mRNA_L-elsbetiae_contig12633.2130.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12633.2130.1
Unique NamemRNA_L-elsbetiae_contig12633.2130.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12633.2130.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.600e-29
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:    2 VRAITKAKAALISAVEKGRDSVRVTCRSDRLELSASAQRGGDSVGHAAEMDRRALMHDVLVLRDVLAQTQPDEAMRLTKDL 244
            VRAITKAKAALI+AVE G DSVRVTCRSDRL+++ASAQRG  SVG AAEMDRRALM DV  LRD+LA+TQP+EA RLT  L
Sbjct:  358 VRAITKAKAALITAVEDGGDSVRVTCRSDRLQVAASAQRGSGSVGQAAEMDRRALMQDVATLRDILAKTQPEEARRLTDGL 438
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BLAST of mRNA_L-elsbetiae_contig12633.2130.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.080e-29
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 2 
Query:    2 VRAITKAKAALISAVEKGRDSVRVTCRSDRLELSASAQRGGDSVGHAAEMDRRALMHDVLVLRDVLAQTQPDEAMRLTKDLV 247
            VRAITKAKAALI+A+E G DSVRVTCRSDRL+++ASAQRG  SVG AAEMDRRAL+ DV  LRD+LA+TQP+EA RLT  LV
Sbjct:  357 VRAITKAKAALIAAIEDGGDSVRVTCRSDRLQVAASAQRGSGSVGQAAEMDRRALIQDVATLRDILAKTQPEEARRLTDGLV 438
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12633.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN94_ECTSI6.600e-2977.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE9.080e-2975.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12633contigL-elsbetiae_contig12633:888..5106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12633.2130.1prot_L-elsbetiae_contig12633.2130.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12633 4505..5031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815454.6941888-UTR-L-elsbetiae_contig12633:887..9631622815454.6941888-UTR-L-elsbetiae_contig12633:887..963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 888..963 -
1691682905.8774273-UTR-L-elsbetiae_contig12633:887..9631691682905.8774273-UTR-L-elsbetiae_contig12633:887..963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 888..963 -
1622815454.7042572-UTR-L-elsbetiae_contig12633:4495..45041622815454.7042572-UTR-L-elsbetiae_contig12633:4495..4504Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 4496..4504 -
1691682905.8917055-UTR-L-elsbetiae_contig12633:4495..45041691682905.8917055-UTR-L-elsbetiae_contig12633:4495..4504Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 4496..4504 -
1622815454.7365842-UTR-L-elsbetiae_contig12633:5031..51061622815454.7365842-UTR-L-elsbetiae_contig12633:5031..5106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 5032..5106 -
1691682905.9278157-UTR-L-elsbetiae_contig12633:5031..51061691682905.9278157-UTR-L-elsbetiae_contig12633:5031..5106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12633 5032..5106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815454.7157223-CDS-L-elsbetiae_contig12633:4504..46931622815454.7157223-CDS-L-elsbetiae_contig12633:4504..4693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12633 4505..4693 -
1691682905.9048548-CDS-L-elsbetiae_contig12633:4504..46931691682905.9048548-CDS-L-elsbetiae_contig12633:4504..4693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12633 4505..4693 -
