mRNA_L-elsbetiae_contig12670.2150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12670.2150.1
Unique NamemRNA_L-elsbetiae_contig12670.2150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.380e-33
Identity = 70/126 (55.56%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:   19 GEGIACLLIAGSQNITFFQSIARFCDGDAMVVRDSNTVTLEARRFDEEDGQMEIGRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFTFAATLDPGSRFRESEENGNVGSLDGPQPIEII 396
            G G ACL +  SQNIT      R+C GDA+VVRDS  V ++A R+DEE     IG S GTGL+V+ SDS W+RR + +ENAVAG+ I GSNNFTF AT+   +    SE  GNVGS+DG QPIE+I
Sbjct:  966 GLGSACLSVVNSQNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDEEYLPWTIGLSGGTGLIVDTSDSIWVRRTTFYENAVAGLHIMGSNNFTFEATI---ASEEGSEGEGNVGSVDGQQPIEVI 1088
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BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.950e-30
Identity = 64/134 (47.76%), Postives = 86/134 (64.18%), Query Frame = 1 
Query:    1 DNPDTLGEGIACLLIAGSQNITFFQSIARFCDGDAMVVRDSNTVTLEARRFDEEDGQMEIGRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFTFAATLDPGSRFRES--EENGNVGSLDGPQPIEII 396
            D P   G G   L I GS NIT   +     DGDA+VVRDS  + +++  +D++     IG+SRGTG+VV+ SDS W+RRY+ ++N VAGI ++GSNNFTF AT+       +   E  GNVGSLDG QPIE++
Sbjct:  758 DTPTVHGLGSVGLSITGSTNITCIDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYTTYDNGVAGIHVSGSNNFTFEATIADKCWGEDCVLEGEGNVGSLDGQQPIEVV 891
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BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.990e-30
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 1 
Query:    1 DNPDTLGEGIACLLIAGSQNITFFQSIARFCDGDAMVVRDSNTVTLEARRFDEEDGQMEIGRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFTFAATLDPGSRFRES--EENGNVGSLDGPQPIEII 396
            D P   G G   L I GS NIT   +     DGDA+VVRDS  V ++A  +DEE     IG+SRGTG+VV+ SDS W+RRY+  +N +AGI ++GSNNFTF AT+       +   E  GNVGSLDG QPIE+I
Sbjct:  943 DTPAVDGLGSVGLSITGSTNITCRYASVYSSDGDALVVRDSEMVNIDAGPYDEEYRPWTIGQSRGTGIVVDSSDSVWIRRYTTSDNGIAGIHVSGSNNFTFEATIADECWTDDCVLEGEGNVGSLDGQQPIEVI 1076
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BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.080e-30
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:    1 DNPDTLGEGIACLLIAGSQNITFFQSIARFCDGDAMVVRDSNTVTLEARRFDEEDGQMEIGRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFTFAATLDPGSRFRESEENGNVGSLDGPQPIEII 396
            D P   G G   L + GS NIT   +  RF DGDA+VVRDSN ++++A  ++E      +  SRGTGL+V+  DS ++RR++++EN VAGI I G+NNFTF AT+   S   E    GNVG+LDG QPI++I
Sbjct:  953 DTPAVPGLGSTGLSVVGSTNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEELYSPWSLASSRGTGLIVDSCDSIYVRRHTLYENGVAGIHIVGTNNFTFDATIGEESTVGE----GNVGNLDGQQPIDVI 1080
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BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.460e-6
Identity = 42/123 (34.15%), Postives = 58/123 (47.15%), Query Frame = 1 
Query:   55 QNITFFQSIARFCDGDAMVVRDSNTVTLEARRFDEEDGQMEI---------GRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFTFAATLDPGSRFRESEENGNVGSLDGPQPIEII 396
