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Homology
BLAST of mRNA_L-elsbetiae_contig12653.2143.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 4.410e-11 Identity = 81/278 (29.14%), Postives = 113/278 (40.65%), Query Frame = 3
Query: 69 ASGSGEAVVADRMTCATAGRRCTVPGTRRGRVMATGAIVSSIAPRNDAPHVFRSTSPSEFGRVHGG--CWCVQCAPILALHWETVLVIDANGHAYELPFAIESSSLLVAHVRKKQRGRERR*LRQWRRYLAV*FAALPAAVAAAAGTTLGPSARSLKWLLPLRQLRVTPPFAKCFSVLISPAAEDTCFSWAENGSQ------GNGNAEAYVAVASDGCLLSSARGSEAAELHRGSSCGGDGLVHASVWADFCGDSRQELLLVDGGTSVVTHGNSRAGH 878
A G G A V +TCATAGR CTV GTR G V+ +G I + + R A VF SEFGR+ G CW VQC + V ID G YE+ + R G LG ++ S +++ ++ +A C SV++SP ++ W E G + G + V V+ DG LL + +A + G+VHAS + L + DGGT V+T G+ R GH
Sbjct: 281 ARGGGVAAVEGHVTCATAGRSCTVLGTRHGAVLFSGFITTMTSNRFCA--VF-----SEFGRLGDGLRCWRVQCECLPVTDTTVVTAIDPAGQVYEV----------------QPRN----------------------------GVALGGNSSSRYGNPSEQRVPLSANYAPCSSVILSPFDDERGQCWLETGGEVEEPGWGMNLSFGMVGVSRDGRLLFDSDEDDAGKERSA------GVVHASARIGGSCEVSHGLRMEDGGTCVLTWGDGRTGH 501
BLAST of mRNA_L-elsbetiae_contig12653.2143.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.790e-10 Identity = 84/287 (29.27%), Postives = 116/287 (40.42%), Query Frame = 3
Query: 69 ASGSGEAVVADRMTCATAGRRCTVPGTRRGRVMATGAIVSSIAPRNDAPHVFRSTSPSEFGRVHGG--CWCVQCAPILALHWETVLVIDANGHAYELPFAIESSSLLVAHVRKKQRGRERR*LRQWRRYLAV*FAALPAAVAAAAGTTLGPSARSLKWLLPLRQ-LRVTPPFAKCFSVLISPAAEDTCFSWAENGSQ------GNGNAEAYVAVASDGCLLSSARGSEAAELHRGSSCGGDGLVHASVWADFCGDSRQELLLVDGGTSVVTHGNSRAGHARPRNPRY 902
A G G V +TCATAGR CTV GTR G V+ +G + S N VF SEFGR+ G CW VQC + A V+ ID G Y+ +E + G LG + S ++ P +Q + ++ +A C SV++SP+ + W E G + G V V+ DG LL + +A + G+VHAS + L L DGGTSV+T G+ R GH P +
Sbjct: 282 ARGGGVVAVEGHVTCATAGRSCTVLGTRHGVVLFSGLM--STMTSNHFCAVF-----SEFGRLGDGLRCWRVQCECLPATGTTLVMAIDPAGQVYD----VEPRN----------------------------------------GVALGGN-NSSRYGNPSKQRVPLSADYAPCSSVILSPSDNERGQCWLETGGEVEESGWGMDVCFGMVGVSRDGRLLFDSDEDDAGKDRS------VGVVHASARIGNSCEVSHGLRLEDGGTSVLTWGDGRTGHLGHGTPAF 510
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 61.6 |
| Seed ortholog evalue | 3.3e-07 |
| Seed eggNOG ortholog | 2880.D8LDL9 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | guanyl-nucleotide exchange factor activity |
| EggNOG OGs | COG5184@1,KOG1426@2759 |
| COG Functional cat. | DZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | Regulator of chromosome condensation, RCC1 |
| Ec32 ortholog | Ec-15_000090.1 |
| Exons | 2 |
| Model size | 2080 |
| Cds size | 411 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815456.0825262-UTR-L-elsbetiae_contig12653:2638..3840 | 1622815456.0825262-UTR-L-elsbetiae_contig12653:2638..3840 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 2639..3840 - |
| 1691682906.547197-UTR-L-elsbetiae_contig12653:2638..3840 | 1691682906.547197-UTR-L-elsbetiae_contig12653:2638..3840 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 2639..3840 - |
