mRNA_L-elsbetiae_contig1265.2137.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1265.2137.1
Unique NamemRNA_L-elsbetiae_contig1265.2137.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1265.2137.1 vs. uniprot
Match: D7FVP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP9_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 3.120e-54
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2
Query:   11 PSGKNKARAKGGVMKSVGKATGSSMKAMVHALQPKSVGLGEILDTWKIEQIIGKPPGRVTKCAATVEFRRDGTVATSFDGRESVSDFTFRAHAWPRACTIE 313
            PS   K +A GGVMKSVGKATG SMKAMVHALQPKSVGLGEILDTWKIEQ++GKPPGRVTKCAATVEFRRDGTVATSFDGRE+VSDFTFRAHAWPRACTIE
Sbjct:  238 PSSMQKTKATGGVMKSVGKATGKSMKAMVHALQPKSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIE 338          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1265.2137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVP9_ECTSI3.120e-5490.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1265contigL-elsbetiae_contig1265:11981..16039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue2.4e-42
Seed eggNOG ortholog2880.D7FVP9
Hectar predicted targeting categoryother localisation
EggNOG OGs2ETV1@1,2SW46@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size411
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1265.2137.1prot_L-elsbetiae_contig1265.2137.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1265 12948..15990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.6503646-UTR-L-elsbetiae_contig1265:11980..120021622815455.6503646-UTR-L-elsbetiae_contig1265:11980..12002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 11981..12002 -
1691682906.3195593-UTR-L-elsbetiae_contig1265:11980..120021691682906.3195593-UTR-L-elsbetiae_contig1265:11980..12002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 11981..12002 -
1622815455.6620448-UTR-L-elsbetiae_contig1265:12922..129471622815455.6620448-UTR-L-elsbetiae_contig1265:12922..12947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 12923..12947 -
1691682906.3289905-UTR-L-elsbetiae_contig1265:12922..129471691682906.3289905-UTR-L-elsbetiae_contig1265:12922..12947Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 12923..12947 -
1622815455.7125747-UTR-L-elsbetiae_contig1265:15990..160391622815455.7125747-UTR-L-elsbetiae_contig1265:15990..16039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 15991..16039 -
1691682906.373007-UTR-L-elsbetiae_contig1265:15990..160391691682906.373007-UTR-L-elsbetiae_contig1265:15990..16039Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 15991..16039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.6795752-CDS-L-elsbetiae_contig1265:12947..129821622815455.6795752-CDS-L-elsbetiae_contig1265:12947..12982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 12948..12982 -
1691682906.3389583-CDS-L-elsbetiae_contig1265:12947..129821691682906.3389583-CDS-L-elsbetiae_contig1265:12947..12982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 12948..12982 -
1622815455.691788-CDS-L-elsbetiae_contig1265:14133..143021622815455.691788-CDS-L-elsbetiae_contig1265:14133..14302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 14134..14302 -