            QN+T      R+C GDA+VVRDS  V+++A R+DE +G   +           SR  GL +  S +   R+           R  GS +          +  R  E  GNVGS+DG QPIE+I
Sbjct:  311 QNVTCEGVDIRYCSGDALVVRDSTLVSIDAGRYDEHEGVPSVDYRPKPRHRSDSRHVGLRLS-SPAHVTRQ-----------RRGGSPHHGLEQFYLRSNHRRGPEGAGNVGSVDGQQPIEVI 421
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12670.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFA6_9PHAE2.380e-3355.56F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE2.950e-3047.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI2.990e-3050.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KL74_9PHAE4.080e-3047.73F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FUI8_ECTSI3.460e-634.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12670contigL-elsbetiae_contig12670:1305..2908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size398
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12670.2150.1prot_L-elsbetiae_contig12670.2150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12670 1306..2908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.7416284-CDS-L-elsbetiae_contig12670:1305..14551622815456.7416284-CDS-L-elsbetiae_contig12670:1305..1455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 1306..1455 -
1691682906.9276211-CDS-L-elsbetiae_contig12670:1305..14551691682906.9276211-CDS-L-elsbetiae_contig12670:1305..1455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 1306..1455 -
1622815456.7522109-CDS-L-elsbetiae_contig12670:1875..19631622815456.7522109-CDS-L-elsbetiae_contig12670:1875..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 1876..1963 -
1691682906.9363334-CDS-L-elsbetiae_contig12670:1875..19631691682906.9363334-CDS-L-elsbetiae_contig12670:1875..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 1876..1963 -
1622815456.7648401-CDS-L-elsbetiae_contig12670:2443..25441622815456.7648401-CDS-L-elsbetiae_contig12670:2443..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 2444..2544 -
1691682906.9443724-CDS-L-elsbetiae_contig12670:2443..25441691682906.9443724-CDS-L-elsbetiae_contig12670:2443..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 2444..2544 -
1622815456.7768862-CDS-L-elsbetiae_contig12670:2851..29081622815456.7768862-CDS-L-elsbetiae_contig12670:2851..2908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 2852..2908 -
1691682906.9523692-CDS-L-elsbetiae_contig12670:2851..29081691682906.9523692-CDS-L-elsbetiae_contig12670:2851..2908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 2852..2908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12670.2150.1

>prot_L-elsbetiae_contig12670.2150.1 ID=prot_L-elsbetiae_contig12670.2150.1|Name=mRNA_L-elsbetiae_contig12670.2150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
DNPDTLGEGIACLLIAGSQNITFFQSIARFCDGDAMVVRDSNTVTLEARR
FDEEDGQMEIGRSRGTGLVVEGSDSFWMRRYSIFENAVAGIRIAGSNNFT
FAATLDPGSRFRESEENGNVGSLDGPQPIEII