| 1622815456.092182-UTR-L-elsbetiae_contig12653:4431..4881 | 1622815456.092182-UTR-L-elsbetiae_contig12653:4431..4881 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 4432..4881 - |
| 1691682906.5561757-UTR-L-elsbetiae_contig12653:4431..4881 | 1691682906.5561757-UTR-L-elsbetiae_contig12653:4431..4881 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 4432..4881 - |
| 1622815456.1125734-UTR-L-elsbetiae_contig12653:5292..5309 | 1622815456.1125734-UTR-L-elsbetiae_contig12653:5292..5309 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 5293..5309 - |
| 1691682906.58691-UTR-L-elsbetiae_contig12653:5292..5309 | 1691682906.58691-UTR-L-elsbetiae_contig12653:5292..5309 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12653 5293..5309 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815456.1013794-CDS-L-elsbetiae_contig12653:4881..5292 | 1622815456.1013794-CDS-L-elsbetiae_contig12653:4881..5292 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12653 4882..5292 - |
| 1691682906.5750728-CDS-L-elsbetiae_contig12653:4881..5292 | 1691682906.5750728-CDS-L-elsbetiae_contig12653:4881..5292 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12653 4882..5292 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12653.2143.1 >prot_L-elsbetiae_contig12653.2143.1 ID=prot_L-elsbetiae_contig12653.2143.1|Name=mRNA_L-elsbetiae_contig12653.2143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MGVGGGGGGVRGAAAVGASGSGEAVVADRMTCATAGRRCTVPGTRRGRVM
ATGAIVSSIAPRNDAPHVFRSTSPSEFGRVHGGCWCVQCAPILALHWETV
LVIDANGHAYELPFAIESSSLLVAHVRKKQRGRERR* back to topmRNA from alignment at L-elsbetiae_contig12653:2639..5309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12653.2143.1 ID=mRNA_L-elsbetiae_contig12653.2143.1|Name=mRNA_L-elsbetiae_contig12653.2143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2671bp|location=Sequence derived from alignment at L-elsbetiae_contig12653:2639..5309- (Laminarionema elsbetiae ELsaHSoW15)
GGATAGCGGGAGCAGACATGGGTGTAGGCGGCGGTGGCGGTGGCGTTCGT
GGTGCCGCAGCCGTGGGTGCAAGCGGGAGTGGCGAAGCTGTTGTCGCTGA
TCGGATGACGTGCGCTACCGCCGGGAGGCGGTGCACCGTGCCCGGTACTC
GCCGTGGTAGGGTTATGGCCACGGGCGCGATCGTCAGCTCAATCGCCCCT
AGAAACGACGCACCCCACGTTTTCCGCAGCACTTCGCCCTCCGAGTTCGG
ACGGGTGCATGGCGGGTGCTGGTGTGTTCAGTGCGCCCCCATCCTTGCCC
TGCATTGGGAGACGGTGCTGGTCATCGACGCCAACGGACACGCTTACGAG
CTACCATTCGCGATCGAAAGCAGTTCTCTGTTGGTGGCACACGTGCGGAA
GAAGCAGAGGGGTCGCGAGCGGCGATAGTTGCGGCAGTGGCGGCGATATT
TAGCAGTATAATTCGCAGCATTACCAGCGGCAGTAGCAGCAGCAGCGGGG
ACGACGCTAGGACCGAGCGCGCGCTCGTTGAAATGGCTCCTCCCCTTGCG
ACAGCTGAGGGTAACACCGCCGTTTGCCAAGTGCTTTTCCGTGCTCATTT
CGCCGGCAGCAGAGGACACTTGTTTTTCCTGGGCTGAGAACGGTAGCCAG
GGGAATGGCAACGCCGAGGCGTACGTGGCCGTGGCGTCTGACGGCTGTCT
GCTCTCTTCCGCCAGAGGAAGTGAGGCCGCCGAGCTGCATAGGGGCAGCA
GCTGCGGCGGCGACGGGTTGGTCCATGCGTCGGTTTGGGCTGATTTCTGC
GGCGATAGTAGGCAAGAGCTCTTACTCGTGGATGGGGGGACATCAGTGGT
AACTCACGGGAACAGCAGGGCCGGCCATGTGAGTTAGGGACGGGCAAATA
CTATTTAGCACTTGCTGCTGTGGTGGGTAGACCAGTGCACTGCTGTTTGT
TGTGCTTATACTTCTACATACATACGTGGTTTCTTCGTTTGCATGGGGTG
