mRNA_L-elsbetiae_contig1263.2128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI) HSP 1 Score: 199 bits (507), Expect = 4.660e-64 Identity = 103/119 (86.55%), Postives = 108/119 (90.76%), Query Frame = 1 Query: 1 MVRGDGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGD--CGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 351 MVRGDGR+TYTRRHAYHT SNKAK VKTPGGKLVAHY KKSAKG C D C ++LPGIKH+RPKEYKNLKKR+KTVSRAYGGS CA CVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA Sbjct: 19 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGVHCADASCSVALPGIKHMRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 137
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK) HSP 1 Score: 181 bits (458), Expect = 7.420e-57 Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 1 Query: 13 DGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 351 D RV YTRRH Y T SNK K+ KTPGG+LVAHYHKK A GP+C DCG L GIKHLRPK+YKNLKKREKTVSRAYGGS CAGCVRQR+VRAFLIEEQKIVKK+++EK KK KA Sbjct: 4 DIRVQYTRRHCYATKSNKVKITKTPGGRLVAHYHKKKAAGPKCSDCGTVLAGIKHLRPKQYKNLKKREKTVSRAYGGSACAGCVRQRIVRAFLIEEQKIVKKMIMEKMKKAKA 116
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA) HSP 1 Score: 178 bits (452), Expect = 5.720e-56 Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = 1 Query: 10 GDGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQK 339 GD RVTYTRRHAY T SNK KVV+TPGGK VAHY KK A GP+CGDC I+LPGI LRPKEYKNLK+REKTVSRAYGGSRCA CVRQRVVRAFLIEEQKIVKK+L EK K Sbjct: 3 GDKRVTYTRRHAYATASNKIKVVRTPGGKHVAHYRKKKANGPKCGDCKIALPGIACLRPKEYKNLKRREKTVSRAYGGSRCAACVRQRVVRAFLIEEQKIVKKLLAEKIK 112
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.370e-52 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 1 Query: 13 DGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKK 348 D RV Y RRH+Y T SNK K+VKTPGG+LVAHYH K AKGP+C +CGISLPGIKH+RP +YKN+KKREKTV+RAYGGS C CV+ R+VRAFLIEEQKIVKK++ EK KKKK Sbjct: 4 DIRVQYRRRHSYATKSNKIKIVKTPGGRLVAHYHTKKAKGPKCAECGISLPGIKHVRPIKYKNMKKREKTVTRAYGGSECGKCVKDRIVRAFLIEEQKIVKKMVAEKLKKKK 115
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: A0A485KJ51_9STRA (Aste57867_7967 protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KJ51_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.990e-50 Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 19 RVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 351 R+TY RRH+Y T SN+ VKTPGGKLVAHY KK++ GP+CGDC SL GIKHL K YKN+ K EKTVSRAYGGSRCAGCVRQR+VRAFLIEEQKIVKKVLLEK KKK Sbjct: 6 RITYRRRHSYATKSNRIVPVKTPGGKLVAHYRKKTSHGPKCGDCKQSLKGIKHLATKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKKKT 116
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: K3WQZ0_GLOUD (Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WQZ0_GLOUD) HSP 1 Score: 163 bits (412), Expect = 7.120e-50 Identity = 84/111 (75.68%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 19 RVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 351 RVTY RRH+Y T SN K VKTPGG LVA Y KK GP+CGDC SL GIKHL PKEYKN+ K ++TVSRAYGGSRCA CVRQR+VRAFLIEEQKIVKKVLLEK KKK A Sbjct: 6 RVTYRRRHSYATKSNGIKAVKTPGGVLVAQYRKKRCAGPKCGDCKQSLKGIKHLSPKEYKNVSKTQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKMKKKSA 116
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: K8YVG6_NANGC (Large subunit ribosomal protein L34e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVG6_NANGC) HSP 1 Score: 160 bits (405), Expect = 7.800e-49 Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 13 DGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKK 345 D RVTY RRHAY T SN +VKTPGG+L H KK +GP CGDC I+LPGIKHL+ KEYKNL KRE+TVSRAYGGSRCA CVR R+VRAFLIEEQKIVK+VL EK+ KK Sbjct: 4 DTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: F0YE62_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE62_AURAN) HSP 1 Score: 160 bits (405), Expect = 8.300e-49 Identity = 80/110 (72.73%), Postives = 90/110 (81.82%), Query Frame = 1 Query: 13 DGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKK 342 D RVT+ RRHAY+T SN K VKTPGG+LV HY K +GP+CGDC SLPGIKHL YKN KRE+TVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVK++++EK KK Sbjct: 3 DTRVTFKRRHAYNTKSNVLKAVKTPGGRLVGHYASKKRQGPKCGDCKCSLPGIKHLSSFSYKNTHKRERTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKQMMMEKSKK 112
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: M4B9E9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9E9_HYAAE) HSP 1 Score: 162 bits (409), Expect = 8.620e-49 Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 19 RVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 351 R+TY RRH+Y T SN K VKTPGGKLVA Y +K A GP+CGDC SL GIKHL+PKEYKN+ K +TVSRAYGGSRCA CVRQR+VRAFLIEEQKIVKKVLLEK KK K+ Sbjct: 51 RITYRRRHSYATKSNAIKPVKTPGGKLVAQYREKRAAGPKCGDCKQSLKGIKHLKPKEYKNVSKTHRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLLEKLKKNKS 161
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Match: A0A7S2TCS5_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TCS5_PROMC) HSP 1 Score: 160 bits (404), Expect = 1.180e-48 Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1 Query: 19 RVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCGISLPGIKHLRPKEYKNLKKREKTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKKVLLEKQKKKK 348 R+TY RRH+Y T SNK + VKTPGG+L A Y KK A GP+CGDC + LPGI LRPK+YKNL KREK+VSRAYGG+RCAGCVR+R+VRAFLIEEQK+VK++L +K KK K Sbjct: 6 RITYKRRHSYATKSNKIRAVKTPGGRLTAQYIKKKAAGPKCGDCAVRLPGIPALRPKQYKNLHKREKSVSRAYGGNRCAGCVRERIVRAFLIEEQKVVKRLLAQKAKKSK 115 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1263.2128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1263.2128.1 >prot_L-elsbetiae_contig1263.2128.1 ID=prot_L-elsbetiae_contig1263.2128.1|Name=mRNA_L-elsbetiae_contig1263.2128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp MVRGDGRVTYTRRHAYHTLSNKAKVVKTPGGKLVAHYHKKSAKGPRCGDCback to top mRNA from alignment at L-elsbetiae_contig1263:18573..20508+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1263.2128.1 ID=mRNA_L-elsbetiae_contig1263.2128.1|Name=mRNA_L-elsbetiae_contig1263.2128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1936bp|location=Sequence derived from alignment at L-elsbetiae_contig1263:18573..20508+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1263:18573..20508+ >mRNA_L-elsbetiae_contig1263.2128.1 ID=mRNA_L-elsbetiae_contig1263.2128.1|Name=mRNA_L-elsbetiae_contig1263.2128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1263:18573..20508+ (Laminarionema elsbetiae ELsaHSoW15)back to top |