mRNA_L-elsbetiae_contig12670.2152.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12670.2152.1
Unique NamemRNA_L-elsbetiae_contig12670.2152.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12670.2152.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.640e-14
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    4 PTTDGFEFTTDSNDATGGTIFFDLAGFFVVTEVQLQFPVGDTYKFDLSVSSR----ESTTLITDLESVDTAGFQSFDVASFTD 240
            PTTD F++TTDS+DA G T+ F+LA + +V  V+++FPVGDTYKFDL ++      E    IT  ES DTA +QSFD++   D
Sbjct:  694 PTTDAFDWTTDSDDAIGRTVEFELAWYAMVDAVEIKFPVGDTYKFDLELNDDQIRGEILKTITGFESADTADWQSFDLSQHLD 776
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BLAST of mRNA_L-elsbetiae_contig12670.2152.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.630e-10
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 EPTTDGFEFTTDSNDATGGTIFFDLAGFFVVTEVQLQFPVGDTYKFDLSVSSR-----ESTTLITDLES 192
            EPTTDGFE++++SN+A   ++   LAG+  VTE+QL FP GDTYKFD+++ +      E+ T IT LES
Sbjct:  704 EPTTDGFEWSSNSNEAIDQSLTLSLAGYHTVTELQLMFPEGDTYKFDVTLFNNLDGTGEAYTTITGLES 772
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BLAST of mRNA_L-elsbetiae_contig12670.2152.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-8
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    7 TTDGFEFTTDSNDATGGTIFFDLAGFFVVTEVQLQFPVGDTYKFDLSV--SSRESTTLITDLESVDTAGFQSFDVASFTD 240
            TTD FE++++S++A   T+ F L  + ++  V+LQFPVG+TYKF+L++     E  +  T LESVD+ G+Q F++ +  D
Sbjct:  691 TTDAFEWSSESDEAMDRTLSFVLNSYALMEAVELQFPVGETYKFELTLYDDGDEIVSTFTGLESVDSEGWQRFELGTIDD 770
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BLAST of mRNA_L-elsbetiae_contig12670.2152.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.860e-6
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    7 TTDGFEFTTDSNDATGGTIFFDLAGFFVVTEVQLQFPVGDTYKFDLSVSSRES--TTLITDLESVDTAGFQSFDVASFTD 240
            TTD F + ++S+ A    + F L  + V+  V+LQFP+G+TYKF+L++   E    +  T  ESVD+ G+Q F++ +  D
Sbjct:  506 TTDAFVWASESDAAIDEKLSFVLKSYAVMEAVELQFPIGETYKFELTLYDDEDEIVSTFTGFESVDSEGWQRFELGTIDD 585
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12670.2152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KL74_9PHAE2.640e-1450.60F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE1.630e-1050.72F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FTH1_ECTSI1.290e-841.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE4.860e-637.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12670contigL-elsbetiae_contig12670:4528..4941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.8920643-CDS-L-elsbetiae_contig12670:4528..46031622815456.8920643-CDS-L-elsbetiae_contig12670:4528..4603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4529..4603 -
1691682906.9856756-CDS-L-elsbetiae_contig12670:4528..46031691682906.9856756-CDS-L-elsbetiae_contig12670:4528..4603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4529..4603 -
1622815456.9020221-CDS-L-elsbetiae_contig12670:4761..49411622815456.9020221-CDS-L-elsbetiae_contig12670:4761..4941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4762..4941 -
1691682906.994591-CDS-L-elsbetiae_contig12670:4761..49411691682906.994591-CDS-L-elsbetiae_contig12670:4761..4941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4762..4941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12670.2152.1prot_L-elsbetiae_contig12670.2152.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12670 4529..4941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12670.2152.1

>prot_L-elsbetiae_contig12670.2152.1 ID=prot_L-elsbetiae_contig12670.2152.1|Name=mRNA_L-elsbetiae_contig12670.2152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
EPTTDGFEFTTDSNDATGGTIFFDLAGFFVVTEVQLQFPVGDTYKFDLSV
SSRESTTLITDLESVDTAGFQSFDVASFTDQYATS
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mRNA from alignment at L-elsbetiae_contig12670:4528..4941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12670.2152.1 ID=mRNA_L-elsbetiae_contig12670.2152.1|Name=mRNA_L-elsbetiae_contig12670.2152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:4528..4941- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCGACTACCGACGGATTCGAGTTCACGACCGACTCCAACGACGCCAC
TGGAGGCACCATTTTCTTCGACCTTGCAGGGTTCTTCGTCGTGACGGAGG
TTCAGCTGCAGTTCCCCGTGGGCGACACGTACAAGTTCGACCTGTCGGTG
TCCAGCAGAGAGAGCACCACGCTCATCACGGTAAGAGAAAACATCATTGC
GATGAGTAGACCGCTTGTTTCGGCGGCGAAGAGGTACACGCGCACTCTCC
TTCATGGCCATCGCACACACAACACCTAACGACAGAAACTGAACCAAAAA
TACATTTTCGTGGTTCTTTTCGTCGCAACCATTGGCAGGACTTGGAGAGC
GTGGATACGGCAGGCTTTCAGTCCTTCGACGTGGCCAGCTTCACTGACCA
ATACGCAACGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12670:4528..4941-

>mRNA_L-elsbetiae_contig12670.2152.1 ID=mRNA_L-elsbetiae_contig12670.2152.1|Name=mRNA_L-elsbetiae_contig12670.2152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:4528..4941- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCGACTACCGACGGATTCGAGTTCACGACCGACTCCAACGACGCCAC
TGGAGGCACCATTTTCTTCGACCTTGCAGGGTTCTTCGTCGTGACGGAGG
TTCAGCTGCAGTTCCCCGTGGGCGACACGTACAAGTTCGACCTGTCGGTG
TCCAGCAGAGAGAGCACCACGCTCATCACGGAGCCGACTACCGACGGATT
CGAGTTCACGACCGACTCCAACGACGCCACTGGAGGCACCATTTTCTTCG
ACCTTGCAGGGTTCTTCGTCGTGACGGAGGTTCAGCTGCAGTTCCCCGTG
GGCGACACGTACAAGTTCGACCTGTCGGTGTCCAGCAGAGAGAGCACCAC
GCTCATCACGGACTTGGAGAGCGTGGATACGGCAGGCTTTCAGTCCTTCG
ACGTGGCCAGCTTCACTGACCAATACGCAACGAGCGACTTGGAGAGCGTG
GATACGGCAGGCTTTCAGTCCTTCGACGTGGCCAGCTTCACTGACCAATA
CGCAACGAGC
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