mRNA_L-elsbetiae_contig1265.2138.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1265.2138.1
Unique NamemRNA_L-elsbetiae_contig1265.2138.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1265.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1265contigL-elsbetiae_contig1265:16420..22391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.8129194-CDS-L-elsbetiae_contig1265:16419..164641622815455.8129194-CDS-L-elsbetiae_contig1265:16419..16464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 16420..16464 -
1691682906.381508-CDS-L-elsbetiae_contig1265:16419..164641691682906.381508-CDS-L-elsbetiae_contig1265:16419..16464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 16420..16464 -
1622815455.8227832-CDS-L-elsbetiae_contig1265:22100..223911622815455.8227832-CDS-L-elsbetiae_contig1265:22100..22391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 22101..22391 -
1691682906.3928185-CDS-L-elsbetiae_contig1265:22100..223911691682906.3928185-CDS-L-elsbetiae_contig1265:22100..22391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 22101..22391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1265.2138.1prot_L-elsbetiae_contig1265.2138.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1265 16420..22391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1265.2138.1

>prot_L-elsbetiae_contig1265.2138.1 ID=prot_L-elsbetiae_contig1265.2138.1|Name=mRNA_L-elsbetiae_contig1265.2138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRGAVFCAIIALWALIDGTSAVARAGGTGPRAGKSRGSSRRSDGSSSVGD
RDRSGKTTKAARRRRGNTVPSHDGAQNVGRDSVRVVVGAVREERGHQQHG
TRKRLWDEDDAE
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mRNA from alignment at L-elsbetiae_contig1265:16420..22391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1265.2138.1 ID=mRNA_L-elsbetiae_contig1265.2138.1|Name=mRNA_L-elsbetiae_contig1265.2138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5972bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:16420..22391- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGGGGCCGTCTTCTGTGCGATCATAGCACTGTGGGCCCTTATCGA
TGGAACATCGGCAGTGGCACGAGCCGGTGGCACCGGACCGAGGGCTGGCA
AGAGCAGAGGTAGCAGTCGCAGGTCGGATGGAAGCAGCTCAGTCGGAGAT
CGAGACCGTTCGGGAAAGACCACCAAAGCAGCGCGACGAAGGCGCGGCAA
TACAGTACCCTCCCACGATGGGGCACAAAACGTTGGGAGAGATTCGGTGC
