mRNA_L-elsbetiae_contig12648.2134.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12648.2134.1
Unique NamemRNA_L-elsbetiae_contig12648.2134.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12648.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12648contigL-elsbetiae_contig12648:2203..4794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size340
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815455.073755-CDS-L-elsbetiae_contig12648:2202..24181622815455.073755-CDS-L-elsbetiae_contig12648:2202..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12648 2203..2418 -
1691682906.1535296-CDS-L-elsbetiae_contig12648:2202..24181691682906.1535296-CDS-L-elsbetiae_contig12648:2202..2418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12648 2203..2418 -
1622815455.0853705-CDS-L-elsbetiae_contig12648:4671..47941622815455.0853705-CDS-L-elsbetiae_contig12648:4671..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12648 4672..4794 -
1691682906.1709535-CDS-L-elsbetiae_contig12648:4671..47941691682906.1709535-CDS-L-elsbetiae_contig12648:4671..4794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12648 4672..4794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12648.2134.1prot_L-elsbetiae_contig12648.2134.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12648 2203..4794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12648.2134.1

>prot_L-elsbetiae_contig12648.2134.1 ID=prot_L-elsbetiae_contig12648.2134.1|Name=mRNA_L-elsbetiae_contig12648.2134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MCLLCRIQAEDEATHDRLSWKDIFIRVVAVVLLTLLVDWLTADSIRAQRE
KLKEQITQVLDVFSMMVDEMMRTARRTETQAESAAVARAERAEELYAQLT
QDDMARLAMQADA
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mRNA from alignment at L-elsbetiae_contig12648:2203..4794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12648.2134.1 ID=mRNA_L-elsbetiae_contig12648.2134.1|Name=mRNA_L-elsbetiae_contig12648.2134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2592bp|location=Sequence derived from alignment at L-elsbetiae_contig12648:2203..4794- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTTGCTTTGTCGCATTCAGGCAGAGGACGAGGCCACCCACGATCG
TTTGTCGTGGAAGGATATCTTCATCCGCGTGGTTGCTGTGGTGCTCCTCA
CGCTTCTTGTGGATTGGCTGACGGTGAGTGCTATGAGCGTGTTGATATAC
GGGTGGGGTGACAACGATTTTTGGAATTGGGCAAATTTGTACCCAAACAA
GCACACATTAAGCTCACAGCCGATCTACCGGACCAGTAGGGAAGCGTCGC
GCAAGAAGAAAGCTGTTAGTTCGCTCACCTAGCGGGTAGCGGGGGCTGTT
TTTTGCATACACATCACACAGTCTACCTCCAACCGCGAACTTTAGAATCA
ACTTAAAAAATCCCGCACTCTAAAACCAAGACAGAACATGCCATTTTGCG
GTCGTTCAAAATCAGGTTCGGGATAAGAGATTCTTCGTACGACACAGCTC
TGTGTGTAGAGGACACCATGGAGAAGGGTGTGATGCGTGCTGGCATGTGA
AGATCTACTGCTGGGGTGGAGTTATGGAGTACTGCAGCAGTAGCTCCACA
GAACTCCGCAATCGCCCGACGACTGCAAACATCCACTGCTGGGTTCACCG
CCCCAGACCCCAACCTCCTGAATTGCGGGTCCACAGCAGTAGCTCATACC
ACTAGCTACTGCTGGGAACCCGTGGTTGTCGAGGTTGGGATCTGCGGTGG
CGAGCACCGCAGTGGATGTCTGCTGTCGTTGGCCCAGATTGCGGAGTTCT
GCAGGACTGCTGCGGTGCTCGAAAAATCCGCCTCAGAAGCAGATCTGCAC
