mRNA_L-elsbetiae_contig128.2242.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig128.2242.1 vs. uniprot
Match: A0A6H5K9R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R7_9PHAE) HSP 1 Score: 409 bits (1050), Expect = 5.570e-136 Identity = 229/364 (62.91%), Postives = 266/364 (73.08%), Query Frame = 1 Query: 25 MRLL-FSSCFAISQLQGGHSFVQHSF---VGTRTHANG------APFRSRASSPILPCSSPATTF--SSAATDEETLYLPFRHSSTVYIEMTDMYGIVYHANYVTYFKRAIEDACGAPGIRVHTLHSMKYRAAATLGERVVCSGNLVSSDE----GERSRWRFELSDAADPSRVFVSAEAVVSWPGGVALPPGKKAS--PPSAERTAAPADSRLLQPLPEAFADSPKTLEVVVWSDDLDGSGELSIRALLNYFERIRTLSLGRGPNGELGLMRLHREGVSVVVTSIADLRVNSEGVAAGDRLDVRLGAKLSRGNRVMTMYETLWTKGGRLVAHGEISLFCMDNESRRFRSVPPWVQEVLMIPSA 1062 MRLL +S + L H FV+ F G H G + S + I+ C++ +TT SSA D+ FRH STVYIEMTDMY IVYHANYVTY +RAIE A GAPG+RVH+L +KYRAAATLG+ + G LVS D+ G RSRWRFEL+ A+DPSRVFV+AEA VSWPGG A+PPG P SAE T + D+ LLQPLPEAF D PK L+VVVWSDDLD G LSIRA+LNYFERIRTLSLGRG +GELGLMRLHREGVSVVVTSI+DLRVNS+G+ AG+ LDVRLGAKLSRGNRVMTMYE+LW + G LVAH EI+LFCMDNE+R+FR VP WVQ +M+PSA Sbjct: 1 MRLLCWSPYLMVCYLLPAHGFVRQRFRTRTGPEGHRTGYGRGGTSTATSTRPTTIIACAASSTTAVDSSAVEDKHMSCSSFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGDEIAVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWPGGAAMPPGVAVIKLPRSAEPTMSD-DTELLQPLPEAFTDPPKALKVVVWSDDLDVGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWKENGTLVAHAEIALFCMDNETRKFRPVPEWVQVAIMLPSA 363
BLAST of mRNA_L-elsbetiae_contig128.2242.1 vs. uniprot
Match: D8LB89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB89_ECTSI) HSP 1 Score: 391 bits (1005), Expect = 1.490e-130 Identity = 203/274 (74.09%), Postives = 228/274 (83.21%), Query Frame = 1 Query: 259 MTDMYGIVYHANYVTYFKRAIEDACGAPGIRVHTLHSMKYRAAATLGERVVCSGNLVSSDE----GERSRWRFELSDAADPSRVFVSAEAVVSWPGGVALPPGKKAS--PPSAERTAAPADSRLLQPLPEAFADSPKTLEVVVWSDDLDGSGELSIRALLNYFERIRTLSLGRGPNGELGLMRLHREGVSVVVTSIADLRVNSEGVAAGDRLDVRLGAKLSRGNRVMTMYETLWTKGGRLVAHGEISLFCMDNESRRFRSVPPWVQEVLMIPSA 1062 MTDMY IVYHANYVTY +RAIE A GAPG+RVH+L +KYRAAATLGE + G LVS D+ G RSRWRFEL+ A+DPSRVFV+AEA VSW GG A+PPG S P SAE T D+ LLQPLPEAF DSPKTL+VVVWSDDLDG G LSIRA+LNYFERIRTLSLGRG +GELGLMRLHREGVSVVVTSI+DLRVNS+G+ AG+ LDVRLGAKLSRGNRVMTMYE+LW + G LVAH EI+LFCMDNE+R+FR VP WVQE +M+PSA Sbjct: 1 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGEEITVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWLGGAAMPPGVAVSKLPRSAEPTMTD-DTELLQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSA 273
BLAST of mRNA_L-elsbetiae_contig128.2242.1 vs. uniprot
