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Homology
BLAST of mRNA_L-elsbetiae_contig1265.2137.1 vs. uniprot
Match: D7FVP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP9_ECTSI) HSP 1 Score: 186 bits (472), Expect = 3.120e-54 Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2
Query: 11 PSGKNKARAKGGVMKSVGKATGSSMKAMVHALQPKSVGLGEILDTWKIEQIIGKPPGRVTKCAATVEFRRDGTVATSFDGRESVSDFTFRAHAWPRACTIE 313
PS K +A GGVMKSVGKATG SMKAMVHALQPKSVGLGEILDTWKIEQ++GKPPGRVTKCAATVEFRRDGTVATSFDGRE+VSDFTFRAHAWPRACTIE
Sbjct: 238 PSSMQKTKATGGVMKSVGKATGKSMKAMVHALQPKSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIE 338
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 177.9 |
Seed ortholog evalue | 2.4e-42 |
Seed eggNOG ortholog | 2880.D7FVP9 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2ETV1@1,2SW46@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 4 |
Model size | 411 |
Cds size | 315 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815455.6503646-UTR-L-elsbetiae_contig1265:11980..12002 | 1622815455.6503646-UTR-L-elsbetiae_contig1265:11980..12002 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 11981..12002 - |
1691682906.3195593-UTR-L-elsbetiae_contig1265:11980..12002 | 1691682906.3195593-UTR-L-elsbetiae_contig1265:11980..12002 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 11981..12002 - |
1622815455.6620448-UTR-L-elsbetiae_contig1265:12922..12947 | 1622815455.6620448-UTR-L-elsbetiae_contig1265:12922..12947 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 12923..12947 - |
1691682906.3289905-UTR-L-elsbetiae_contig1265:12922..12947 | 1691682906.3289905-UTR-L-elsbetiae_contig1265:12922..12947 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 12923..12947 - |
1622815455.7125747-UTR-L-elsbetiae_contig1265:15990..16039 | 1622815455.7125747-UTR-L-elsbetiae_contig1265:15990..16039 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 15991..16039 - |
1691682906.373007-UTR-L-elsbetiae_contig1265:15990..16039 | 1691682906.373007-UTR-L-elsbetiae_contig1265:15990..16039 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1265 15991..16039 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815455.6795752-CDS-L-elsbetiae_contig1265:12947..12982 | 1622815455.6795752-CDS-L-elsbetiae_contig1265:12947..12982 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 12948..12982 - |
1691682906.3389583-CDS-L-elsbetiae_contig1265:12947..12982 | 1691682906.3389583-CDS-L-elsbetiae_contig1265:12947..12982 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 12948..12982 - |
1622815455.691788-CDS-L-elsbetiae_contig1265:14133..14302 | 1622815455.691788-CDS-L-elsbetiae_contig1265:14133..14302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 14134..14302 - |
1691682906.3468983-CDS-L-elsbetiae_contig1265:14133..14302 | 1691682906.3468983-CDS-L-elsbetiae_contig1265:14133..14302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 14134..14302 - |
1622815455.7013955-CDS-L-elsbetiae_contig1265:15879..15990 | 1622815455.7013955-CDS-L-elsbetiae_contig1265:15879..15990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 15880..15990 - |