GGGTGGTGGTCGGGGCCGTCCGGGAAGAGAGGGGGCATCAGGTGAAGAGG
AAAAGCCTTCTGTTTGGCAGGATGAAAAGATTCATGTCATTCTTTTTCCG
CGGGGCAACCAACAACCAACGGCCAGAAATCATGCGCACAACGCTGGCCC
CCTCACCAGGACGGTCCTATGTGTGCGGCCTGGCGTTCGAGTCGTTTCCG
ATGCATGAACGCACGGTCATATATCGCGGATGGTGCTTGAAGCCTTATTA
GCTTATTAGCAACAGAAGTGTCCAACCTTCAAATACGGGAGCACAGGAAG
GCGACGCGTGTCACACACACCGCACGCGCACAGCAGCAGGGTATGGCTTG
TACTGTCTACATATGATGTAAATCTCTCCATGTTGGGGCAGAAGATTCCA
ATTTCTCCGTAACTGGTTTCTACCTCGGGCGCCTTCCGTAGGCGATTGTA
CGTGTCCATAGATATTGGAGTTAGGCTCGTGGGAAAAAGTAAGACTGGTT
TTGGGCTCTACAGGACGGAAACAACGCGAAAAAAAATTGTTGCGACGAAT
TCAAGTTCACCACCCACGCGCGTTTCGTAAAATGTCCACCACGGCAATCG
ACTGCGCTGGGTCGAAATAGATACAAAGCAAACAAAGTTTGAGGTCGTCC
GATAAAAATTCCAATATCTACGGGCACACGAAGTTTGGCGGCGTGACCTG
TCAAATGTCGTATTCTTCTCCCAGATTCTTTTTTTTTGGCATGAGTGTGC
ACAGCAACGAGGTCTACGGTCTGAAACCACCATGTCATCACAGACAAAGG
CACTAAGTAGGCTCTGGTAGGTGCGAAGTCTCCATGCTTGTCTCCACGGG
CCTGCTGTAGAGCGACAACATGTTCCCCTCCTCTAACTTTAAGTCAAAAC
GCGGGGAAACTTGGGGGACATGGGGGCCCGCTATCGATGGGTATCCCCCT
ACGCTGCGTACCCCCTCCATACTAACACTCATATGTATATTCCGGAAGTC
CTTGGAACTACCACTTCCCGGACCGGTGACCAAAATCTGACCCATGGAAT
CCTTGTCTAAGTGGGAAGAGGCGTCTACAACCGGTTTTTTTGAGCTTAAA
GCGGGGTTGGGAACACTCCGAACCGGGAACACGTACACTCGATCTCGGAA
GGCGCCCTCGACACACGTGTTGCACCTCCCACAAAAACGAGACTCTTTTT
TGTTTTGGTCCTCAAAATACGATCCCACGCAGCCCCCCCGACTGAACTTA
CACACCGGAGAGCACAGTTATTTCACCTAAGCTCTCTTGCTGTAATGTTG
ATCCCTAATTAATCCAGGCACCTACAGCTTTCTGTACACATCACCAACAG
AGTGCCAAAGTGGCAGATCGATTGGCCAAACACAGAGCTAGACGCTCCCG
CTCGATCAGACGCGGCGAAGGAGCGTTTTCAGATCATTTTGGAGGCAGAC
AGGCGAGCGTGCTTTGCGTGCTTTGCGTGCTTTGCGTGCTTTGCCTCTCT
CTTGATCAGAGAGGCGGAGTTGGCTTGAGTGCCACAGAGAATTGATCCCT
AATTATCCAGCCCGGTGTCCCTTCTATGCCCAAGTATATCTACGGTCGCA
GAGTTTCGAGAGATTTGGTGCACTCCTGAGCTGGACGCTCACGATTGAAA
ATGCCTCCCAAGCTGCGGAATTGAGCTGAAAAAAGCAGCAACTTTTAGTT
TCTGTCGTGCACCGGTCACCCAGCAGCTCCCCTCTTCTGAGACAAATTGC
GGAATAACGACTCCTTGCGGACGTACGGAATAGGCATCCTGAGGCCTCCT
GCTCTGCTCGTTGCAACTGGTTGCGTATGTGAGGAGCATCAACAGTCACG
AAGTACACAGCCGCGTGGGTTCAGAGCAAACAAAAATAGGGAGGGGACAC
GAAAACAAAACCCCGCCCAACTCTAATGCCTCCAATTTTAAAGACATTTT
TTTTTTTTATGTGAGAGGTGCAACACGTGTATCGAGGGATCATAATGCAA
AACTGAAGCAAAATCTACGACGAAAAATCTTGATCCCGCCGATTGTCTCG
AAGCTCACGAAACCTCAAGCGGTCTGCTTGCGCCGGTGGTCTTCCGTAAC
CATCCCGACCAGGGGGCACGACGTCTTACGGCTCGCCTCGTCGAGTTGAC
GGAGCGGCGTCGTCTTGAGTGTGTAGACACACCGAGTCCAAATCAAAAAT
CGCGAACGCCCGAAAAATGCGGCCGGTTGCTGGATATCTAGATATGTAGT
