mRNA_L-elsbetiae_contig12659.2144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12659.2144.1
Unique NamemRNA_L-elsbetiae_contig12659.2144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12659.2144.1 vs. uniprot
Match: A0A6H5L8N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8N5_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.820e-52
Identity = 91/128 (71.09%), Postives = 110/128 (85.94%), Query Frame = 1 
Query:    1 MQDKPVRVKLHVSPGRIADGTIGLESTEGSPAQLVVQAQGSNLFGLVKREIRHVFKVGELERSRSTHTAFLLRSIKSLAKGKEAMKEELLAKSLSLVRENEAVDLTFATESECNKLGDWIDAKWSVAM 384
            + DKPVRVKLHVS G++ADG IGLE   G   Q+VVQA GSNLFGLVKRE RHVFKVGELERS STHT+FLLRS+K L+KG + MK+E+L +SLSLV +NEAVD+TFA+++EC++LG+WI AKWSVAM
Sbjct:   29 LMDKPVRVKLHVSSGKVADGNIGLEKLPGGDMQIVVQAHGSNLFGLVKREFRHVFKVGELERSSSTHTSFLLRSVKHLSKGDKKMKKEILERSLSLVHKNEAVDMTFASKTECDQLGEWIAAKWSVAM 156
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BLAST of mRNA_L-elsbetiae_contig12659.2144.1 vs. uniprot
Match: D8LGP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP9_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.170e-38
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:   97 QLVVQAQGSNLFGLVKREIRHVFKVGELERSRSTHTAFLLRSIKSLAKGKEAMKEELLAKSLSLVRENEAVDLTFATESECNKLGDWIDAKWSVAM 384
            Q+VVQA GSNLFGLVKRE RHVFKVGELERS STHT+FLLRS+K L+KG E MK+E+L +SLSLV +NEAVD+TFA+++EC++LG+WI AKWSVAM
Sbjct:    2 QIVVQAHGSNLFGLVKREFRHVFKVGELERSSSTHTSFLLRSVKHLSKGNEKMKKEILERSLSLVHKNEAVDMTFASKAECDQLGEWIAAKWSVAM 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12659.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8N5_9PHAE2.820e-5271.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGP9_ECTSI1.170e-3875.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12659contigL-elsbetiae_contig12659:809..4313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005460.1
Exons3
Model size387
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12659.2144.1prot_L-elsbetiae_contig12659.2144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12659 809..4313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.145059-CDS-L-elsbetiae_contig12659:808..9541622815456.145059-CDS-L-elsbetiae_contig12659:808..954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 809..954 -
1691682906.5967286-CDS-L-elsbetiae_contig12659:808..9541691682906.5967286-CDS-L-elsbetiae_contig12659:808..954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 809..954 -
1622815456.1556187-CDS-L-elsbetiae_contig12659:1649..17711622815456.1556187-CDS-L-elsbetiae_contig12659:1649..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 1650..1771 -
1691682906.6053264-CDS-L-elsbetiae_contig12659:1649..17711691682906.6053264-CDS-L-elsbetiae_contig12659:1649..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 1650..1771 -
1622815456.17203-CDS-L-elsbetiae_contig12659:4194..43131622815456.17203-CDS-L-elsbetiae_contig12659:4194..4313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 4195..4313 -
