mRNA_L-elsbetiae_contig12670.2151.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12670.2151.1
Unique NamemRNA_L-elsbetiae_contig12670.2151.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.600e-36
Identity = 67/110 (60.91%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    1 MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSVFLQSGVVLSG 330
            M+GTGSGAPGF +LDA +LGT+I NP+D   VGST IE WGG G PDF+G G+GDQ AINGA+C   KG++DGV+CV  D TATGTV L+ G ++++ ++F+QSGV+L G
Sbjct:  798 MKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVDDTATGTVDLSWGAYYVNGNIFMQSGVLLLG 907
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 4.060e-36
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSVFLQSGVVL 324
            M+GTGSGAPGF+L +AR LGT I NP++   VGST +E W     PDF+ EGTGDQ AI GA+CA  K SFDGV CVGGD  ATG VS+ +GEWF+D ++F++SGV L
Sbjct:  779 MKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVYL 886
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.820e-35
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSVFLQSGVVL 324
            M+GTGS APGF+L +AR  GT I NP+D   VGST + EW     PDF+ EGTGDQ AI GA+CA  K SFDGV CVGGD  ATG VS+ +GEWF+D ++F++SGV L
Sbjct:  594 MKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVHL 701
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.690e-34
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIG--LPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSVFLQSGVVLSG 330
            +QGTGSGAPGF +LD R++GT I NPTD + VGST IE W G+    PDF+ EGTGDQ  I  A+C   K SFDGV CVGGD  ATGTV L  G W++D ++F++SGV L G
Sbjct:  788 VQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGDDAATGTVVLPQGSWYVDGNIFMKSGVFLDG 899
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.000e-33
Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:   13 GSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSVFLQSGVVLSG 330
            GSG   F L+DAR+LGT+I NPTD   VGST I EW G G PDF+G+GTGDQ AIN A+CA  KG++DGV CVG D +ATGTV LA GE+ +D ++F++SGV L G
Sbjct:  630 GSGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVVLAFGEYHVDGNIFMKSGVFLKG 735
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BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.190e-29
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIGEGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLA 270
            M+GTGSGAPGF +LD  +LG +I NP+D   VGST IE W G GLPDF+G G+GDQ AINGA+CA  KG+FDGV C+  D TATGTV L+
Sbjct:  119 MKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMDETATGTVDLS 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12670.2151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KFA6_9PHAE1.600e-3660.91F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FTH1_ECTSI4.060e-3661.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE4.820e-3560.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL74_9PHAE1.690e-3458.93F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FZZ4_ECTSI2.000e-3361.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUI8_ECTSI3.190e-2964.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12670contigL-elsbetiae_contig12670:3633..4516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size336
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12670.2151.1prot_L-elsbetiae_contig12670.2151.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12670 3633..4516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.8311894-CDS-L-elsbetiae_contig12670:3632..37101622815456.8311894-CDS-L-elsbetiae_contig12670:3632..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 3633..3710 -
