mRNA_L-elsbetiae_contig1265.2136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1265.2136.1
Unique NamemRNA_L-elsbetiae_contig1265.2136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1265.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1265contigL-elsbetiae_contig1265:9707..10654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size949
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.2580426-UTR-L-elsbetiae_contig1265:9706..101621622815455.2580426-UTR-L-elsbetiae_contig1265:9706..10162Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 9707..10162 +
1691682906.2866282-UTR-L-elsbetiae_contig1265:9706..101621691682906.2866282-UTR-L-elsbetiae_contig1265:9706..10162Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1265 9707..10162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.3433611-CDS-L-elsbetiae_contig1265:10162..106541622815455.3433611-CDS-L-elsbetiae_contig1265:10162..10654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 10163..10654 +
1691682906.2951355-CDS-L-elsbetiae_contig1265:10162..106541691682906.2951355-CDS-L-elsbetiae_contig1265:10162..10654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1265 10163..10654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1265.2136.1prot_L-elsbetiae_contig1265.2136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1265 10163..10654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1265.2136.1

>prot_L-elsbetiae_contig1265.2136.1 ID=prot_L-elsbetiae_contig1265.2136.1|Name=mRNA_L-elsbetiae_contig1265.2136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MFTLLYVFVFVSLLLLASLFFHCTASLLLLYSSCVCRRLYVPVRWDCCRQ
RNTAICVLRSIIESTVFNRPGIREMLGREPCARRLYSLSLLLLSRTLCFV
SGDARRCSSGDRHLRPFDMVSTGLHVMFLFRGRICVSCVLRGICRVCSWG
VKLLLKNKRAWPGC
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mRNA from alignment at L-elsbetiae_contig1265:9707..10654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1265.2136.1 ID=mRNA_L-elsbetiae_contig1265.2136.1|Name=mRNA_L-elsbetiae_contig1265.2136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:9707..10654+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTGAGTCGGTTCTAGAGAGGTGTGCTAACCTTCAGCGGGGCTTTACTC
TGTGAGACACCGCCGTCTGCCACTACGACTCTGGCAGAGGCAGGCGCGCC
GCCTTCTTGCCTGTGCCGGAGGAGGTTGGAAGACGTTTCTGTTGCTGTTG
TTGTGCGGGTCGCCATATGACCGTGATGGCCGCAAGCGGGTTAGGCACGC
GACGGATTCACCGTTTTAGTAGTGACAATTCTTCGGCCCACCAACTCTCC
TTGTGTGGCACTCTGGTTGTAACTGAAGGCTTGTGGGTATTATTCCGCCA
CAGCAAGACAGTTACAGACTCGGGTTTGCACGTGAAGAAGTTTGGGCGTG
ACACCCTTGCGGAGGGAGCGCGTGTGTGCGCGGTAAAGGGCGGTGGCACT
CGAATGATCAAATTCGAGGTCGAAGGGTCGGAAGGGTGTGTGGCAGGCCA
TATTATATGTTTACGTTATTGTATGTTTTCGTTTTTGTTAGTCTTTTACT
TCTCGCTTCTCTTTTTTTCCATTGCACTGCTTCTCTTTTACTTTTGTACT
CTTCCTGCGTTTGTCGGCGGTTATATGTGCCGGTGCGGTGGGACTGCTGT
CGCCAGCGTAACACAGCAATCTGTGTGCTGCGTTCGATAATCGAATCGAC
TGTGTTTAATAGGCCAGGAATCAGGGAAATGCTGGGTCGTGAACCGTGCG
CTCGCCGCCTTTATAGTTTATCTTTGCTCCTTTTGTCGCGCACTCTGTGT
TTCGTCTCCGGGGATGCAAGGCGGTGTAGTAGTGGAGACAGGCATCTCAG
GCCTTTCGATATGGTTTCGACAGGGCTCCATGTGATGTTTTTGTTTCGAG
GTAGGATATGTGTATCTTGTGTCCTACGGGGGATATGCAGGGTTTGCTCA
TGGGGTGTGAAGTTGCTCCTTAAGAACAAGAGGGCTTGGCCGGGATGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1265:9707..10654+

>mRNA_L-elsbetiae_contig1265.2136.1 ID=mRNA_L-elsbetiae_contig1265.2136.1|Name=mRNA_L-elsbetiae_contig1265.2136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:9707..10654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTACGTTATTGTATGTTTTCGTTTTTGTTAGTCTTTTACTTCTCGC
TTCTCTTTTTTTCCATTGCACTGCTTCTCTTTTACTTTTGTACTCTTCCT
GCGTTTGTCGGCGGTTATATGTGCCGGTGCGGTGGGACTGCTGTCGCCAG
CGTAACACAGCAATCTGTGTGCTGCGTTCGATAATCGAATCGACTGTGTT
TAATAGGCCAGGAATCAGGGAAATGCTGGGTCGTGAACCGTGCGCTCGCC
GCCTTTATAGTTTATCTTTGCTCCTTTTGTCGCGCACTCTGTGTTTCGTC
TCCGGGGATGCAAGGCGGTGTAGTAGTGGAGACAGGCATCTCAGGCCTTT
CGATATGGTTTCGACAGGGCTCCATGTGATGTTTTTGTTTCGAGGTAGGA
TATGTGTATCTTGTGTCCTACGGGGGATATGCAGGGTTTGCTCATGGGGT
GTGAAGTTGCTCCTTAAGAACAAGAGGGCTTGGCCGGGATGCATGTTTAC
GTTATTGTATGTTTTCGTTTTTGTTAGTCTTTTACTTCTCGCTTCTCTTT
TTTTCCATTGCACTGCTTCTCTTTTACTTTTGTACTCTTCCTGCGTTTGT
CGGCGGTTATATGTGCCGGTGCGGTGGGACTGCTGTCGCCAGCGTAACAC
AGCAATCTGTGTGCTGCGTTCGATAATCGAATCGACTGTGTTTAATAGGC
CAGGAATCAGGGAAATGCTGGGTCGTGAACCGTGCGCTCGCCGCCTTTAT
AGTTTATCTTTGCTCCTTTTGTCGCGCACTCTGTGTTTCGTCTCCGGGGA
TGCAAGGCGGTGTAGTAGTGGAGACAGGCATCTCAGGCCTTTCGATATGG
TTTCGACAGGGCTCCATGTGATGTTTTTGTTTCGAGGTAGGATATGTGTA
TCTTGTGTCCTACGGGGGATATGCAGGGTTTGCTCATGGGGTGTGAAGTT
GCTCCTTAAGAACAAGAGGGCTTGGCCGGGATGC
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