1691682906.6135492-CDS-L-elsbetiae_contig12659:4194..43131691682906.6135492-CDS-L-elsbetiae_contig12659:4194..4313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12659 4195..4313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12659.2144.1

>prot_L-elsbetiae_contig12659.2144.1 ID=prot_L-elsbetiae_contig12659.2144.1|Name=mRNA_L-elsbetiae_contig12659.2144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MQDKPVRVKLHVSPGRIADGTIGLESTEGSPAQLVVQAQGSNLFGLVKRE
IRHVFKVGELERSRSTHTAFLLRSIKSLAKGKEAMKEELLAKSLSLVREN
EAVDLTFATESECNKLGDWIDAKWSVAM*
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mRNA from alignment at L-elsbetiae_contig12659:809..4313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12659.2144.1 ID=mRNA_L-elsbetiae_contig12659.2144.1|Name=mRNA_L-elsbetiae_contig12659.2144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3505bp|location=Sequence derived from alignment at L-elsbetiae_contig12659:809..4313- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGACAAGCCAGTTCGGGTGAAGCTGCACGTGAGCCCCGGACGAAT
AGCGGACGGCACAATTGGCCTCGAGAGCACGGAAGGCTCCCCCGCTCAGC
TCGTGGTGCAGGCACAAGGGTGAGTGCGAGAGAGACAGAGGGGGCGGCGG
CGGCGGAGGCGAGGGGGGGGGGGGGGGGTCTACGTGTGTGGCTTTTTCGG
CATGCGTGGTTTTAGAGTGAACCGTCCTATTGAGGGACACCCCCTATTAC
GGGACACCCGGCTTGCGTGGTATTATACATCATGTGTATAGCGTGCGGTA
TGGGTATTTACCGTACCGCACGCCATACCGCACAAGTATCATCTACAATA
TATATGTAACGGGGGATTCGGCATGGGTGTTGTTTTCTTCTGGAGGGGTG
GGTGTGGAAGCACTTTTTGGCGCTATCGCGGGGGGCCCGTGTTTGGGGGC
CCCCTACGATACACCATCCAGAACGATGAAAAAAAGGCAAGTCGTGCGCA
GGGACGTCATGCCATTCATCTATAAACACTTCGACTTATCGATAGTAACT
TTAATCGCAGAGAACATGTTAGTACGAGCCAGCACGTCGTGCTTGGTACT
GCGGGCCTGGGAACATGGGGTCGGCCACCGTATACGAGTTAATTAAGCGA
TAAATAAGCGGGAAAAGGTGTGCGACACGTGGCGAAAAGATAAACCGGTT
GGCGTTTTATTACTCCTCCGTATGTACATCTTGTGTGCTGTTGTCGGTCG
ATCGGTCAGTGCTGGCATTTGTTTTTTGTTCTTCACATGTATTTCCAGTG
CTCGATACGATAGGCTCCTCGCCCGCGAGCGGGCATCTTGCTAGAGTACT
GTAGAAGGGTTCCCACCTTCCTCCTGCGGTGCTTGCCTAAGATTTTTATA
ACGAGAAGGGTTCAGCATGCTCCATGTTGAGTGTGTTTTTTTTTCAAGTT
TTTCATGGAGGGTCGGGCGGGGGGGGGGGCATGCGTCTTAAATATTAAAT
ACTACTACAGCTGTGTGCAGCCAACCTACCTCCTGTTGTTTGTCCGTCAA
AGGCTCGCTGCCTGTCCACATGGTTGTCCGCGATGGTGCCTACCGTAGGT
GACATAAGATAAGACACCCCCTGGACCGAGATTGTAAGCTTGGTTACTCC
GCAACGAATACGATTCTAACCACAAGCGCCACATTTTCGGACCGCTCTCG
ACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCTG
TGGAGTACTTGAGCGTTGAAAATCGGTCCAGGGGGTGTCTCATCTTATGT
CACCTACGGTAGAGACGGGCCGCCCAAAAGATGATCACTCTGTTGATGTG
CATCCCTCCGGACGCTCTCGACCGGGGTGTGTGCTTTTGTTTCTGAAAAG
CACTCCCTCTGGCTCTCGCTGCTCTTGGTTACATTGCTCTCCAAGTGTCC
CGTGGCTTGTGAAGGGAGTCGGTGTCGCGAGGTGTGCTGTTGTTAGGGGA
AGCAAGCTCCCACTCTAGGTAAATGGTTACCGTTTTGTGGCTGAGTGGCT
TAACTGTCACAAATGGCGTCGTCGGGGCAAGACCAAAGTCATGGGTTCGA
ATCTAACCGGGCCCATCTTATTTGCAAAGAAAAATGTACGTGAAAATGCT
CTTCCACCACTGAAAAAGTAAAAAAAATCCTGGGTGAAGAAAGAATCTGG
TACCACCCCGATGAGGCACGGTCTTTGATCACCTACTCCCCAGGTTTCAG
TAGTGCCGGAGAGAGTAAGGGAGACAATATCCCACCCTGGTAAATTGTTA
