mRNA_L-elsbetiae_contig128.2241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig128.2241.1
Unique NamemRNA_L-elsbetiae_contig128.2241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A6H5KCE4_9PHAE (ABM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCE4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 6.300e-77
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEE-GEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSHGXXXXXXXXXXXXXXGDGKPGMVVAAGGMGKIRELIVEPPTPLLYNAVIIEPVPPEHQGGLWDFENEPSYFDGDM 481
            RFKVKLGCE+EFETMWR RESKL SFSGFEQFMLL++DTREAEKKEEE G   AR GYTEFVSHT WAHQMDFEEWKRSQAFKKSHG XXXXXXXXXX   G      VVAAGGMGK+R+LI+EPP P LYNA I+EPVPPEHQGGLWDFE+EPSYFDGDM
Sbjct:   80 RFKVKLGCEEEFETMWRERESKLASFSGFEQFMLLRVDTREAEKKEEEEGAPAARPGYTEFVSHTTWAHQMDFEEWKRSQAFKKSHGGXXXXXXXXXXELGG-----FVVAAGGMGKMRDLIMEPPVPSLYNAAIVEPVPPEHQGGLWDFEDEPSYFDGDM 235          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: D8LB88_ECTSI (Antibiotic biosynthesis monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB88_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.670e-65
Identity = 111/152 (73.03%), Postives = 115/152 (75.66%), Query Frame = 2
Query:   44 MWRNRESKLDSFSGFEQFMLLKLDTREAEK-KEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSHGXXXXXXXXXXXXXXGDGKP-----GMVVAAGGMGKIRELIVEPPTPLLYNAVIIEPVPPEHQGGLWDFENEPSYFDGDM 481
            MWR RESKL SFSGFEQFMLL+LDTRE EK +EEEG   AR GYTEFVSHT WAHQMDFEEWK SQAFKK H               G+GK      G VV AGGMGKIRELIVEPP P LYNA IIEPVPPEHQGGLWDFE+EPSYFDGDM
Sbjct:    1 MWRERESKLASFSGFEQFMLLRLDTREVEKNEEEEGAPAARPGYTEFVSHTSWAHQMDFEEWKNSQAFKKGHSGGGG----------GEGKAKGESGGFVVVAGGMGKIRELIVEPPVPSLYNAPIIEPVPPEHQGGLWDFEDEPSYFDGDM 142          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A835YW22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW22_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.960e-17
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    5 FKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSHGXXXXXXXXXXXXXXGDGKPGMVVAAGGMGKIRELIVEPPTPLLYNAVIIEPVPPEHQ---GGLWDFENEPSYFDGDM 481
            FKVK+G E++FE  WR R+  L+  SGF  FML++ +    E +E  G  +AR G+  F + TVW H+MDF++W+  +                      D K G +  +     +  +++ PP   LY  V+  P   E     GGL+D+E  P YFDGD+
Sbjct:    9 FKVKIGNEEKFEEFWRERKLSLEGQSGFSSFMLVRGEDDFDETQE--GGRLARDGFATFETTTVWLHRMDFDDWRSKKDSP-------------------DKKRGFLAMSA--EDVAAMLLAPPEQRLYETVVTLPKAAEENVRLGGLFDWEENPDYFDGDL 147          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A2A5CNF7_9BACT (Antibiotic biosynthesis monooxygenase n=2 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2A5CNF7_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 1.490e-16
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RFK+ LG ED+FE MWRNRE+ L+   GF QF L+K  T +              GYT + SH+VW  + DFE WK+S+AF+ +H
Sbjct:    3 RFKISLGREDDFEEMWRNRETHLEGVKGFRQFNLIKGSTND--------------GYTLYASHSVWESKNDFENWKKSEAFRAAH 73          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A1M3MJ44_9HYPH (Antibiotic biosynthesis monooxygenase n=1 Tax=Rhizobiales bacterium 63-22 TaxID=1895812 RepID=A0A1M3MJ44_9HYPH)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-15