CTAGATACATATGGAACTCTTCTGGCGGGGGCCGGATACATACCAGTTCC
TACTTCGTACGAAGCCACGCGCTCAGTATCGAATCTTGCGACGAAGGAGA
CAGTGTCTAACACCGTCACTGGCGCCTCTCCGCCAGGAGCTCTCACCTAC
GATCATTGTTGTCAACCCTAACTCGGCAACGGAGACAGCTATAGACTCGA
CAAGAAGTTGGTCGGTGCGCACAGGCATTGCAAGGATTATTGTGTGAGCT
TATTGGGGCGATCTGTAAGCTGGAACCACCCAGCTGAGAAACCTGTACGG
CTCGTCAACGCGTACATGCCTTCAGAATTCAACATGACAAAAATCGGCCA
TTTGGGATCATTTTCGACTAGTTTTTGGGTTTACGCGCAAACAACAGAAG
TAATGAGAGCGAATTAATCCTTCATTTCGAACGATGTGTAGTGGTCTCCG
TGTGGTGTAGCGAGCGCGGAGGCTTGGCGAACCCACCCGCACATAAAAAA
AATACCGGCGGGCCTCCCTTCGGGAACGTGCGCGGAAAAACTCTTTCCAA
CCCGTACTTACGGTCGGGATCGACATGCACACACGCATACCTAAGCAGTA
TACTATTCCTCTTCTCGTGGCTTGTGTGTGAACTGCTCTGGGCGTGCGAA
ATCAGCTATGTAGCTGTGAAAACTACAGCTAGCTTGCGGTCCGAAAATAC
CCAACCCACACACGCTATTATACTTGTTGTACAGCAGAGGTGTTAAGTAC
GGAGCAACACTGCTGCAAGTCTACACAAAAACTAGTGGGATGTCTGTAGA
CCAGAGCTACAACTTGTGCATCAGCGCTGCTGTAGTAATGCGGAGCGAAA
CTGCTGTGAGTCTATTACTACTAGTCTACACATCACTACATACATAGTAT
GTAGATGGTGTCTGAAAACCAGAGACCACTTTACGCACAAATCTGGCCGC
GAAACCCTACTTTGGGCCGGCATCAACACGCGCACATGGTTTCATACGGC
GGTGGGGTTGGTCCCCTGCCCGCTCTCCTCCATACAAGGCGGCCGTTCTC
GTGCAACGAGTGTGTATGTATATACACATGTGCGGAGCGTATACATTTTT
AGAAAAATACACTAATTAATAAAAATAATCCGGAGATCGGGTGTTGCGGT
GTTCAAAGCTCCCGCAGAGGAGATCTGCGGGCCGAACACGAACATTCACA
AAAAACGAGACTGACTACACGTATTACAGCAGTATAACGTGACCACGATG
CCAATAATATAACGACGCGATGACCTAAACAAACTCTAGCACACACAGCG
GAGTTGTTGGACAACACCCCCGGCGAAGAGAAGCCCAAGTTTTGACGTCT
GGGGCATGCGCTTCGCTCTGCGGCGGGCGGCGCGGCACTGCGCGCCTGCC
GGCCCATACTGTAGCTCTCGCCTGGCAGAGCGGCAAGTTGTTTCGTTCTG
CAGCGGGCGGCGGCACTGCGCGCCTACCAGCCCGAACCTCTCGCCAGGCA
GATCAAGCTCGCGGCCAACAGGTCTCCTAAGAAACGGCAAAAACTGAACA
TGGAGACTTCTGCCTAAAAGCAATATACTACAATAGGTGATCTGCATCAT
GCACTGCTACATACTTCATATTATATTTTATTATGTAAAACTTTAACTAT
ATATTTTGACCGGCGTTCCAAGTTTCCAGCCTATCCGTCGCGTGCGGACG
GTGGGGATGAGATCATTGATGGTTTCATGCCATATATGGCAAGTAATACG
CGCACGTTTTTGGTTTTTCTCGACCGCGTGCACCGTTTCATTGTGTTGAT
TGATATTATACGACAGACACCGGGGCGTACCATTTTTTCACCTTATTTTC
TCAAGGTAGCTCTTCTGGTCATCTCCATGACCATTATGTGCTACACGCAT
GTTTTTTCCAAATCAAAGACCCTGTCTGTGGTTCGAAGTAAAAGATGATG
AAAGTGGAAGTCGCCCGTCAGGGCAATCTGTAGATGCAAAACAGAGTCAG
CGAGACCGCTCGTATCCGCCGTCTATGTGGTGCAGCTTTGTTACTGGAGC
AACTTATCTTCTCGGGAGGAAAAAACTAAAAAAACTAAAAAAATGTGCTT
CCTCTCCAAAATGCCGCGGAACACAAGAGTGCTCGTTCCCTCGTTTCCCT
CTCAAACTCTCAAACCCTCTCAATTTATCTCGGTAGGAAACCTCTGAGAG
AGTAAGCACCCTATAAAATACCGTAGGTGACACAAGATATCACACCCCCT