TGGTAGTTATCCCTTCGTCAGTGTGGCTGAGTGGCCTAACCGTCACACTA
CACTCTGTGCACCCCTCGTGCGGGACCAGCCAGAGCGGGGTAAAACGAAG
TTCGGCAAAACAAAGTTCGGCCGGTTGGCTGCCGTCTACACTAAACAGCT
AATATTACCAAAAACAACACACACGAAGGTATGTCTGTACATCCCTTGCA
GACCCTGTTGTCGGCAAGCGCGAGATCATGCGTGTACAGCGTGTACCGTA
GGTGACACAAGATACCACACCCCCTGTACAGATTTCAAAGCTCGATTCCT
CTCCAGCAAGAAGAGTGCCACTGCCGAAAGGGGTGGCGTTGGAAAGATCT
AGTCGAGAGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGT
TACGGGGTAATGGAGCTCTAAAAGTCGGTCCAGGGGGTGTGGTATCTTGT
GTCACCTACGGTATGTATCTGAGTACATACCGTGACCACCGTCCCGACCA
CCACGACAACAAGCAGGAGCAGGCTAGACTAACCCCCCCCCCCCCCCCCC
CCCCCCCCCCATAACCCCTTCGATCCCCCGCTCGCTCTGTTTTGTCTGTT
CTCCTTTTCCTCCCCTCTCCACGGCTTGGCTCGGCCATCGGCATCGGCAT
CGGCTTAATCGATCCACCGATAACTCTCTGCCTCTGAAACACGTGCTGCG
TGTGCGCGCATGCATACAACGGACGTCCCTGTATGCATTTAGCTCCAACC
TGTTCGGGCTCGTGAAGAGGGAGATCCGGCACGTTTTCAAGGTGGGGGAG
CTGGAGCGCTCTCGCTCGACGCACACGGCTTTCCTGCTCCGCTCGATCAA
GAGCCTCGCCAAGGGTGAGTGGGAGGCGAAAATTAAAAAGTGGTTGTCAA
AGCTCAAGTAGTCCAAGGAAGGGGCTTAACCTTCTATTAACCCTACACGG
TGCCGAAAATAGAAAGTGGCGTTGGAAATAAATAAGTCTTGCCGATAATT
TAGCTATTTAGCTGTCCGAAAACGTGTCGTTTGGTGTGGAAACCCTCTCG
TCGTCACGGAGTAATGTAGTCGAACTCTAGAGTCGGAACACAAGTACCAT
GTACTCCGATGAAGTAGTAGGTTTTTGTTGTGTGCAGCAAGAGCAGTGTG
TATGACTCCTGTGTAATTGTTTTTTATTCTGGAAGATGAATCAGATGATC
AAACGGCGTTTGAGGCGGAACTCCGTGGGATTTTAATTTTTCAATTCTTT
GAGATTTGTTTTTGGTGGTCTCTGCGGATGGTTCATCTTGTAAAAATAAT
ACTTCTACATATGTAATACATCCCCTTCTGTTGTTCCCCCCCCCCCCCCC
CCCGACAACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCCCCT
CCCCCCCCNNNNNNNNNNGAGCTAGGGAGGGTTTGTCTTCGAAAAAGAAT
AATTTTGCGTAAGGGAGACTGGCCCGTTTGTTGCCCCCCCCCCCCCCCTC
TAAAAAACCCTAACCCCCTGCCCGCCCCCCCCGTCTCCCTTTTCTCTTTC
CTATCCAAGGCAAGGAGGCCATGAAAGAGGAGTTGCTCGCGAAGAGCCTG
AGCCTGGTGAGAGAGAACGAGGCGGTTGACCTCACCTTTGCTACCGAGAG
CGAGTGCAACAAGTTGGGCGATTGGATCGACGCCAAGTGGTCCGTGGCCA
TGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12659:809..4313-

>mRNA_L-elsbetiae_contig12659.2144.1 ID=mRNA_L-elsbetiae_contig12659.2144.1|Name=mRNA_L-elsbetiae_contig12659.2144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig12659:809..4313- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGACAAGCCAGTTCGGGTGAAGCTGCACGTGAGCCCCGGACGAAT
AGCGGACGGCACAATTGGCCTCGAGAGCACGGAAGGCTCCCCCGCTCAGC
TCGTGGTGCAGGCACAAGGATGCAGGACAAGCCAGTTCGGGTGAAGCTGC
ACGTGAGCCCCGGACGAATAGCGGACGGCACAATTGGCCTCGAGAGCACG
GAAGGCTCCCCCGCTCAGCTCGTGGTGCAGGCACAAGGCTCCAACCTGTT
CGGGCTCGTGAAGAGGGAGATCCGGCACGTTTTCAAGGTGGGGGAGCTGG
AGCGCTCTCGCTCGACGCACACGGCTTTCCTGCTCCGCTCGATCAAGAGC
CTCGCCAAGGCTCCAACCTGTTCGGGCTCGTGAAGAGGGAGATCCGGCAC
GTTTTCAAGGTGGGGGAGCTGGAGCGCTCTCGCTCGACGCACACGGCTTT
CCTGCTCCGCTCGATCAAGAGCCTCGCCAAGGGCAAGGAGGCCATGAAAG
AGGAGTTGCTCGCGAAGAGCCTGAGCCTGGTGAGAGAGAACGAGGCGGTT
GACCTCACCTTTGCTACCGAGAGCGAGTGCAACAAGTTGGGCGATTGGAT
CGACGCCAAGTGGTCCGTGGCCATGTGAGCAAGGAGGCCATGAAAGAGGA
GTTGCTCGCGAAGAGCCTGAGCCTGGTGAGAGAGAACGAGGCGGTTGACC
TCACCTTTGCTACCGAGAGCGAGTGCAACAAGTTGGGCGATTGGATCGAC
GCCAAGTGGTCCGTGGCCATGTGA
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