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RF+V++G E +FET+WRNR+SKL+   GFE F LL+  T EAE            GYT + SHTVW  + DF  W RS+ F+++H
Sbjct:    7 RFRVRVGSEADFETVWRNRDSKLNELPGFESFHLLRGATNEAE------------GYTLYASHTVWKSREDFLFWTRSEQFREAH 79          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A2W4AY73_9HYPH (Antibiotic biosynthesis monooxygenase n=7 Tax=Rhizobium TaxID=379 RepID=A0A2W4AY73_9HYPH)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-15
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RFKV +G E EFE++WRNR+S L    GF +F LL+  T E E            GYT F SHT WA++ DF  W +S++F+KSH
Sbjct:    7 RFKVAVGSEAEFESIWRNRDSSLPEVPGFVEFRLLRSKTNEDE------------GYTLFSSHTTWANEADFINWTKSESFRKSH 79          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A2W4CML5_9HYPH (Antibiotic biosynthesis monooxygenase n=1 Tax=Rhizobium tubonense TaxID=484088 RepID=A0A2W4CML5_9HYPH)

HSP 1 Score: 78.2 bits (191), Expect = 3.890e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RFKV +G E+EFE++WRNR+S+L    GF +F LL+  T E E            GYT F SHT+W  + DF+ W RS+ F+ +H
Sbjct:    7 RFKVAVGSENEFESIWRNRDSRLPEVPGFVEFRLLRSKTNEEE------------GYTLFSSHTIWRSEDDFQNWTRSENFRSAH 79          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A6I0DQ36_BRUAN (Antibiotic biosynthesis monooxygenase n=30 Tax=Brucellaceae TaxID=118882 RepID=A0A6I0DQ36_BRUAN)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RFKV++G E +FET+W+NR+SKL    GFE F LL+  T E E            GYT + SHTVW ++ DF  W +S+ F+ +H
Sbjct:    7 RFKVRVGSEADFETVWKNRDSKLSELPGFESFHLLRGATNEEE------------GYTLYASHTVWRNRDDFVAWTKSEQFRDAH 79          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A432VBR4_9HYPH (Antibiotic biosynthesis monooxygenase n=1 Tax=Pseudaminobacter arsenicus TaxID=1851146 RepID=A0A432VBR4_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSH 256
            RFKVK G E++FE +W+NR S L    GF QF LL+    E E            GYT F SHTVW  + DFE W +SQ F+ SH
Sbjct:    7 RFKVKPGMEEDFENVWKNRNSTLSEMKGFRQFHLLRSTFNEEE------------GYTLFASHTVWDSREDFEAWTKSQNFRDSH 79          
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Match: A0A1G4QMT1_9HYPH (Heme-degrading monooxygenase HmoA n=6 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A1G4QMT1_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 1.220e-14
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:    2 RFKVKLGCEDEFETMWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHTVWAHQMDFEEWKRSQAFKKSHG 259
            RFKVKLG E +FET+WR R+S L +  GF+ F LL+  T++               +T + SH+VWA + DFE W RS+AF+K+HG
Sbjct:    7 RFKVKLGSEADFETVWRERDSHLRTVPGFKTFNLLRGPTKD--------------DHTLYASHSVWASRADFEAWTRSEAFRKAHG 78          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig128.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCE4_9PHAE6.300e-7781.99ABM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LB88_ECTSI1.670e-6573.03Antibiotic biosynthesis monooxygenase n=1 Tax=Ecto... [more]
A0A835YW22_9STRA1.960e-1733.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2A5CNF7_9BACT1.490e-1645.88Antibiotic biosynthesis monooxygenase n=2 Tax=Cand... [more]