1691682906.3468983-CDS-L-elsbetiae_contig1265:14133..143021691682906.3468983-CDS-L-elsbetiae_contig1265:14133..14302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 14134..14302 -
1622815455.7013955-CDS-L-elsbetiae_contig1265:15879..159901622815455.7013955-CDS-L-elsbetiae_contig1265:15879..15990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 15880..15990 -
1691682906.360172-CDS-L-elsbetiae_contig1265:15879..159901691682906.360172-CDS-L-elsbetiae_contig1265:15879..15990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 15880..15990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1265.2137.1

>prot_L-elsbetiae_contig1265.2137.1 ID=prot_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MKSVGKATGSSMKAMVHALQPKSVGLGEILDTWKIEQIIGKPPGRVTKCA
ATVEFRRDGTVATSFDGRESVSDFTFRAHAWPRACTIEVFRHLVRSQGFP
GTVG*
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mRNA from alignment at L-elsbetiae_contig1265:11981..16039-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1265.2137.1 ID=mRNA_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4059bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:11981..16039- (Laminarionema elsbetiae ELsaHSoW15)
GGGTCCGCCGCCGTCCGGTAAAAACAAGGCGAGGGCCAAGGGCGGCGTGA TGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAGGCCATGGTGCAC GCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCTGGACACCTGGAA GATCGAGCAGGTATATATGTATATACACGATAGGTACATGGAAATGGAAG CATGTGTGTGAAGAGGGAGCAGGTTCATTTTTTTTTGTTTTTTTTTCCGC CCATCACTGGCATATTTGTCGTCTGCCCCGCTGGCCCCCTTCCTCCACTA CGACTAGCTAGACGACCCAACCGGGGTCACACAGATATATGTACGTATGT TGTTGTTGTTGGTGTTGTTTTTTTTTTTACATTGAAAAGCACGTGTGTAC AGCAGTAGTACGCTTTTGTCGGATGGTCGTGTGTGCGCGTGCGTACGCGG TCCTCTTAATATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAG AGCAAAGACTCGATATGGGGTTCAAACGGTATTCCATACAGGGACGTAAT ATTTGGCGAAGCGAGCAGAAAAACAACCTAAACATCAGAAGAGTTCAACA TCTCCTCTGCAAAGATTTAGATTTGCGAGGTCCCTTTTGTTCGCATCTTT TGGTGATTACGCGGCGGCGTCGGCCTACCTACCGTGCTTATACTTGTATG TACAACGTGCCGGGGCTTTCTGCTGGCCGGCTAAAGAGGAGGTTCGTTGT CGCGCGCTGTGAAGGGGTTTTAGAATTGACGTGGTGCTCTCCCTCGACTG TCCGGCCCCCCGGAGAGTGGGCGTTGCCTGTCTGCATCCGCGGGTTGGTG TTGTCCTGGGTATAACGCGAGCTGCAGTCTACGACGAGTAGTCCCGTTAG TGCCGGCTCTGCGCCTCCTACATACTGTGTAGAAGTACCGTAGGTGACAC AAGATACCACACCCCCTGGACAGATTTTCACAGCTCGATTCCTCCTCAGC AAGAAGAGTGCCAGTGCCAAAAGAGGTTGGCGTTGGAAATATCTAGTCGA GGGCCGTCCGAAAACGTGTCATTTGGTGCTGGCACCCTCTTCGTTACGGA GAAATGGAGCTTTAAAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTCACC TACGGTAGGGTCTTAGTCTTGCTTGCGGCCGTCGACCGGCACCACCATCA TAGCTTCCGCTCGTCACAGAGGCATGGACATTTTGCGACCAAATAAGCAG CGGTTCTGTCATCATGCACCTATATACACGAAGTAGTACTCCGTCCATAA AATATGAATTAACATGGAACATTTTTCATTTTCGGCTAGGAATGTACACG AGTACGCCGCACACATGGATGTATATTTACTTCGTGCAAATGAGGTTTCT GACCATGCAGCACGCGGGTTCCATGTATCTTGCCATCGTCCGGTGACCGA CTACTCTGTCTGTCTTCGTCAGTGTACATGCGAGCGAGATGAACCCCCCC CCCTCCACCCTCCACCCTAGTTTCAACTCTGTAGCGTCGATCCATTGATT GGGCGGCGAGCAGCACATCCTCCCGTCCACTCCAGACCCCCCCCCCCTAA CTCGCACGGAATCCCCCGCGGGACCAAGGGGGAAACACGCGTTTTTGTAG ATCATATGTCCATCACATAAACATAATTTATGTGCGTGCACGCACGTCTA TATTTCTGTACATATATATGTACCTGTGTTTCCGTAGATCATCGGCAAGC CGCCCGGGCGGGTAACCAAGTGCGCCGCCACGGTCGAGTTTCGTCGGGAC GGCACGGTGGCGACGTCTTTCGACGGTCGCGAGTCCGTCTCCGACTTCAC CTTCCGGGCGCACGCGTGGCCGAGGGCCTGCACCATCGAGGTATTTAGGC