1691682906.360172-CDS-L-elsbetiae_contig1265:15879..15990 | 1691682906.360172-CDS-L-elsbetiae_contig1265:15879..15990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1265 15880..15990 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1265.2137.1 >prot_L-elsbetiae_contig1265.2137.1 ID=prot_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MKSVGKATGSSMKAMVHALQPKSVGLGEILDTWKIEQIIGKPPGRVTKCA ATVEFRRDGTVATSFDGRESVSDFTFRAHAWPRACTIEVFRHLVRSQGFP GTVG* back to topmRNA from alignment at L-elsbetiae_contig1265:11981..16039- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1265.2137.1 ID=mRNA_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4059bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:11981..16039- (Laminarionema elsbetiae ELsaHSoW15) GGGTCCGCCGCCGTCCGGTAAAAACAAGGCGAGGGCCAAGGGCGGCGTGA
TGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAGGCCATGGTGCAC
GCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCTGGACACCTGGAA
GATCGAGCAGGTATATATGTATATACACGATAGGTACATGGAAATGGAAG
CATGTGTGTGAAGAGGGAGCAGGTTCATTTTTTTTTGTTTTTTTTTCCGC
CCATCACTGGCATATTTGTCGTCTGCCCCGCTGGCCCCCTTCCTCCACTA
CGACTAGCTAGACGACCCAACCGGGGTCACACAGATATATGTACGTATGT
TGTTGTTGTTGGTGTTGTTTTTTTTTTTACATTGAAAAGCACGTGTGTAC
AGCAGTAGTACGCTTTTGTCGGATGGTCGTGTGTGCGCGTGCGTACGCGG
TCCTCTTAATATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAG
AGCAAAGACTCGATATGGGGTTCAAACGGTATTCCATACAGGGACGTAAT
ATTTGGCGAAGCGAGCAGAAAAACAACCTAAACATCAGAAGAGTTCAACA
TCTCCTCTGCAAAGATTTAGATTTGCGAGGTCCCTTTTGTTCGCATCTTT
TGGTGATTACGCGGCGGCGTCGGCCTACCTACCGTGCTTATACTTGTATG
TACAACGTGCCGGGGCTTTCTGCTGGCCGGCTAAAGAGGAGGTTCGTTGT
CGCGCGCTGTGAAGGGGTTTTAGAATTGACGTGGTGCTCTCCCTCGACTG
TCCGGCCCCCCGGAGAGTGGGCGTTGCCTGTCTGCATCCGCGGGTTGGTG
TTGTCCTGGGTATAACGCGAGCTGCAGTCTACGACGAGTAGTCCCGTTAG
TGCCGGCTCTGCGCCTCCTACATACTGTGTAGAAGTACCGTAGGTGACAC
AAGATACCACACCCCCTGGACAGATTTTCACAGCTCGATTCCTCCTCAGC
AAGAAGAGTGCCAGTGCCAAAAGAGGTTGGCGTTGGAAATATCTAGTCGA
GGGCCGTCCGAAAACGTGTCATTTGGTGCTGGCACCCTCTTCGTTACGGA
GAAATGGAGCTTTAAAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTCACC
TACGGTAGGGTCTTAGTCTTGCTTGCGGCCGTCGACCGGCACCACCATCA
TAGCTTCCGCTCGTCACAGAGGCATGGACATTTTGCGACCAAATAAGCAG
CGGTTCTGTCATCATGCACCTATATACACGAAGTAGTACTCCGTCCATAA
AATATGAATTAACATGGAACATTTTTCATTTTCGGCTAGGAATGTACACG
AGTACGCCGCACACATGGATGTATATTTACTTCGTGCAAATGAGGTTTCT
GACCATGCAGCACGCGGGTTCCATGTATCTTGCCATCGTCCGGTGACCGA
CTACTCTGTCTGTCTTCGTCAGTGTACATGCGAGCGAGATGAACCCCCCC
CCCTCCACCCTCCACCCTAGTTTCAACTCTGTAGCGTCGATCCATTGATT
GGGCGGCGAGCAGCACATCCTCCCGTCCACTCCAGACCCCCCCCCCCTAA
CTCGCACGGAATCCCCCGCGGGACCAAGGGGGAAACACGCGTTTTTGTAG
ATCATATGTCCATCACATAAACATAATTTATGTGCGTGCACGCACGTCTA
TATTTCTGTACATATATATGTACCTGTGTTTCCGTAGATCATCGGCAAGC
CGCCCGGGCGGGTAACCAAGTGCGCCGCCACGGTCGAGTTTCGTCGGGAC
GGCACGGTGGCGACGTCTTTCGACGGTCGCGAGTCCGTCTCCGACTTCAC
CTTCCGGGCGCACGCGTGGCCGAGGGCCTGCACCATCGAGGTATTTAGGC
ATTTAGGTGTGTGCGTTTTGCGCTGCGGCGGGCGTGTGCGCTACATATGT
ACTCCTATAATAATAGCTGTGCAGTGTTCTTTTTACGCAAGCGCTTGTTG
TATCGTTCGACTACATAAGATACACACGTATCTATGTTTTATGTGTTTTC
TGTCTCTGTGTGTGAGTATGCATAACCACTTCAACCTTTTATGTGCCAGC
