCGGAGAGTCTGAGCCGCCTTGTTAGCAACGTTCTATGCTTAAGGAGGGA
ATAGTGGGGGCGACGCTACTGCTGCTGCGTTTTCTTGATGCGTTGCTTCG
TCTTTTCGGGGTACAGCGTTTTTCAAGGCGTGCACTAGACAAAAGGGGGC
CTTGCTTGCGATTTGCCTATGTTTATATGCAGGGGGTCGGCGGACCGCTT
CGCCGCAGTGGTCGCGGGGAATGCGGGGCTGTTTTCGTGTTGGCGAGCGA
TTGAACCGTTTGACTTACCCGTCTGGATTATCAAAAGAGCCTATGTACTG
CTATGCGTGTGCTCCGCTGTAAACCTTACAACATTAGGCTAAACATCTCA
CCACCTTTCTGGGAGTATATAAGGGTTGGTCGGTTTATCGATTCCAACCC
ACTATTCGGAGATGTTTGTGCTGCTGTCAATATGTGACCAGAATCAACCC
GGTTTGCTTGATGCGGTTCTAAAAGGAGGTGTGCCTACCAAAGTTTAGGT
CTGTGCGTAATTATTTGATAAGTTTTTTGTGTGGAGTGTGTGCGGTTTGT
TTTGGGTGTGTGTGCAAGGGACCGTTTGGGGGTGCCGTTGAAGGCCACGA
GAGAGTGCACCGTGGGATTTTGAAAACAATCATGTTGGCAGACTTGTTTG
CGCATGCATCGCGTATTTTTTTACCAGGAAGTTCTCCTGCTCAAATGGGG
GGGGGAAATGTACTTTGAGACTTTTTGTTGCTGGTGGACCCGGAGTACGG
GTGCGCGTTGGGAAGGTTGGGGGTTTGGGATTGCGGCTCGGCGTCCCTGT
CCTCTAGAGGGTTGTAGCTGGAGCAAGGGTGTTGGTTAGTGGTGATCACG
CACGGCCACCACCGGGTCGAGAGTGTGAGGGTCTTTCATAAAAGCGTTTG
TCGGCGTATGGTGTGAAGTGAAGAGCGTGCGTTTTGGGCAAGGTGCGTAT
TTTTGGCTGGCTTGCAGCAGAGCACCTACGAGGCGGTTTTGCTTGCGTCC
AGTCGAATCGAAACCTGCTTTGCCAATGGCTTCGGCTCGAGGTTGTCGGC
GTGACGTTAGTCTTGCTGTAGCGAGGGTTTAGGAGCGGTGAGTGGGAAGC
GTACGTTGTAGGAGACGCTCACTGTCTTCCGATTGCCACATTTTCCGTTG
CAGATCTATTTATATTTGTATCTCACTGCTTTTGTGTTTATATATGAATG
GCCTGGGCTTGTAGTTTATATTGTATCCAGTTCCAACTGTGGGGTTATGT
TTGCATGTTTTATTTTATGTCTGTATATTTTGTGGTTTATGAATGTTTGT
TTTTCAGATTTTCGGGTTGGACACAGGGTGGATTTGTATTTTTGTGTGAG
GCGTTTGGTCAAGCTGGGATATGTTGTGGGGGTATTGGTGCATAATACCT
TAGTTTTCCTGGAATCGAGAGAATGGCTGGAGCAGATTCAGGAGGGCTGG
GCTAACCAGTGTTGGCTTGCGTAGATGTACCCCATTCCCCAAGGCGGTGG
GTGCATTGATTTATAGTTGACAGAGACTCGATGCTTCGTAACCGTAAACT
TTCCTGCAAAATACCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig128:25165..27732+

>mRNA_L-elsbetiae_contig128.2246.1 ID=mRNA_L-elsbetiae_contig128.2246.1|Name=mRNA_L-elsbetiae_contig128.2246.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig128:25165..27732+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAACGGGGGGCCGTTCCTGCGCGTGCCCTTCCGCTACGACTTCTC
TCTGAGCGCGTCCCGGGATGGGCACGTTCTGCACTTCAAGGGCTCGAGCG
TGTACTGGGGCACCCCCGGGGGGCACGTGCCCCTGCCCATGTTGCCGCTG
CAGTCGTTCAACATCGACCTGGGCGACAGATGAGCAACGGGGGGCCGTTC
CTGCGCGTGCCCTTCCGCTACGACTTCTCTCTGAGCGCGTCCCGGGATGG
GCACGTTCTGCACTTCAAGGGCTCGAGCGTGTACTGGGGCACCCCCGGGG
GGCACGTGCCCCTGCCCATGTTGCCGCTGCAGTCGTTCAACATCGACCTG
GGCGACAGGGCTAGGATAGAGCACTTGAGGACCTCCCGCGGCGTCCTTTC
TATCGGCGGAAGGTTCATTCTGGCGAACACGCCCGGTTTCACGGTCGCAC
ACCCGGGCCTCAAGCGGGGCAACATCAACTTCGACCTGGCGGAGAGTCTG
AGCCGCCTTGTTAGCAACGTTCTATGCTTAAGGAGGGAATAGGGCTAGGA
TAGAGCACTTGAGGACCTCCCGCGGCGTCCTTTCTATCGGCGGAAGGTTC
ATTCTGGCGAACACGCCCGGTTTCACGGTCGCACACCCGGGCCTCAAGCG
GGGCAACATCAACTTCGACCTGGCGGAGAGTCTGAGCCGCCTTGTTAGCA
ACGTTCTATGCTTAAGGAGGGAATAG
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