mRNA_L-elsbetiae_contig128.2245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig128.2245.1
Unique NamemRNA_L-elsbetiae_contig128.2245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig128contigL-elsbetiae_contig128:23039..23571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig128.2245.1prot_L-elsbetiae_contig128.2245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig128 23199..23513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.4224415-UTR-L-elsbetiae_contig128:23038..231981622815466.4224415-UTR-L-elsbetiae_contig128:23038..23198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 23039..23198 +
1691682911.6556447-UTR-L-elsbetiae_contig128:23038..231981691682911.6556447-UTR-L-elsbetiae_contig128:23038..23198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 23039..23198 +
1622815466.447848-UTR-L-elsbetiae_contig128:23513..235711622815466.447848-UTR-L-elsbetiae_contig128:23513..23571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 23514..23571 +
1691682911.674916-UTR-L-elsbetiae_contig128:23513..235711691682911.674916-UTR-L-elsbetiae_contig128:23513..23571Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 23514..23571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.4344325-CDS-L-elsbetiae_contig128:23198..235131622815466.4344325-CDS-L-elsbetiae_contig128:23198..23513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 23199..23513 +
1691682911.6659884-CDS-L-elsbetiae_contig128:23198..235131691682911.6659884-CDS-L-elsbetiae_contig128:23198..23513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 23199..23513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig128.2245.1

>prot_L-elsbetiae_contig128.2245.1 ID=prot_L-elsbetiae_contig128.2245.1|Name=mRNA_L-elsbetiae_contig128.2245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MRASEADDKYANIGRKKKHPIRNTELLQVLQKVDCKNDKHLSRVCVHVCA
DCIVWRFELPNRPCICVKLRGVLHCCAARQSCLEKYRHYVALSFASSVGS
AAGV*
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mRNA from alignment at L-elsbetiae_contig128:23039..23571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig128.2245.1 ID=mRNA_L-elsbetiae_contig128.2245.1|Name=mRNA_L-elsbetiae_contig128.2245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=533bp|location=Sequence derived from alignment at L-elsbetiae_contig128:23039..23571+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCAGTTGTCCCTTTCCCTCGTCAACGTGATTACGTCGAAGTTTGGTAC
TCACGAACCCTGCTCGCGATAAAACAATAACAGGCAGGCACCGCAGGGGG
GGGTCCACCCCCCCTTCCTGTGTGGCCCCGGTTGGGTCGTCTAGCTAGTC
CTAGTGGAATATGAGGGCCAGTGAGGCAGACGACAAATATGCCAATATTG
GGAGAAAAAAAAAACATCCAATACGCAATACAGAGTTACTCCAAGTACTC
CAAAAGGTAGACTGCAAAAACGACAAGCACCTCAGTCGTGTGTGTGTACA
TGTATGCGCGGATTGTATTGTATGGAGATTCGAGCTGCCCAATCGACCTT
GCATTTGTGTCAAATTGAGGGGCGTGCTGCATTGCTGTGCGGCTCGCCAA
TCCTGTCTGGAGAAATACAGACATTATGTAGCACTCAGCTTCGCGAGTTC
GGTGGGTTCCGCCGCGGGTGTATGATGACATTAATTTTTCGCCCTTCTCC
TTCAACGCTTCGCCCTTTTCCTGCCGCCAGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig128:23039..23571+

>mRNA_L-elsbetiae_contig128.2245.1 ID=mRNA_L-elsbetiae_contig128.2245.1|Name=mRNA_L-elsbetiae_contig128.2245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig128:23039..23571+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGCCAGTGAGGCAGACGACAAATATGCCAATATTGGGAGAAAAAA
AAAACATCCAATACGCAATACAGAGTTACTCCAAGTACTCCAAAAGGTAG
ACTGCAAAAACGACAAGCACCTCAGTCGTGTGTGTGTACATGTATGCGCG
GATTGTATTGTATGGAGATTCGAGCTGCCCAATCGACCTTGCATTTGTGT
CAAATTGAGGGGCGTGCTGCATTGCTGTGCGGCTCGCCAATCCTGTCTGG
AGAAATACAGACATTATGTAGCACTCAGCTTCGCGAGTTCGGTGGGTTCC
GCCGCGGGTGTATGAATGAGGGCCAGTGAGGCAGACGACAAATATGCCAA
TATTGGGAGAAAAAAAAAACATCCAATACGCAATACAGAGTTACTCCAAG
TACTCCAAAAGGTAGACTGCAAAAACGACAAGCACCTCAGTCGTGTGTGT
GTACATGTATGCGCGGATTGTATTGTATGGAGATTCGAGCTGCCCAATCG
ACCTTGCATTTGTGTCAAATTGAGGGGCGTGCTGCATTGCTGTGCGGCTC
GCCAATCCTGTCTGGAGAAATACAGACATTATGTAGCACTCAGCTTCGCG
AGTTCGGTGGGTTCCGCCGCGGGTGTATGA
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