mRNA_L-elsbetiae_contig1265.2140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1265.2140.1
Unique NamemRNA_L-elsbetiae_contig1265.2140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1265.2140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1265contigL-elsbetiae_contig1265:26379..27710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1332
Cds size954
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.375857-UTR-L-elsbetiae_contig1265:26378..267561622815455.375857-UTR-L-elsbetiae_contig1265:26378..26756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 26379..26756 +
1691682906.3031397-UTR-L-elsbetiae_contig1265:26378..267561691682906.3031397-UTR-L-elsbetiae_contig1265:26378..26756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 26379..26756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.3876517-CDS-L-elsbetiae_contig1265:26756..277101622815455.3876517-CDS-L-elsbetiae_contig1265:26756..27710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 26757..27710 +
1691682906.3112876-CDS-L-elsbetiae_contig1265:26756..277101691682906.3112876-CDS-L-elsbetiae_contig1265:26756..27710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 26757..27710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1265.2140.1prot_L-elsbetiae_contig1265.2140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1265 26757..27710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1265.2140.1

>prot_L-elsbetiae_contig1265.2140.1 ID=prot_L-elsbetiae_contig1265.2140.1|Name=mRNA_L-elsbetiae_contig1265.2140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=318bp
MEGRFEYRPPPPPSPSASGSSSSDSGSGSETSDEDLDEDDTRGINNSSIS
PSGRDATRGVESAFKVPPPLLSGAEEAVSAAPVAEERASMYASPEASASS
APSPSRHQDHPPSSPSTQAPCTSAPAAETEADTAVGRAARQPSTSPSPSP
SPSPSPSPSRKRGRQSTTMAGVKAADSGQPSCPPPQIPAAAETAAVPTAS
TTPSSASSPSTERDRPPSSPSTYSPPTPEAEGGVAVGTVIASPRQASSPK
RQQDRPRKTSPAPGAAAVAPLQPQPSPMAAAAAVTPPQPQPPSKPAAARA
APDQASSPKRPRGRSRKA
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mRNA from alignment at L-elsbetiae_contig1265:26379..27710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1265.2140.1 ID=mRNA_L-elsbetiae_contig1265.2140.1|Name=mRNA_L-elsbetiae_contig1265.2140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:26379..27710+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCCCCTGCTTGCTCGCATGTCCAACCGAACTGAACTGCCCTGACTGGT
CGATCTCCAAAGATACACTGGCCTAGACACGCTCACTGCGAGGTGTTTCG
TGCTAGCTCTACTCTCTTGGAGCAGGAAGCCGTAGATACGGCCCGTCAGT
GCCGTGGTTTGGACTGGAATCCGCTGGGAAAACCACCAACCTAAACAGCG
AATACCCCACCCCTACACCCGTACGACCCACTACCGACTGACTGCTGGCT
GGAAGTGGTGTGGGCTGTTTAGAGATACATCAACTCGTAGCGAGCGGATG
ATGTAGGTGAGACCAAATATCAAAGCCCCACCCAACCAACCATCCCGGAG
AAACGTCGCGCAAGAGAGAGGGGCCAACATGGAGGGGCGGTTTGAATATA
GGCCGCCGCCGCCGCCCTCCCCGTCGGCCAGCGGAAGCAGCAGCAGCGAC
AGCGGCAGCGGCAGCGAAACAAGCGACGAAGATCTTGATGAGGACGACAC
CCGCGGTATCAATAATAGTTCAATCTCCCCCTCTGGCCGTGATGCTACAA
GAGGTGTCGAGAGCGCCTTCAAAGTACCACCACCCCTGCTGTCCGGAGCT
GAAGAGGCCGTAAGCGCAGCGCCGGTAGCAGAAGAGCGCGCAAGCATGTA