1622815454.726112-CDS-L-elsbetiae_contig12633:5022..50311622815454.726112-CDS-L-elsbetiae_contig12633:5022..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12633 5023..5031 -
1691682905.9153285-CDS-L-elsbetiae_contig12633:5022..50311691682905.9153285-CDS-L-elsbetiae_contig12633:5022..5031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12633 5023..5031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12633.2130.1

>prot_L-elsbetiae_contig12633.2130.1 ID=prot_L-elsbetiae_contig12633.2130.1|Name=mRNA_L-elsbetiae_contig12633.2130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MPQRSAGAVRLGTAGGRLCRTRGGNGQAGPDARRPRPARRAGANAARRGD
EAHEGPGHVAPRYTY*
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mRNA from alignment at L-elsbetiae_contig12633:888..5106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12633.2130.1 ID=mRNA_L-elsbetiae_contig12633.2130.1|Name=mRNA_L-elsbetiae_contig12633.2130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4219bp|location=Sequence derived from alignment at L-elsbetiae_contig12633:888..5106- (Laminarionema elsbetiae ELsaHSoW15)
GGTTCGGGCCATCACGAAGGCAAAGGCGGCGTTGATTTCGGCGGTGGAAA
AAGGAAGGGATAGCGTGCGAGTCACATGCCGCAGGTGAGTGCAGTGCGGA
ATATTACCGATAAGCGGCGGCGCGGCGTATGCACCTGGCGGATTACCTGC
CGCAAACAAACCTCGCGTCAGACCTGCCCCCGTCCTTCGAGCAGTATATT
TTTGTCTGCACCCAATGGAAAGGCGGGGTGCGACGAGTCGATTCCCAAAT
CATGTCGTTCGCATACATGCATATCTATCTATGTATCTACATAGAAGGTG
CATTTCTACGATCTATTTGAACTTGGCCGAGACAGTAGTAACCGTTCGGC
CCTCATCTATGCACGGCGGCTTTTACTCGTACGATGTACCTACCGACAAC
GCTCCGTGGTCAGCGATCGGCTGGAGCTGTCCGCCTCGGCACAGCGGGGG
GGCGACTCTGTAGGACACGCGGCGGAAATGGACAGGCGGGCCCTGATGCA
CGACGTCCTCGTCCTGCGAGACGTGCTGGCGCAAACGCAGCCAGACGAGG
CGATGAGGCTCACGAAGGACCTGGTCATGTAGCGCCGAGATATACGTACT
AACTGAACTAGGTGACAAAAGATACCACACCCCCTGGGACAGATTTTCAA
AGCTCGATTCCTCCCCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGGGAGG
GGGGGGGGGCGTTGGAAAGATCTCTGTAGGTAGTCGAGGGCTCTCCGAAA
ATATGTGGTTTGGTGCTGGTACCCTCTTCGTTACGGAGTAATGAAGGAGC
TCTAAAATTCGGTCCCAGCGGTATGTATCTATCTTGTGTGTCACACACGG
CGGTATCTCATGGCGTGGTGTTGGTGCGTCCTGTTTGGGCCCGTGCGGAC
TGGATGACCATGGCCGTGTACACGACACGAATCGGTTATGAGCGATTGTG
CTTGCGCTGCAGACCAAAACACCGAAGATGCAGCGGTACAGACAGCCAAA
GAGTAGAATGGGTGCGGTGGGTGCCGGCCCATATGGCATGTACGTTTTTT
TTTGTTCTGTTTTCTTCCCAAAATTGGCGCATTCTCGTCTGCCCCACTGC
CCCCCCCTACATACGCACCTACCAATATACACGCGATTCTGACGCCTAAC
AAAAACCTCCCGATATGGCACCTACTTGACTCCCAATGATGTGGCACTTT
CGAGGGACAGTTAACATAGATGGCACTGGCACTGACTGGGTGTGGTCGGA
GTGTCGCTCAATCCCAGTGCTATCGTCCCGTCCGTGCGTTCAGGGACACA
TGCCACCCATTGGACTCCGAATAAATGACGACAGCCTTCTTTCTTTTTTT
TGTTCTGGGCCTCGTTTTGCAAGAAGGGCCGGTCTGGTGCTGTCTACATA
TACAACCAACGAAGAAGGAACGCGGGAAACCGATCTTTGAACGGGTTTTT
CGTCGCCCCGATAGATTTTCAATCGGGCGCAATCTCAGGAAAATATCGGT
GTGTGATATTCAGCAGGACCCACAAAAATAGACAACTCCAAACTTTGTGA
TCTTCGTGGCCGTGAAAAGAAGCGGTACCACAGTAGATCAGGACAAAAAA
CAATGTTCTATGTTTTCAAGTCGAAACAAAAAAGCGTTTTTGTTTTCGAT
CGCGATACAGCCAAAGTTCGAAGCAAACATTCATCAAGCACGAACCACGC
CGTGAGGGCGTGGTCTTTGCATAAAAACACAATTTGAGAGCAAGCCAAAA
AAACACGTAAATTTACGGCGAAGTGTCTACTTTCAAGACGAACGGCCCCG
GGGAACAAACACACCATTCCAAGGAAGATACGGCAAGATGGACCTGCCCG
TAATCAGGAACAACATCACATATCGTTGAAATTGCAGCCAGTAAAATGAC
