mRNA_L-elsbetiae_contig12664.2145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12664.2145.1
Unique NamemRNA_L-elsbetiae_contig12664.2145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: D8LDI4_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV
Sbjct:  355 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 399
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A836CMU5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.080e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            VELNKSYDF+KITEAG KL PL GPG+TG+KNLGNSCYMNSCLQ+
Sbjct:  323 VELNKSYDFSKITEAGKKLTPLQGPGYTGLKNLGNSCYMNSCLQL 367
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A7S2V2B3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.970e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            VELNK+YDF+KITEAGA+L PL G GFTGIKNLGNSCY+NS LQV
Sbjct:  199 VELNKTYDFSKITEAGAQLEPLYGAGFTGIKNLGNSCYINSVLQV 243
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A7S0N978_9CHLO (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N978_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.950e-16
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            VELNKS++F+KITEAGA L PLSGPG+ G+KNLGNSCYMNS +QV
Sbjct:  295 VELNKSFEFDKITEAGADLAPLSGPGYVGLKNLGNSCYMNSVMQV 339
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A8J9RIB1_9CHLO (Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIB1_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            ++LN S++F+K+TE+GA L PL+GPGF G+KNLGNSCYMNS LQV
Sbjct:  303 IDLNMSFEFDKMTESGAALEPLTGPGFVGLKNLGNSCYMNSVLQV 347
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: I0YIM7_COCSC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIM7_COCSC)

HSP 1 Score: 74.7 bits (182), Expect = 2.380e-14
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            ++LN S++F+KITE+G  L PLSGPG+ G+KNLGNSCYMNS LQV
Sbjct:  303 IDLNMSFEFDKITESGTALEPLSGPGYVGLKNLGNSCYMNSVLQV 347
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A2P6U3W2_CHLSO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3W2_CHLSO)

HSP 1 Score: 73.6 bits (179), Expect = 6.070e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            +ELN SY+F+KITEAG  L  LSGPG  G+KNLGNSCYMNS LQV
Sbjct:  294 IELNLSYEFDKITEAGEALEALSGPGLVGLKNLGNSCYMNSVLQV 338
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A7S1BZZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZZ8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.030e-13
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV-WSGL 150
            VELN SY F+ ITEAGA+LRP+SGPG+  + NLGNSCY+NS LQ+ +SGL
Sbjct:  168 VELNASYAFDAITEAGAELRPISGPGYQSLVNLGNSCYINSVLQLLYSGL 217
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BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A2V0PBV4_9CHLO (Ubiquitinyl hydrolase 1 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBV4_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 2.110e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
            V+LN  ++F+ ITEAGA L PLSGPG  G+ NLGNSCYMNSCLQV
Sbjct:  280 VDLNMRFEFDAITEAGAHLVPLSGPGHVGLVNLGNSCYMNSCLQV 324
[Close]
BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Match: A0A8J4EZ50_9CHLO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EZ50_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 2.120e-13
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 VELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQV 138
             +LN SY+F++I E+GA+L+PLSGPG TG+ NLGNSCYMNS LQV
Sbjct:  299 ADLNTSYEFSRIMESGAELQPLSGPGLTGLINLGNSCYMNSVLQV 343
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12664.2145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI4_ECTSI1.320e-22100.00Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A836CMU5_9STRA8.080e-1984.44Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S2V2B3_9STRA3.970e-1782.22Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibroca... [more]
A0A7S0N978_9CHLO2.950e-1677.78Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Pyramim... [more]
A0A8J9RIB1_9CHLO1.740e-1468.89Ubiquitin carboxyl-terminal hydrolase 5 n=1 Tax=Co... [more]
I0YIM7_COCSC2.380e-1468.89Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cocc... [more]
A0A2P6U3W2_CHLSO6.070e-1473.33Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chlo... [more]
A0A7S1BZZ8_9STRA2.030e-1368.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A2V0PBV4_9CHLO2.110e-1371.11Ubiquitinyl hydrolase 1 n=1 Tax=Raphidocelis subca... [more]
A0A8J4EZ50_9CHLO2.120e-1368.89Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Volv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12664contigL-elsbetiae_contig12664:4673..4831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LDI4
KEGG koko:K11836
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032182,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0036211,GO:0036459,GO:0042176,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.Pfam Zn-finger in ubiquitin-hydrolases and other protein
EggNOG OGsCOG5207@1,KOG0944@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04147
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.214853-CDS-L-elsbetiae_contig12664:4672..48311622815456.214853-CDS-L-elsbetiae_contig12664:4672..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12664 4673..4831 -
1691682906.624811-CDS-L-elsbetiae_contig12664:4672..48311691682906.624811-CDS-L-elsbetiae_contig12664:4672..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12664 4673..4831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12664.2145.1prot_L-elsbetiae_contig12664.2145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12664 4673..4831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12664.2145.1

>prot_L-elsbetiae_contig12664.2145.1 ID=prot_L-elsbetiae_contig12664.2145.1|Name=mRNA_L-elsbetiae_contig12664.2145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
KVELNKSYDFNKITEAGAKLRPLSGPGFTGIKNLGNSCYMNSCLQVWSGL
AS*
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mRNA from alignment at L-elsbetiae_contig12664:4673..4831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12664.2145.1 ID=mRNA_L-elsbetiae_contig12664.2145.1|Name=mRNA_L-elsbetiae_contig12664.2145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig12664:4673..4831- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGGAGCTGAACAAGTCGTACGATTTCAACAAGATCACGGAGGCGGG
GGCTAAGCTCAGGCCGCTGTCGGGACCAGGTTTCACGGGCATCAAGAACC
TCGGCAATTCGTGCTACATGAATAGCTGCCTGCAGGTATGGTCTGGTCTG
GCCTCATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12664:4673..4831-

>mRNA_L-elsbetiae_contig12664.2145.1 ID=mRNA_L-elsbetiae_contig12664.2145.1|Name=mRNA_L-elsbetiae_contig12664.2145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig12664:4673..4831- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGGAGCTGAACAAGTCGTACGATTTCAACAAGATCACGGAGGCGGG
GGCTAAGCTCAGGCCGCTGTCGGGACCAGGTTTCACGGGCATCAAGAACC
TCGGCAATTCGTGCTACATGAATAGCTGCCTGCAGGTATGGTCTGGTCTG
GCCTCATAGAAGGTGGAGCTGAACAAGTCGTACGATTTCAACAAGATCAC
GGAGGCGGGGGCTAAGCTCAGGCCGCTGTCGGGACCAGGTTTCACGGGCA
TCAAGAACCTCGGCAATTCGTGCTACATGAATAGCTGCCTGCAGGTATGG
TCTGGTCTGGCCTCATAG
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