ATTTAGGTGTGTGCGTTTTGCGCTGCGGCGGGCGTGTGCGCTACATATGT ACTCCTATAATAATAGCTGTGCAGTGTTCTTTTTACGCAAGCGCTTGTTG TATCGTTCGACTACATAAGATACACACGTATCTATGTTTTATGTGTTTTC TGTCTCTGTGTGTGAGTATGCATAACCACTTCAACCTTTTATGTGCCAGC GGACAGGCGGATTTCGAGTGTCCAGCCTCACTGTGCACAAAAAAGAGCCC ATCATGCATTGCAACCGCCTAGTCAGACCAAGTATGGAACCTCCCTGGCC TCTTTTGGGGTTTTCACTCCTTCCTCGCCCCAGCAAATGTGCCCAGCAGC GGATCCGGGTAAATGGCTATACCGTAGGTGATACGAGATACCACACCCCC TGGACCGAACTTAAGAGCTCCATTACTCCGTAACCAAGAAGGTGCCAGCA CCAAGCAACACATGTTCGGACAGCCCTCGACTAGATCGTTCCAATGCCGC CTCTTTCGGCACTGGCACTCTTCTTGCTGAGGAGGAATCGAGCTTTGAAA GTCTATCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATACTACATCC GAAGTGTGTGTAGTACTTACACCGGTGGTGTAGGTAGTGTTGTGCTTCGT AGAGAATGTGAGCTCTTTCGGTAACTATTTAGATTTTAGAGAGAGATGAG TCAAGAGGGTTTTCGACGTTACTGGCAGGGCGTGTTGAGGATTCGGCACG TGGTTTGCTGTTTGCTGTTTGCTGTTTGCGTCGTGCCCGGTGCGTGCTTT CTACTGGGTGCCACGTTACCCCGCATGTGCATAGGGTGTGTCTTCGCACT GAGAGTTGCCATATGGCGGGAAGTTCGACGTCAACTGGCGACGCGAACTC AAAAGTAGGGATATTTTGCGTTGGGCACAAGCTATGCCATTACTACAACA GTGTGCTGCTGTGGAGAAAGTGTCATCATAAGTCATCAAGGATGATGCGA CTTGTTGTCTATGCTGGGCTTAAGTTTTTGGCCCCAACCTGACAGCCAAA TGAAACATAATATTGTCTAATCTGATGAACCGAAGGATGTTTGATTTTTC TCTCAACCCCCGCCGCCGCCCCCGTGTTTATTTTTCGTGTGTCGGTGACA AATGAAGTTCGAAGCCAAGGCTTTCCAGGGACCGTGGGATGAAGAACCGG TTTGGAAAGTCTACAAGGTGAACTGCTTTCTCTTCCTGCCGAACCGAACC TGAACTTTTCCGTTTCGGCAGGCGTGGGGGGGCGCTCAGTTGCTGTTCTC GCTTCTGCCGTTGGAACATCCACATCGAGCGCGGGCTTTTCGAGACGATT CACCCTCCGTGCTCTTATGTATGGATGGATGTATGTATGTAGTACAAGAA CCCCTTGGCCTTGTCTGCCTTGTCCACCATGTCGGCCATACCGATGTACG ATCGAGGTCGTTTGTGTCCGTGTTCCGTGCGCCGCAGTTGGGATTGTTCG CGGTGGGGTGCAGGGTACCCGTGAGTGAGCGACCCCTTTTTTCCCATCGA ACTGCTACGTAGCAGAGGTCTGCTTGCTTGCTCTTGAATAGGGAATCGTT TTGCTTCTCTCGACGGGCGGCGAAGGCCGCCAGCTAGATAGATAGCTCAG CTTTATTTGTCTCTTCAAAAGGGCTCATGGTGCGTCGTTTTCACCCCGAG CCTAGTTAAAAAAAACGACAAAAAAAAAGCAGCTCGCCTTTCCGCCGCAC TACAACAGAGCGCCAGACATGAGGCGGCCGCTCCCAACTTTCTAATCCAT CCATCATGAAGATTATTTTCGCGCTTCTTCTGGGATGGAACCAGTGCGTT CGTCGTTGAGCGCTGTGGTGTTGCACCACAGGTATCCTACATTGGCTTGC ACCACCGCTACTATTGTTTTGGTGCTATTTGTACGGCTTGGTGTACTACT TCTGGGGAACGCACGTGTGACTCTCGATGCAGCCGCGCATTGATACCGCA ATGCGCCCCCAGACGGGAGGAAACCCTGCCGCCCCCCCCCCCCACTTGCC CCCCCCCGCTTGTTGGACACTTTATCAAGCCTCGGCCCTCCCTCCTCCCT ACGCCCTCCTCTCCCGTCCCTATCCCGCACCACACAGGGGTCCTTCTCCC GCAAGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1265:11981..16039-

>mRNA_L-elsbetiae_contig1265.2137.1 ID=mRNA_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:11981..16039- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAGGCCATGGTGCA
CGCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCTGGACACCTGGA
AGATCGAGCAGATGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAG
GCCATGGTGCACGCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCT
GGACACCTGGAAGATCGAGCAGATCATCGGCAAGCCGCCCGGGCGGGTAA
CCAAGTGCGCCGCCACGGTCGAGTTTCGTCGGGACGGCACGGTGGCGACG
TCTTTCGACGGTCGCGAGTCCGTCTCCGACTTCACCTTCCGGGCGCACGC
GTGGCCGAGGGCCTGCACCATCGAGGTATTTAGGCATTTAGATCATCGGC
AAGCCGCCCGGGCGGGTAACCAAGTGCGCCGCCACGGTCGAGTTTCGTCG
GGACGGCACGGTGGCGACGTCTTTCGACGGTCGCGAGTCCGTCTCCGACT
TCACCTTCCGGGCGCACGCGTGGCCGAGGGCCTGCACCATCGAGGTATTT
AGGCATTTAGTTCGAAGCCAAGGCTTTCCAGGGACCGTGGGATGATTCGA
AGCCAAGGCTTTCCAGGGACCGTGGGATGA
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