GGACAGGCGGATTTCGAGTGTCCAGCCTCACTGTGCACAAAAAAGAGCCC
ATCATGCATTGCAACCGCCTAGTCAGACCAAGTATGGAACCTCCCTGGCC
TCTTTTGGGGTTTTCACTCCTTCCTCGCCCCAGCAAATGTGCCCAGCAGC
GGATCCGGGTAAATGGCTATACCGTAGGTGATACGAGATACCACACCCCC
TGGACCGAACTTAAGAGCTCCATTACTCCGTAACCAAGAAGGTGCCAGCA
CCAAGCAACACATGTTCGGACAGCCCTCGACTAGATCGTTCCAATGCCGC
CTCTTTCGGCACTGGCACTCTTCTTGCTGAGGAGGAATCGAGCTTTGAAA
GTCTATCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATACTACATCC
GAAGTGTGTGTAGTACTTACACCGGTGGTGTAGGTAGTGTTGTGCTTCGT
AGAGAATGTGAGCTCTTTCGGTAACTATTTAGATTTTAGAGAGAGATGAG
TCAAGAGGGTTTTCGACGTTACTGGCAGGGCGTGTTGAGGATTCGGCACG
TGGTTTGCTGTTTGCTGTTTGCTGTTTGCGTCGTGCCCGGTGCGTGCTTT
CTACTGGGTGCCACGTTACCCCGCATGTGCATAGGGTGTGTCTTCGCACT
GAGAGTTGCCATATGGCGGGAAGTTCGACGTCAACTGGCGACGCGAACTC
AAAAGTAGGGATATTTTGCGTTGGGCACAAGCTATGCCATTACTACAACA
GTGTGCTGCTGTGGAGAAAGTGTCATCATAAGTCATCAAGGATGATGCGA
CTTGTTGTCTATGCTGGGCTTAAGTTTTTGGCCCCAACCTGACAGCCAAA
TGAAACATAATATTGTCTAATCTGATGAACCGAAGGATGTTTGATTTTTC
TCTCAACCCCCGCCGCCGCCCCCGTGTTTATTTTTCGTGTGTCGGTGACA
AATGAAGTTCGAAGCCAAGGCTTTCCAGGGACCGTGGGATGAAGAACCGG
TTTGGAAAGTCTACAAGGTGAACTGCTTTCTCTTCCTGCCGAACCGAACC
TGAACTTTTCCGTTTCGGCAGGCGTGGGGGGGCGCTCAGTTGCTGTTCTC
GCTTCTGCCGTTGGAACATCCACATCGAGCGCGGGCTTTTCGAGACGATT
CACCCTCCGTGCTCTTATGTATGGATGGATGTATGTATGTAGTACAAGAA
CCCCTTGGCCTTGTCTGCCTTGTCCACCATGTCGGCCATACCGATGTACG
ATCGAGGTCGTTTGTGTCCGTGTTCCGTGCGCCGCAGTTGGGATTGTTCG
CGGTGGGGTGCAGGGTACCCGTGAGTGAGCGACCCCTTTTTTCCCATCGA
ACTGCTACGTAGCAGAGGTCTGCTTGCTTGCTCTTGAATAGGGAATCGTT
TTGCTTCTCTCGACGGGCGGCGAAGGCCGCCAGCTAGATAGATAGCTCAG
CTTTATTTGTCTCTTCAAAAGGGCTCATGGTGCGTCGTTTTCACCCCGAG
CCTAGTTAAAAAAAACGACAAAAAAAAAGCAGCTCGCCTTTCCGCCGCAC
TACAACAGAGCGCCAGACATGAGGCGGCCGCTCCCAACTTTCTAATCCAT
CCATCATGAAGATTATTTTCGCGCTTCTTCTGGGATGGAACCAGTGCGTT
CGTCGTTGAGCGCTGTGGTGTTGCACCACAGGTATCCTACATTGGCTTGC
ACCACCGCTACTATTGTTTTGGTGCTATTTGTACGGCTTGGTGTACTACT
TCTGGGGAACGCACGTGTGACTCTCGATGCAGCCGCGCATTGATACCGCA
ATGCGCCCCCAGACGGGAGGAAACCCTGCCGCCCCCCCCCCCCACTTGCC
CCCCCCCGCTTGTTGGACACTTTATCAAGCCTCGGCCCTCCCTCCTCCCT
ACGCCCTCCTCTCCCGTCCCTATCCCGCACCACACAGGGGTCCTTCTCCC
GCAAGCTGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1265:11981..16039- >mRNA_L-elsbetiae_contig1265.2137.1 ID=mRNA_L-elsbetiae_contig1265.2137.1|Name=mRNA_L-elsbetiae_contig1265.2137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:11981..16039- (Laminarionema elsbetiae ELsaHSoW15) ATGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAGGCCATGGTGCA CGCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCTGGACACCTGGA AGATCGAGCAGATGAAAAGCGTCGGCAAGGCCACGGGCTCGTCCATGAAG GCCATGGTGCACGCGCTGCAGCCCAAGTCGGTCGGCCTCGGGGAGATCCT GGACACCTGGAAGATCGAGCAGATCATCGGCAAGCCGCCCGGGCGGGTAA CCAAGTGCGCCGCCACGGTCGAGTTTCGTCGGGACGGCACGGTGGCGACG TCTTTCGACGGTCGCGAGTCCGTCTCCGACTTCACCTTCCGGGCGCACGC GTGGCCGAGGGCCTGCACCATCGAGGTATTTAGGCATTTAGATCATCGGC AAGCCGCCCGGGCGGGTAACCAAGTGCGCCGCCACGGTCGAGTTTCGTCG GGACGGCACGGTGGCGACGTCTTTCGACGGTCGCGAGTCCGTCTCCGACT TCACCTTCCGGGCGCACGCGTGGCCGAGGGCCTGCACCATCGAGGTATTT AGGCATTTAGTTCGAAGCCAAGGCTTTCCAGGGACCGTGGGATGATTCGA AGCCAAGGCTTTCCAGGGACCGTGGGATGA back to top
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