ATGCCGCACGCATCACACCCTTCTCCGTGGTGTCCTCTACACACAGAGCT
GTGCCGTACGAAGAATACCTGATCCTAAACCTTTTCAGAAGCTAAGCGGT
TTAACTTGGTTTTTGAATAGGCAGAGGGGGCCCGGATTGTTTTTGTCTTG
GAGCTTGTGAGGGCATGTTTCCCAGCGTTGTCACCCCCCCCTTAACCATT
ACCATTACGACGGAAAAGCGTAATATTGTTGCACAGTATGTCTAGAGCGC
AAAGGGGAGAGGGGTGACTGTGGTCGGAGGTGGCAGAGAAATATGTAGGA
ACATGGTGCTGCAGTGGCGATAAACGTTGGAAATGGGGAGGCATCAGAGC
CGGTTTCAATGCAGGAATCAGAATCGGAAATCGAAATCAGAATTGACTTT
AAGTCCCCAAAAACCAGGGAACATCTGCTGTGATTGGGGGAATTCCATAC
TGCCCGGACTATTGGAAGATATTGGCAGTGAATCTTCCATACTTAAACCT
GATTCCGATAAATGGTCAAACCAATTATTTGAAATCGGATTTGGTGAACC
GCAACCCAAGATAGAACACCTTCCGCAATTTGCTGGGCTGCCGAGGTTTT
AAAGGGACGTGTGCTTTTGTCCCTGGTGTGTGTGGGCGCCTGTGGCTACT
GCCGTTGACATCTCTAGACGAAGGCAGGCACAGAAATTGAAGAAGCAAAG
CTTGCCAACGCAAAAGCCTAGAGGTGTAGACTCGTTCTGTGTCTGTAGAT
ATCTCATCTGGAGGGGGAGTTTACTTTCCAACCCGGCAGAGGGTCATCAC
TGCTGTTGTAGCCCTATCAGGGAATGCGGCTTGGACGCTCATTTTCAAAG
GTTATATTACTGCGTAGTTTCTGTCTTGAAAGTCTTTGTGCCGGCCGAGC
TTGGTGGTAACTCTCGCCCGGCATCTTCCATCGGCTCGACGGCGCTTTTT
TGGCAGTTGCCGGTGCGGTCCGCATATAAAAGTTCACGATTGTTTTACCG
TAGGGGTACAAGCTCCCAGGAAAGCGACGCCTGGGCCCTCACAGGCGTCA
CGCTCGCACAACACTGAGTATGTTGGAGAGCGCATGCATAGAGGATGTGA
GTACAAAAAACTAGAGTTCTCGGTGTTTCTTACGCGATACGCATTCGAAG
TTTTGTGGGGCTAACATCTCAACGGCAGTTACAGTTTACAACTCGCGCTT
CAGCGCATCCCTCGGACTGCGGTTTGGACCATGAACATCCTTGACTCTCA
GGGATGGTTGAAGTTTCTGGTTTACGCAACGATTCACGTTGCATCTGTCT
CATTTGTCTTCCAATCCAAACTGGTTGTTTCTCCGCGATTTCAAGTTTTG
TTTTCGATTTTGATTTTGCGACGTACCGATAAGACACATCCGGTCCAGCC
GACTCGAATGCTTGGTTCTTTTGGGACTTAATGTCAATTCTGGTTTTGAT
GTTCGATTTTGATTCCTGCGTTAAGACTGGCTCTCAGAGAGGACGGCAGA
TGATACTTAAAACCAACTTTTTCTCGTGCTTTATCGGTGCATTTGCTGGC
GCGCAAACAACAACCACGGGAACCAGGCGGATTCGATACGGGCCCAGAGG
GAGAAACTCAAGGAGCAGATCACACAGGTGCTGGATGTTTTTTCCATGAT
GGTGGATGAAATGATGAGGACTGCGAGGAGGACCGAGACCCAGGCGGAGT
CAGCGGCGGTGGCGCGTGCGGAAAGGGCAGAGGAGCTCTACGCTCAGCTT
ACCCAGGATGACATGGCAAGGCTCGCGATGCAGGCAGACGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12648:2203..4794-

>mRNA_L-elsbetiae_contig12648.2134.1 ID=mRNA_L-elsbetiae_contig12648.2134.1|Name=mRNA_L-elsbetiae_contig12648.2134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig12648:2203..4794- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTTGCTTTGTCGCATTCAGGCAGAGGACGAGGCCACCCACGATCG
TTTGTCGTGGAAGGATATCTTCATCCGCGTGGTTGCTGTGGTGCTCCTCA
CGCTTCTTGTGGATTGGCTGACGATGTGCTTGCTTTGTCGCATTCAGGCA
GAGGACGAGGCCACCCACGATCGTTTGTCGTGGAAGGATATCTTCATCCG
CGTGGTTGCTGTGGTGCTCCTCACGCTTCTTGTGGATTGGCTGACGGCGG
ATTCGATACGGGCCCAGAGGGAGAAACTCAAGGAGCAGATCACACAGGTG
CTGGATGTTTTTTCCATGATGGTGGATGAAATGATGAGGACTGCGAGGAG
GACCGAGACCCAGGCGGAGTCAGCGGCGGTGGCGCGTGCGGAAAGGGCAG
AGGAGCTCTACGCTCAGCTTACCCAGGATGACATGGCAAGGCTCGCGATG
CAGGCAGACGCAGCGGATTCGATACGGGCCCAGAGGGAGAAACTCAAGGA
GCAGATCACACAGGTGCTGGATGTTTTTTCCATGATGGTGGATGAAATGA
TGAGGACTGCGAGGAGGACCGAGACCCAGGCGGAGTCAGCGGCGGTGGCG
CGTGCGGAAAGGGCAGAGGAGCTCTACGCTCAGCTTACCCAGGATGACAT
GGCAAGGCTCGCGATGCAGGCAGACGCA
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