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mRNA from alignment at L-elsbetiae_contig12670:1305..2908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12670.2150.1 ID=mRNA_L-elsbetiae_contig12670.2150.1|Name=mRNA_L-elsbetiae_contig12670.2150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1604bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:1305..2908- (Laminarionema elsbetiae ELsaHSoW15)
GACAACCCAGACACCCTTGGTGAAGGAATCGCATGCCTGTTGATTGCCGG
CTCCCAGGTGATCCAGCGTCGAAGGAAAACACTTTGCAATGCTGTTTCTC
TTCTCTGCATGGCACTTTGTTCTGTCTTTTGCCACTGTTCTTTCGTGTAA
TCGACGAAAGCGTCCGCAGACGGGATGTAGTTTGGTTCTGCTACACCGTG
AAGTTCGGCTCCAGAGATGGGCCCTGTATAAGAAAAACAAATGAGATATG
TTGATATCTACCTAGCTAGGGTTTCGTCACTTGGCCTGTTGGTATCTCTC
TCGCTCATTCCGTTTTTCACAACGAAGGCTTGGCTCCTCGCTACTTGCCT
TTCATCGTCCACAGAACATTACGTTTTTCCAGAGCATTGCTCGGTTCTGT
GACGGCGATGCCATGGTGGTGCGTGACTCCAACACAGTCACCCTCGAGGC
CCGCCGATTTGACGAGTGAGTCCAGTTGATGGCACCGCTGCAGGGTTGGT
CGATGATATACGGTTGCAGCTTTCGTAGGGCGAAGGCAGCTTTTTGTCGA
GCTTCGGCGTAGATATGCCGGCAGCATTGAGGCCGACGAGTCTGCGTGGT
TTCGTTTGTAAGACCTGGCTTTCACCGTGTAGCGACTGCGCAACTAACTG
TCGGTATGGTGTCCGCCAAGCTTATTCACTTCCTCGGTCCACCAGAATAA
CAATCATTTGGATTCATCCATCCGATCAGTAGACTCGTCTAGAGCGACAC
ACTGTGGGATTCAGGTCCTTGCAAATCACAAGCACATGAGACATTCTTCG
TTTGCTGCGTTTGAAAGGTCGAAAGCGCTGACACAGGGCAGGGACGCCTT
GTTTCGTTTCTGTGAAATTCCCTTTGTGAAATGTAATATTTATTGTAATA
ACATCTGGCTGCTGCCCTTAATATTGGCTTGGTTGCGGTTTTCAGGGAGG
ACGGGCAGATGGAAATTGGCCGAAGCAGGGGGACCGGGCTGGTGGTGGAG
GGCTCTGACTCCTTCTGGATGCGCCGTTACTCTGTGAGTAAAGCACATGT
CCTAGCTATGTAGTGCACACCGGGTGAATTGCGTGCTGGTTCATTTCGCC
TGCCTTCCTTGTGAAGCGGAGTGTAGACTATGGATGTCAAGTACGCACAG
CAGTGAGGCGGCCAAAACCTGAGTATCCTGGTGAATGACTTCCACGTGGG
AAACTCCCGTAGTAGCTACATATGTACATCTTAGTAGATGAGGCACGGCC
GCCCTCTTACCCGACACCGTCAGCAAGAGCGCACATCTCGCTTCTCGCTT
GCTTCGGCTGACCCGCTCATTGGAGTCTTTCAGTTGAGCTGGGGGGTACC
GCTCTGTAAAATATTGCTTGTTTACCTCGCTGGAACGCACGCTTGATACA
TGTGAATGCATACCGCACGCGGTTTTTGTTGCTCTCTTTGGTCGGATCCT
TAGATCTTCGAGAACGCGGTGGCGGGTATTCGCATCGCGGGATCCAACAA
CTTCACTTTTGCAGCTACCCTGGACCCCGGAAGCAGATTCCGAGAGAGCG
AGGAAAACGGCAATGTGGGCAGCCTCGACGGGCCGCAACCGATCGAAATC
ATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12670:1305..2908-

>mRNA_L-elsbetiae_contig12670.2150.1 ID=mRNA_L-elsbetiae_contig12670.2150.1|Name=mRNA_L-elsbetiae_contig12670.2150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:1305..2908- (Laminarionema elsbetiae ELsaHSoW15)
GACAACCCAGACACCCTTGGTGAAGGAATCGCATGCCTGTTGATTGCCGG
CTCCCAGGACAACCCAGACACCCTTGGTGAAGGAATCGCATGCCTGTTGA
TTGCCGGCTCCCAGAACATTACGTTTTTCCAGAGCATTGCTCGGTTCTGT
GACGGCGATGCCATGGTGGTGCGTGACTCCAACACAGTCACCCTCGAGGC
CCGCCGATTTGACGAAACATTACGTTTTTCCAGAGCATTGCTCGGTTCTG
TGACGGCGATGCCATGGTGGTGCGTGACTCCAACACAGTCACCCTCGAGG
CCCGCCGATTTGACGAGGAGGACGGGCAGATGGAAATTGGCCGAAGCAGG
GGGACCGGGCTGGTGGTGGAGGGCTCTGACTCCTTCTGGATGCGCCGTTA
CTCTGGAGGACGGGCAGATGGAAATTGGCCGAAGCAGGGGGACCGGGCTG
GTGGTGGAGGGCTCTGACTCCTTCTGGATGCGCCGTTACTCTATCTTCGA
GAACGCGGTGGCGGGTATTCGCATCGCGGGATCCAACAACTTCACTTTTG
CAGCTACCCTGGACCCCGGAAGCAGATTCCGAGAGAGCGAGGAAAACGGC
AATGTGGGCAGCCTCGACGGGCCGCAACCGATCGAAATCATCATCTTCGA
GAACGCGGTGGCGGGTATTCGCATCGCGGGATCCAACAACTTCACTTTTG
CAGCTACCCTGGACCCCGGAAGCAGATTCCGAGAGAGCGAGGAAAACGGC
AATGTGGGCAGCCTCGACGGGCCGCAACCGATCGAAATCATC
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