CGCTATACCGGGTGTCCGCGAGATATGTAGCGATCCAGCGGCCGCCGGCT
TTGGCAGTCCGAGAAGTTTTCGTTGAACTCGGCCTTGGCTCAACTTGTGT
TTGTGTGGGGTGTTTCGCGTGTGTCTGTTTCGAGGCTCTGTTTGAGCGTT
CCGCGGCAGTGTAGTTTCTTCCAACGCATCACGCATTCGAGTAATCTCTC
GCCCTCTCGATCCACACATGAAGACCAGCCCCCCCCCCGTGAGCATCCAC
CCCGGCATCCTGTCCTCTGTGTGGTGCACCAGGAAAGCTAGTCCTGACCC
ACGGCTTGTGCACGGGTGTTGTTTATGTGCACTGCCGCTGTCCAAAGGTA
TACTCCGTATCTCTTTTTTCTTGCTCGGGGGCACCTGCTAGACGTATCCA
CTCCTCTGTTCTGTCTCTCCGTTCATCTTGCTCACCCCCACCCTGCCTAC
GACACCCCCTCTCCAGCAGGCTCGGCCACGGAACCCCCGCTACGGTCTGC
ACCTCGAAGATGGTGACGACAGCGGCCGTCCTGGGAAGCGCCGTTCGAAG
ATCAAAGCGTGGCTTGGTTTGCAAGCATGCGGGTCTTGACTGCTGGTGCT
ACCGGTGGTGGTGCTGGTGGTGGTTCGGAACCCGAAGTTGGAGGGGACGC
CGCACGAAGTAGGAGAGGTAGAGGGGTAGGGCGAGTCTCCTCGCACTTGT
TGACGCTGCGGCGGACGCGCGGGACTTGGAAGGTGACCAGGCGTTAGCGG
ACGACGGAAAAGAGCCTGAGTATGTAAAAGCGGCGTGACAATCGGTGTCG
TGGTTCTTCGTGTTCATCGAGTCGCTCGTGTCTGTCGTCTACATGCATGC
ACGCGTGGAGAAAACACGCAAGACGGTTTGCCGGTCGGTGGTGCAGGTGG
TTGCAAGGTGCAGGTGTTGGTTCCGGCATATGCTGTTGCCCGTGGACTGG
ATGGATTGGTGTGTTTACTTCACCCGCCTCTCAGTTGGATGACCAGCCTG
CTGTCCTCTTTGGCATGCCGCTGGAAAGTCGTGTCACAGCAGAGGTGGCA
CTGTATCTCACCGTGTTTGTTCGAAAGTAGCCGGGTTGTAGTATGTGGTT
GCTAGGCTGGCGTTTACGATATATCGTGTGTTATTAAAACCTTGAAACGG
CCTGGTTGTAATATTTCGCCGTAGCATTGATCATCCGCTTATCGCCTGTG
GCAAAAAAGGATTGTATAACGCTCTACGGCAAACGTACGGGATGGTCGGA
GTTACCCTGCTGTCGTTTTGGGACGCATGCAGTTTTGTAGCGGGTGTTGC
TTTCCGACCCCCGGCTTTGACTCCTCCAACGTGCTCACAACAAGGACAGC
AGTGTGCGTATTTGTTGGCAGAGAAAGAACGAGACGGGGGATCGTTGTGG
AGGATCGCCGATGGATTCGTGGTCGCGTGTTGTTCGTTACCGTGCCTTAT
ATTAAGAGGAGCGAGATCGGGATGCGGCTCGGTTGACGAATGATGCAGCT
TTTTTTGTTTTCAGCCGCTAGGCCGTGTGTGCTCCAAGTCTGCAACAGCG
ACAAGATTTAAGTGTACTAGTATAAGCAGAAGCTGGATGCTCCAGAGTGC
TCTCACATGCATGTTGTGTTTTACCCCTCACTGCTGTACTGGTGTCGTGC
CTGATGGCACGAGAAACCGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12653:2639..5309- >mRNA_L-elsbetiae_contig12653.2143.1 ID=mRNA_L-elsbetiae_contig12653.2143.1|Name=mRNA_L-elsbetiae_contig12653.2143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig12653:2639..5309- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGTAGGCGGCGGTGGCGGTGGCGTTCGTGGTGCCGCAGCCGTGGG
TGCAAGCGGGAGTGGCGAAGCTGTTGTCGCTGATCGGATGACGTGCGCTA
CCGCCGGGAGGCGGTGCACCGTGCCCGGTACTCGCCGTGGTAGGGTTATG
GCCACGGGCGCGATCGTCAGCTCAATCGCCCCTAGAAACGACGCACCCCA
CGTTTTCCGCAGCACTTCGCCCTCCGAGTTCGGACGGGTGCATGGCGGGT
GCTGGTGTGTTCAGTGCGCCCCCATCCTTGCCCTGCATTGGGAGACGGTG
CTGGTCATCGACGCCAACGGACACGCTTACGAGCTACCATTCGCGATCGA
AAGCAGTTCTCTGTTGGTGGCACACGTGCGGAAGAAGCAGAGGGGTCGCG
AGCGGCGATAGATGGGTGTAGGCGGCGGTGGCGGTGGCGTTCGTGGTGCC
GCAGCCGTGGGTGCAAGCGGGAGTGGCGAAGCTGTTGTCGCTGATCGGAT
GACGTGCGCTACCGCCGGGAGGCGGTGCACCGTGCCCGGTACTCGCCGTG
GTAGGGTTATGGCCACGGGCGCGATCGTCAGCTCAATCGCCCCTAGAAAC
GACGCACCCCACGTTTTCCGCAGCACTTCGCCCTCCGAGTTCGGACGGGT
GCATGGCGGGTGCTGGTGTGTTCAGTGCGCCCCCATCCTTGCCCTGCATT
GGGAGACGGTGCTGGTCATCGACGCCAACGGACACGCTTACGAGCTACCA
TTCGCGATCGAAAGCAGTTCTCTGTTGGTGGCACACGTGCGGAAGAAGCA
GAGGGGTCGCGAGCGGCGATAG back to top
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