Match: A0A835YTJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ2_9STRA) HSP 1 Score: 124 bits (310), Expect = 6.950e-28 Identity = 81/277 (29.24%), Postives = 142/277 (51.26%), Query Frame = 1 Query: 253 IEMTDMYGIVYHANYVTYFKRAIEDACGAPGIRVHTLHSMKYRAAATLGERVVCSGNLVSSDEGERSRWRFELSDAADPSRVFVSAEAVVSWPGGVALPPGKKASPPSAERTAAPADSRLLQPLPEAFADSPKTLEVVVWSDDLDGSGELSIRALLNYFERIRTLSLGRGPNGELGLMRLHREGVSVVVTSIADLRVN-SEGVAAGDRLDVRLGAKLSRGNRVMTMYETLWTK------GGRLVAHGEISLFCMDNESRRFRSVPPWVQEVLMIPSA 1062 +E TDM+G +YH NY+ + RA + G + + + +++YR AA LG+ +V SG + W+ + DA + RVFV+A ++ ++ A + L E+ S + ++V + D+L G LS +++NY ER RTLSLG E GL RLH++G +V++ I+DLR++ + +A G L+V +R R +++ + ++ K G RL+AH + L C+D +++ + P W+ E L + S+ Sbjct: 58 VEDTDMFGHMYHGNYIKWLARASQKCLGHDTVLIG-VDALRYRNAAVLGDNMVISGTFSEDAQA----WQCSVVDARNEKRVFVTASVLLGT-------------------ASSDAGASALAGKVESVPQSAQYFDMVAYGDELGADGALSPSSVINYMERTRTLSLGPP---EEGLYRLHKQGTDIVISRISDLRLDHTVRIAPGAELEVVNSGSANR--RTVSVRQRVYVKAPDEVSGRRLIAHATVELLCIDGATKKLSAFPDWILERLHVISS 305
BLAST of mRNA_L-elsbetiae_contig128.2242.1 vs. uniprot
Match: A0A7S1ZEZ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZEZ8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.870e-7 Identity = 86/329 (26.14%), Postives = 131/329 (39.82%), Query Frame = 1 Query: 247 VYIEMTDMYGIVYHANYVTYFKRAIEDAC---------------------GAPGIRVHTLHSMKYRAAATLGERVVCSG-------NLVSSDEGERSRWRFELSDAADPSRVFVSAEAVVSWPGGVALPPGKK----ASPPSAERTAAPADSRLLQPLPEAFADSPKTLEVVVWS-----DDLDG--SGELSIRALLNYFERIRTLSLGRGPNGELGLMRLHREGVSVVVTSIAD---------LRVNSEGVAAGDRLDVRLGAKLSRGNRVMTMYETLWTK--------------------GGRLVAHGEISLFCMDNESRRFRSVPP 1029 VYIE TD YG++Y+ANY+ + RA+ G + ++ +MK++++ LG V G N+ SS G W E++D D S V+ +A V +A PP P ++T+ SR P P+ F P T ++S D+ D S L + +LL FER R+ LG GPN L H G+ VVTS+ D ++ N+ + G + V+ + R ++ Y T + K G ++ ISL +D SRR S P Sbjct: 105 VYIEDTDAYGVIYNANYIRAYDRALHRTSILSSSSSXXXXXXXXSTSVITQHDGWSIASIENMKFKSSPPLGGEYVIRGTLKPSNSNINSSSGGMEEIWDMEMTDI-DGSVVYNTATGV-----HIAHPPMTSHLLLQQPLFEDKTS----SRSWLPQPQPFQ-IPSTSSSCIYSFPTFRDEYDTHLSTHLPLFSLLKLFERCRSNMLG-GPNELEKLQNEH--GLLFVVTSVKDGSLVCYEDIMKYNTVVMTPGVEVFVKTDVVVKRKGMIIDCYHTAFLKIQSDEKGKDAAEEEGRGKVENGVIIGQAIISLMSIDGTSRRPTSKLP 419 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig128.2242.1 >prot_L-elsbetiae_contig128.2242.1 ID=prot_L-elsbetiae_contig128.2242.1|Name=mRNA_L-elsbetiae_contig128.2242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=361bp MPTLNMRLLFSSCFAISQLQGGHSFVQHSFVGTRTHANGAPFRSRASSPIback to top mRNA from alignment at L-elsbetiae_contig128:2851..5305- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig128.2242.1 ID=mRNA_L-elsbetiae_contig128.2242.1|Name=mRNA_L-elsbetiae_contig128.2242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2455bp|location=Sequence derived from alignment at L-elsbetiae_contig128:2851..5305- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig128:2851..5305- >mRNA_L-elsbetiae_contig128.2242.1 ID=mRNA_L-elsbetiae_contig128.2242.1|Name=mRNA_L-elsbetiae_contig128.2242.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2166bp|location=Sequence derived from alignment at L-elsbetiae_contig128:2851..5305- (Laminarionema elsbetiae ELsaHSoW15)back to top |