GGGCCGAATTTAGAGCTCCATTACTCCGTTACGAAGAAGGTGCCAGCACC
AAACGACACATTTTCGGACAGCCCTCGCTCAGGAGATCTTTCCAATGCAC
CCCCTTTCGGCCCTGGCGCTCTTCTTGCTGGGGAGGAATCGAGCTTTGAA
AATATGTCCAGGGGGTGTGGTATCTCGTGTCACTTACGGTAGTTTGGGAT
CCAGGCTGAAGGCCCCCGTAAACTTCGTCAGGGAAGCTCTGCCACACCCA
GCATTCGTGTGTAACTTTCAGAGTGTCCGCCATGGGTCCTCTCGACGAAA
TTCCAGCTGTGAATTTCCCTATACGAAACGTCCGAAACGGGGTGTGTCGC
ATTCTATCTCCGTTTTGTAAATATACTTATATGAAAACCAAAATTCTCGC
AGAAATTCCCTAGTATACTTTGGCCTCACAAGTTATGAGGTTAAATACTC
TGCTTTGCGCTCATGCACTTCATACAACCTATTGTAGTTTACCGGCGATA
CGTATGTATTCCTGCCTTTTGGCCGGGAGAGCTTCGTTAGGGTCCTGTCG
TGACGCGGAAACGGCCGGGGCGTTCCTAGGTTCGCCCGCCTTTGGAAACC
CACAACTCTTAGCCCTGCAGTACTGTAGCACAAAACTTTGGACAGTGGTT
ATGTACCTCATACACCATATAGTCTATTTAGGTCGCCGCACGACGGGGTG
TAATCTAGGTCGCGCTTGGTGAGTGCTAGGACGTGGCGTGTTGTCTAACC
TTGCGCCGCACTGGGACGTCGCTTTGTACCATCGGTGTATAGTGTGTATG
GGTCGCTGTGAATGGTATACAGCCCCTTGGTCACTGCTCATCAGCTTAGA
CTCGTGCATACAAGTTTTTTTCCGTGCCCCCCCCTTCTTTTTTTTTTGGG
CCGCCGAGAAAACACGGGGTTGTGCCCTCGTTTGGCCGTGTTCTCACCGC
GTGATCCTGATGCGGGGGGACCTACTGTATTATATACATGCATCAGAACC
AGAACGCCGCCCCATGCCTTGCCGCGGTGAAGACGTTTCGACCCTTACGC
TTCGAAACTCGCGCCACAAAAACCAAGCTGAGCGCCGCGCGCACGTTCTC
CCGCGAAACACGCGCCCGCACGCTGCCTGCTGATGTCTGCATACCACACG
TGTGTTACGTACGCGATACGATAACAGCAGCATGGCACTAGGAAAAGGCT
GTGGGACGAGGACGACGCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1265:16420..22391-

>mRNA_L-elsbetiae_contig1265.2138.1 ID=mRNA_L-elsbetiae_contig1265.2138.1|Name=mRNA_L-elsbetiae_contig1265.2138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:16420..22391- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTGGGGCCGTCTTCTGTGCGATCATAGCACTGTGGGCCCTTATCGA
TGGAACATCGGCAGTGGCACGAGCCGGTGGCACCGGACCGAGGGCTGGCA
AGAGCAGAGGTAGCAGTCGCAGGTCGGATGGAAGCAGCTCAGTCGGAGAT
CGAGACCGTTCGGGAAAGACCACCAAAGCAGCGCGACGAAGGCGCGGCAA
TACAGTACCCTCCCACGATGGGGCACAAAACGTTGGGAGAGATTCGGTGC
GGGTGGTGGTCGGGGCCGTCCGGGAAGAGAGGGGGCATCAGATGCGTGGG
GCCGTCTTCTGTGCGATCATAGCACTGTGGGCCCTTATCGATGGAACATC
GGCAGTGGCACGAGCCGGTGGCACCGGACCGAGGGCTGGCAAGAGCAGAG
GTAGCAGTCGCAGGTCGGATGGAAGCAGCTCAGTCGGAGATCGAGACCGT
TCGGGAAAGACCACCAAAGCAGCGCGACGAAGGCGCGGCAATACAGTACC
CTCCCACGATGGGGCACAAAACGTTGGGAGAGATTCGGTGCGGGTGGTGG
TCGGGGCCGTCCGGGAAGAGAGGGGGCATCAGCAGCATGGCACTAGGAAA
AGGCTGTGGGACGAGGACGACGCCGAGCAGCATGGCACTAGGAAAAGGCT
GTGGGACGAGGACGACGCCGAG
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