CGTATCGACGGAGCAGCGCGTTCTTCATGCGGGCTCTCTCTCTCTCCCGA
TCAAAAATAGAAAAAGCTGCCGACCACAATGAAAACAAGTCAGGGCTAAG
TAAAAGGATGGCAAGGAATCTGCCGATCCGATACCTGCCGTAACGAATAG
CGTAGTCGATCTTATAAAACGGTTCGCTCCGCTTCTTGTCCGCCCCGGCC
TTGACTGCAATCTCCCGAGAGGGTTTCCACTATTGTTTGACGAGTGGACG
GGGGGGGACCGCAAACGGGAAAACAACAGCAAGACACTGGTACAACACAT
AAAACATCTGAAAACAAAAACAAAAAACAAAAAAAGTACATATACAGATA
CGTAGACTAACACTACCTAAATTTACTCGAACCCTAGTCCGGGTATGGGA
AAAATAAGCAGGTTGACTACGCACTTGGATGGATGCACAGGGACAGAACA
AACAGCACAGCAAGAAAACAAACAAAAAACAGCTCGTGCTGGGAGCTAAA
TTAGAGCTCGTGCGGGTTGATGAAGCCGTCCCCGTCGCGGTCGCGGTCCT
TCCCAACCTCGTCTCGCGTGACGAAGCCGTTGTTATCCTTGTCTAGGGCG
GCGAAGCGGTCGTGGATTTCCGCGATGTCCTCTTGCGTCACCTTTTCCTG
CTCAAACGAAAGGGGTCTCGATGGCGTCAGCGGTGCGGGGCATGGACGCA
CACACAGACACACACACAGACACACACAGACACACACACAGACACACAGA
CACACAGACACAGACATACATACACATATACATACACATGCAAACGAATA
AAATAAAACAAAACTCACAACAGAGGCAGTGATTCCGCGATTTTGCGATT
TGCTATTTTGTGAATATTTTTTGTATAGGTAGTCACTTGTGGTTTCGGTT
TCCATATCTACGATGATGATGATGAAAGAAGATAACAATAGAGATGGACA
ACACAAAAACGAAAACGCTCGTCGGGCTCGTCGACTGGAGCAGCTCAGGG
TCGCCCGTCGTCCGTATCATTCACGGATTGGGGGGGGGGGGGGGGGGCGG
GCAGGCCTTGGGATGACGCCGGGAAAAGTTCGGGTGGACAACCTACGGTC
TGTCCAGACGAGCCGACAAAACAGACGGCCAAGCAGCAAGCGACCACGAC
AAGGACACGCTTCCGCCCAACACGCGAGACCTAAAACCTCGTTTCTCAAA
ATCTGTCTTGACAACAGTAGTTTTGTACCACCGTATGTATGTATTTAGTG
TATTTTAGAAGATAAAACAACGCGCGATGATGCCGGGGCGAGGACAGCAA
CCAATGGGAGTCTACGCCTCTCACCCGCCCGGTTTGAGAGTTTTTGTGGT
TTTGTCACATGTAGACGATGTATGTAGGTGTCACAGATTAACCTACGAGT
ACATTACCTTCAGGTTTAGCAAAAAAGTGCCGGAGCCATCTGAAGATCCG
AAAACGCACCCAAACGCACGCACGCACACACAACACAGCAGGAGAGAAAA
CCAAGGGCACACACATATCTACACAGCACACGACGCAGAGGATACACCTG
ATATCCTACGAAAGGCTGCGGTGTGCGTCCGAAACTGAACTCAACTTACT
ACAGAGTCGCCGTCTCCCTGCACATACATTGCATACATACATACCGTAGT
CACGCGAGCCGGCCATCCATCGCACAGGGGTGCAGCAGATTTTCCCGAGC
CGATATCTCGACGACGGAGAGGGTGCCAATGTCGAAGAGCACGCTAACAG
GGGAAAATCTTCAAATCTTGCCGATGCTTTTCATAAGACGGTCTCTTGGA
CATCGGCACCCCCCTCCAAGCGTCGAGATAATTGGCTCGGGAACATCTAC
CACACCCCTGTGCGCGATGAACTCGCGCACACGATTACGGTACAATACGT
ACCGTAGGTGACGCAAGATACCACACCCCCTGGGCCGAATTTTAGAGCTC
CATTACTCCGTAACCAAGACGGCGCCAGCACCAAACGACAGATTTTCGAA
CAGCTCTCGACTAGATCTTTCCAACGCCACCCCTTCCGGCACTGGCACCC
TCTTCGTTACGGAGTAATGCAGATCTAAATTTCGGTCCGGGGGGTGTGGT
ATCTTGTGTCACCTACGGTACAGCATCACACACACACACACCTGTCGGAT
GAGCGTGCGGCACATGAACTCCAGGGGACTAACCCGGCCGTCCTTGTCCT
CGTCCATTGTCTCGTACTCCGCGGCCGTCACCGTGGCCAGCAGGATGCGG
GTCTGCCTCCGCTTCGTGCGCTGGCTTGCCTTCATCTGCACGCAGCAAGC
AAGCACACCGTAAAGAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12633:888..5106-

>mRNA_L-elsbetiae_contig12633.2130.1 ID=mRNA_L-elsbetiae_contig12633.2130.1|Name=mRNA_L-elsbetiae_contig12633.2130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig12633:888..5106- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCAGATGCCGCAGCGATCGGCTGGAGCTGTCCGCCTCGGCACAGC
GGGGGGGCGACTCTGTAGGACACGCGGCGGAAATGGACAGGCGGGCCCTG
ATGCACGACGTCCTCGTCCTGCGAGACGTGCTGGCGCAAACGCAGCCAGA
CGAGGCGATGAGGCTCACGAAGGACCTGGTCATGTAGCGCCGAGATATAC
GTACTAACGATCGGCTGGAGCTGTCCGCCTCGGCACAGCGGGGGGGCGAC
TCTGTAGGACACGCGGCGGAAATGGACAGGCGGGCCCTGATGCACGACGT
CCTCGTCCTGCGAGACGTGCTGGCGCAAACGCAGCCAGACGAGGCGATGA
GGCTCACGAAGGACCTGGTCATGTAGCGCCGAGATATACGTACTAA
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