A0A1M3MJ44_9HYPH1.010e-1547.06Antibiotic biosynthesis monooxygenase n=1 Tax=Rhiz... [more]
A0A2W4AY73_9HYPH1.410e-1547.06Antibiotic biosynthesis monooxygenase n=7 Tax=Rhiz... [more]
A0A2W4CML5_9HYPH3.890e-1544.71Antibiotic biosynthesis monooxygenase n=1 Tax=Rhiz... [more]
A0A6I0DQ36_BRUAN1.070e-1444.71Antibiotic biosynthesis monooxygenase n=30 Tax=Bru... [more]
A0A432VBR4_9HYPH1.070e-1447.06Antibiotic biosynthesis monooxygenase n=1 Tax=Pseu... [more]
A0A1G4QMT1_9HYPH1.220e-1445.35Heme-degrading monooxygenase HmoA n=6 Tax=Xanthoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig128contigL-elsbetiae_contig128:1394..2841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-27_004790.1
Exons3
Model size685
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig128.2241.1prot_L-elsbetiae_contig128.2241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig128 1437..2640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.4960144-UTR-L-elsbetiae_contig128:1393..14361622815466.4960144-UTR-L-elsbetiae_contig128:1393..1436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 1394..1436 +
1691682911.6850536-UTR-L-elsbetiae_contig128:1393..14361691682911.6850536-UTR-L-elsbetiae_contig128:1393..1436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 1394..1436 +
1622815466.5545518-UTR-L-elsbetiae_contig128:2640..28411622815466.5545518-UTR-L-elsbetiae_contig128:2640..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 2641..2841 +
1691682911.7305737-UTR-L-elsbetiae_contig128:2640..28411691682911.7305737-UTR-L-elsbetiae_contig128:2640..2841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig128 2641..2841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.5139112-CDS-L-elsbetiae_contig128:1436..14441622815466.5139112-CDS-L-elsbetiae_contig128:1436..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 1437..1444 +
1691682911.696879-CDS-L-elsbetiae_contig128:1436..14441691682911.696879-CDS-L-elsbetiae_contig128:1436..1444Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 1437..1444 +
1622815466.5297606-CDS-L-elsbetiae_contig128:1839..20221622815466.5297606-CDS-L-elsbetiae_contig128:1839..2022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 1840..2022 +
1691682911.7090924-CDS-L-elsbetiae_contig128:1839..20221691682911.7090924-CDS-L-elsbetiae_contig128:1839..2022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 1840..2022 +
1622815466.5419319-CDS-L-elsbetiae_contig128:2390..26401622815466.5419319-CDS-L-elsbetiae_contig128:2390..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 2391..2640 +
1691682911.7187428-CDS-L-elsbetiae_contig128:2390..26401691682911.7187428-CDS-L-elsbetiae_contig128:2390..2640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig128 2391..2640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig128.2241.1

>prot_L-elsbetiae_contig128.2241.1 ID=prot_L-elsbetiae_contig128.2241.1|Name=mRNA_L-elsbetiae_contig128.2241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MWRNRESKLDSFSGFEQFMLLKLDTREAEKKEEEGEFVARTGYTEFVSHT
VWAHQMDFEEWKRSQAFKKSHGGGGGGEEEKGKEEGGDGKPGMVVAAGGM
GKIRELIVEPPTPLLYNAVIIEPVPPEHQGGLWDFENEPSYFDGDM*