TGCGTCGCCTGAAGCTTCCGCGTCGTCGGCTCCTTCACCAAGCCGTCACC
AAGACCACCCGCCTTCTAGCCCCTCTACGCAAGCACCATGCACATCGGCA
CCGGCAGCAGAAACGGAAGCAGACACAGCTGTAGGACGAGCAGCCCGGCA
GCCTTCGACTTCGCCTTCGCCTTCGCCTTCGCCTTCGCCTTCGCCTTCGC
CAAGTCGTAAGCGTGGCCGCCAAAGTACCACAATGGCGGGCGTCAAGGCC
GCGGATTCGGGCCAACCATCTTGCCCACCGCCGCAAATACCTGCAGCCGC
GGAAACAGCAGCAGTACCTACGGCAAGCACAACCCCATCGTCAGCTTCTT
CACCAAGCACTGAGCGAGATCGTCCGCCGTCGAGCCCCTCCACTTACTCA
CCACCAACACCGGAAGCAGAAGGAGGGGTTGCAGTAGGGACCGTGATTGC
TTCACCCCGGCAGGCCTCTTCACCGAAGCGACAGCAGGACCGTCCGAGGA
AGACCTCGCCGGCACCAGGTGCAGCGGCCGTGGCACCACTGCAACCACAG
CCCTCACCCATGGCAGCAGCAGCAGCCGTGACACCACCGCAGCCGCAGCC
CCCGTCAAAGCCAGCAGCGGCCAGAGCAGCTCCCGACCAGGCCTCTTCGC
CGAAACGACCTCGGGGCCGTTCGAGGAAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1265:26379..27710+

>mRNA_L-elsbetiae_contig1265.2140.1 ID=mRNA_L-elsbetiae_contig1265.2140.1|Name=mRNA_L-elsbetiae_contig1265.2140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:26379..27710+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGGCGGTTTGAATATAGGCCGCCGCCGCCGCCCTCCCCGTCGGC
CAGCGGAAGCAGCAGCAGCGACAGCGGCAGCGGCAGCGAAACAAGCGACG
AAGATCTTGATGAGGACGACACCCGCGGTATCAATAATAGTTCAATCTCC
CCCTCTGGCCGTGATGCTACAAGAGGTGTCGAGAGCGCCTTCAAAGTACC
ACCACCCCTGCTGTCCGGAGCTGAAGAGGCCGTAAGCGCAGCGCCGGTAG
CAGAAGAGCGCGCAAGCATGTATGCGTCGCCTGAAGCTTCCGCGTCGTCG
GCTCCTTCACCAAGCCGTCACCAAGACCACCCGCCTTCTAGCCCCTCTAC
GCAAGCACCATGCACATCGGCACCGGCAGCAGAAACGGAAGCAGACACAG
CTGTAGGACGAGCAGCCCGGCAGCCTTCGACTTCGCCTTCGCCTTCGCCT
TCGCCTTCGCCTTCGCCTTCGCCAAGTCGTAAGCGTGGCCGCCAAAGTAC
CACAATGGCGGGCGTCAAGGCCGCGGATTCGGGCCAACCATCTTGCCCAC
CGCCGCAAATACCTGCAGCCGCGGAAACAGCAGCAGTACCTACGGCAAGC
ACAACCCCATCGTCAGCTTCTTCACCAAGCACTGAGCGAGATCGTCCGCC
GTCGAGCCCCTCCACTTACTCACCACCAACACCGGAAGCAGAAGGAGGGG
TTGCAGTAGGGACCGTGATTGCTTCACCCCGGCAGGCCTCTTCACCGAAG
CGACAGCAGGACCGTCCGAGGAAGACCTCGCCGGCACCAGGTGCAGCGGC
CGTGGCACCACTGCAACCACAGCCCTCACCCATGGCAGCAGCAGCAGCCG
TGACACCACCGCAGCCGCAGCCCCCGTCAAAGCCAGCAGCGGCCAGAGCA
GCTCCCGACCAGGCCTCTTCGCCGAAACGACCTCGGGGCCGTTCGAGGAA
GGCCATGGAGGGGCGGTTTGAATATAGGCCGCCGCCGCCGCCCTCCCCGT
CGGCCAGCGGAAGCAGCAGCAGCGACAGCGGCAGCGGCAGCGAAACAAGC
GACGAAGATCTTGATGAGGACGACACCCGCGGTATCAATAATAGTTCAAT
CTCCCCCTCTGGCCGTGATGCTACAAGAGGTGTCGAGAGCGCCTTCAAAG
TACCACCACCCCTGCTGTCCGGAGCTGAAGAGGCCGTAAGCGCAGCGCCG
GTAGCAGAAGAGCGCGCAAGCATGTATGCGTCGCCTGAAGCTTCCGCGTC
GTCGGCTCCTTCACCAAGCCGTCACCAAGACCACCCGCCTTCTAGCCCCT
CTACGCAAGCACCATGCACATCGGCACCGGCAGCAGAAACGGAAGCAGAC
ACAGCTGTAGGACGAGCAGCCCGGCAGCCTTCGACTTCGCCTTCGCCTTC
GCCTTCGCCTTCGCCTTCGCCTTCGCCAAGTCGTAAGCGTGGCCGCCAAA
GTACCACAATGGCGGGCGTCAAGGCCGCGGATTCGGGCCAACCATCTTGC
CCACCGCCGCAAATACCTGCAGCCGCGGAAACAGCAGCAGTACCTACGGC
AAGCACAACCCCATCGTCAGCTTCTTCACCAAGCACTGAGCGAGATCGTC
CGCCGTCGAGCCCCTCCACTTACTCACCACCAACACCGGAAGCAGAAGGA
GGGGTTGCAGTAGGGACCGTGATTGCTTCACCCCGGCAGGCCTCTTCACC
GAAGCGACAGCAGGACCGTCCGAGGAAGACCTCGCCGGCACCAGGTGCAG
CGGCCGTGGCACCACTGCAACCACAGCCCTCACCCATGGCAGCAGCAGCA
GCCGTGACACCACCGCAGCCGCAGCCCCCGTCAAAGCCAGCAGCGGCCAG
AGCAGCTCCCGACCAGGCCTCTTCGCCGAAACGACCTCGGGGCCGTTCGA
GGAAGGCC
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