1691682906.9603167-CDS-L-elsbetiae_contig12670:3632..37101691682906.9603167-CDS-L-elsbetiae_contig12670:3632..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 3633..3710 -
1622815456.8489037-CDS-L-elsbetiae_contig12670:3924..40891622815456.8489037-CDS-L-elsbetiae_contig12670:3924..4089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 3925..4089 -
1691682906.96887-CDS-L-elsbetiae_contig12670:3924..40891691682906.96887-CDS-L-elsbetiae_contig12670:3924..4089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 3925..4089 -
1622815456.8609715-CDS-L-elsbetiae_contig12670:4423..45161622815456.8609715-CDS-L-elsbetiae_contig12670:4423..4516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4424..4516 -
1691682906.9774244-CDS-L-elsbetiae_contig12670:4423..45161691682906.9774244-CDS-L-elsbetiae_contig12670:4423..4516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 4424..4516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12670.2151.1

>prot_L-elsbetiae_contig12670.2151.1 ID=prot_L-elsbetiae_contig12670.2151.1|Name=mRNA_L-elsbetiae_contig12670.2151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MQGTGSGAPGFRLLDARMLGTQIGNPTDNIVVGSTRIEEWGGIGLPDFIG
EGTGDQVAINGALCAATKGSFDGVSCVGGDGTATGTVSLALGEWFLDSSV
FLQSGVVLSGG*
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mRNA from alignment at L-elsbetiae_contig12670:3633..4516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12670.2151.1 ID=mRNA_L-elsbetiae_contig12670.2151.1|Name=mRNA_L-elsbetiae_contig12670.2151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=884bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:3633..4516- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGGTACCGGCTCGGGTGCGCCCGGGTTCAGGCTGCTCGACGCTAG
GATGCTCGGCACCCAAATCGGCAATCCCACCGATAACATCGTCGTGAGTG
TCTGACGGCTCGCATCGCTATTAGGAGGCTTGGGTTGGTTCGGTTTGGCC
GGCGTTACGATGTCGTGCAACCATGTGCACCCGACGGCAGACAGAGCCGT
TCACCGCCAAACCGCCGTTTTTGTCAGTATCTCTATCTTGTCATCTTTTT
GAGGGGGCAGGGCTTTATTGTACGGGGCGCCAACTTCCATGTTTGATGAA
CGGCCTCTAGATAAATTGATGAAATCTCGAATCTCGACGGTAGATCATGC
GTGGTCCATTCGAAACGTATCTCGTCTTTCTAGTGGCTATCTACGGCCAC
CATTGCAACTGATCATATGTGCGACAGGTGGGATCGACGCGGATCGAGGA
ATGGGGAGGCATCGGGTTGCCGGACTTCATAGGCGAGGGAACAGGAGACC
AAGTGGCGATCAACGGGGCTCTTTGTGCGGCGACCAAGGGCTCTTTCGAC
GGTGTAAGCTGTGTCGGGGGGGACGGCACTGCCACGGGCACGGTGAGCCT
TCTCCGCCGTACTGTCCGCTCCCTGGCAGATCAGGTTGCAGCATTATGAC
GTGTGCACACCGCCTCTCTCGCCGCCATCGGACCAAAGAAAGCGGTAGCC
ACATCGACGCGGTTTAGCAGCACCTCTCCGGTATGTACCCTCGCCCGACT
GACGTCATATATTTTGCCTTGCCTTGCTTTGCCTTGCTTTGGCTTTGCTC
CCACAGGTGTCTCTGGCACTTGGGGAGTGGTTCTTAGACAGCAGCGTCTT
CCTGCAGTCTGGCGTGGTCCTCAGCGGAGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12670:3633..4516-

>mRNA_L-elsbetiae_contig12670.2151.1 ID=mRNA_L-elsbetiae_contig12670.2151.1|Name=mRNA_L-elsbetiae_contig12670.2151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:3633..4516- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGGTACCGGCTCGGGTGCGCCCGGGTTCAGGCTGCTCGACGCTAG
GATGCTCGGCACCCAAATCGGCAATCCCACCGATAACATCGTCATGCAAG
GTACCGGCTCGGGTGCGCCCGGGTTCAGGCTGCTCGACGCTAGGATGCTC
GGCACCCAAATCGGCAATCCCACCGATAACATCGTCGTGGGATCGACGCG
GATCGAGGAATGGGGAGGCATCGGGTTGCCGGACTTCATAGGCGAGGGAA
CAGGAGACCAAGTGGCGATCAACGGGGCTCTTTGTGCGGCGACCAAGGGC
TCTTTCGACGGTGTAAGCTGTGTCGGGGGGGACGGCACTGCCACGGGCAC
GGTGGGATCGACGCGGATCGAGGAATGGGGAGGCATCGGGTTGCCGGACT
TCATAGGCGAGGGAACAGGAGACCAAGTGGCGATCAACGGGGCTCTTTGT
GCGGCGACCAAGGGCTCTTTCGACGGTGTAAGCTGTGTCGGGGGGGACGG
CACTGCCACGGGCACGGTGTCTCTGGCACTTGGGGAGTGGTTCTTAGACA
GCAGCGTCTTCCTGCAGTCTGGCGTGGTCCTCAGCGGAGGGTGAGTGTCT
CTGGCACTTGGGGAGTGGTTCTTAGACAGCAGCGTCTTCCTGCAGTCTGG
CGTGGTCCTCAGCGGAGGGTGA
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