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mRNA from alignment at L-elsbetiae_contig128:1394..2841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig128.2241.1 ID=mRNA_L-elsbetiae_contig128.2241.1|Name=mRNA_L-elsbetiae_contig128.2241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1448bp|location=Sequence derived from alignment at L-elsbetiae_contig128:1394..2841+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCAAGGTGAAACTTGGCTGTGAAGATGAGTTCGAAACTATGTGGA GGTGAGTTTTAAACTAAAAATCCAAGGGGTGTCTCTGAAGTGTATCTTCG ACACAAGAGTATTGTCTAGAGCTTCATCGGTTATGAGGCTTATTCCCGAT AAGGTTGAGTTGCTTTTTTAGGAGCCCGAACCAAAGGTGGAGGCAATGCT GGCACGCTTGTGTTCTACGAGGTATCTGTGTAGACCCCTGCTCTGGTGTG CATGAGCCCTTCTTGCTATAAAGACTACAGCCGATCGCTTGCGTGGGTGG ACTGAGTCGGTCTGCGTGTGTTTGTGTACACGTGTTTCCCATGTGCGTAT GTACGTGGATATGTTGGAGGCGCGGCAAGTGGATTGCCAAATCTGACACC CGGTAGACTCACCGTTCGCCCTTCATCGCACCCCTTCTTTTTGCAGGAAC CGAGAGAGCAAGCTCGACAGCTTTTCCGGTTTCGAGCAGTTCATGCTGCT CAAGCTTGACACCAGGGAGGCGGAAAAGAAGGAGGAGGAGGGAGAGTTCG TTGCCAGGACCGGGTACACGGAGTTCGTTTCGCACACCGTTTGGGCACAC CAGATGGACTTCGAGGAATGGAAGAGAAGGTACCGGAACCGAAGGGTATA TATAAACATTTGTCGTTTTTCCCACTCTAATCGGTGGCGTCTTCTAGGCA CATCCCTTTTAGAGCCTACAATACCGTGTTCCGCGTTCGTTTTGAATGGG TATTGTGGGAGGAGATAGTTCATCAAACGACGTCTGGTACAAACGCACCC CGCACAATCTGTACTGTACGGGCTGAAGAGGCGCTTGCTGTCGCTTCCTC TTCAGCAAGGGCCACTGCTCAAACCTGTTGAGCTTCGCGTATCTGCGGAC GTCCGTCACAAAAAGCTATACTCGAAGGCCTCTCGTCCGCAGCTTTGTCG GGCGCAATAAGTCCACTCATGTTTCGCTGTCGAACCCACATGCGCAGCCA AGCTTTCAAGAAAAGCCACGGCGGCGGGGGTGGCGGGGAAGAAGAAAAGG GAAAGGAGGAGGGGGGCGACGGAAAGCCTGGAATGGTCGTCGCTGCCGGA GGCATGGGAAAAATCCGCGAACTGATCGTGGAGCCTCCGACCCCCCTCCT GTACAACGCCGTGATCATCGAGCCGGTCCCGCCAGAGCACCAGGGCGGCC TGTGGGATTTCGAGAACGAGCCATCGTACTTCGACGGCGACATGTAGGTA GTCATCTCGGCAGATCGTGCTTTGGAAGTGACTCCCTTGCACGCTGCGCC GTTTACAGGCGCGAGGGGTAGATACATAAAGCAGGAGAGCACTTCGATTA CCAGTTTGTTGGTTTTCGGTCGTTTCAAGCACACGGTGGTTGTACGTACG CAAGGAACGTTGATTTTGGTTCGGGTTAGAAACTAGCGCGGAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig128:1394..2841+

>mRNA_L-elsbetiae_contig128.2241.1 ID=mRNA_L-elsbetiae_contig128.2241.1|Name=mRNA_L-elsbetiae_contig128.2241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig128:1394..2841+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGAGATGTGGAGGAACCGAGAGAGCAAGCTCGACAGCTTTTCCGGT
TTCGAGCAGTTCATGCTGCTCAAGCTTGACACCAGGGAGGCGGAAAAGAA
GGAGGAGGAGGGAGAGTTCGTTGCCAGGACCGGGTACACGGAGTTCGTTT
CGCACACCGTTTGGGCACACCAGATGGACTTCGAGGAATGGAAGAGAAGG
AACCGAGAGAGCAAGCTCGACAGCTTTTCCGGTTTCGAGCAGTTCATGCT
GCTCAAGCTTGACACCAGGGAGGCGGAAAAGAAGGAGGAGGAGGGAGAGT
TCGTTGCCAGGACCGGGTACACGGAGTTCGTTTCGCACACCGTTTGGGCA
CACCAGATGGACTTCGAGGAATGGAAGAGAAGCCAAGCTTTCAAGAAAAG
CCACGGCGGCGGGGGTGGCGGGGAAGAAGAAAAGGGAAAGGAGGAGGGGG
GCGACGGAAAGCCTGGAATGGTCGTCGCTGCCGGAGGCATGGGAAAAATC
CGCGAACTGATCGTGGAGCCTCCGACCCCCCTCCTGTACAACGCCGTGAT
CATCGAGCCGGTCCCGCCAGAGCACCAGGGCGGCCTGTGGGATTTCGAGA
ACGAGCCATCGTACTTCGACGGCGACATGTAGCCAAGCTTTCAAGAAAAG
CCACGGCGGCGGGGGTGGCGGGGAAGAAGAAAAGGGAAAGGAGGAGGGGG
GCGACGGAAAGCCTGGAATGGTCGTCGCTGCCGGAGGCATGGGAAAAATC
CGCGAACTGATCGTGGAGCCTCCGACCCCCCTCCTGTACAACGCCGTGAT
CATCGAGCCGGTCCCGCCAGAGCACCAGGGCGGCCTGTGGGATTTCGAGA
ACGAGCCATCGTACTTCGACGGCGACATGTAG
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