mRNA_L-elsbetiae_contig12628.2124.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12628.2124.1
Unique NamemRNA_L-elsbetiae_contig12628.2124.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12628.2124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12628contigL-elsbetiae_contig12628:1237..1754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size519
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815454.1820462-CDS-L-elsbetiae_contig12628:1236..15421622815454.1820462-CDS-L-elsbetiae_contig12628:1236..1542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12628 1237..1542 +
1691682905.6425374-CDS-L-elsbetiae_contig12628:1236..15421691682905.6425374-CDS-L-elsbetiae_contig12628:1236..1542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12628 1237..1542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815454.1919594-UTR-L-elsbetiae_contig12628:1542..17541622815454.1919594-UTR-L-elsbetiae_contig12628:1542..1754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12628 1543..1754 +
1691682905.6525235-UTR-L-elsbetiae_contig12628:1542..17541691682905.6525235-UTR-L-elsbetiae_contig12628:1542..1754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12628 1543..1754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12628.2124.1prot_L-elsbetiae_contig12628.2124.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12628 1237..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12628.2124.1

>prot_L-elsbetiae_contig12628.2124.1 ID=prot_L-elsbetiae_contig12628.2124.1|Name=mRNA_L-elsbetiae_contig12628.2124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
RLSLRFCHGRAGVVDLASVRLGKRRLVRYWWSVVCVCLFFSSIWVTAGNE
CRSAWVVDSARETTTYFYEWIDDSHRYIYFASESWRGSYIPVHLERGGVS
F*
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mRNA from alignment at L-elsbetiae_contig12628:1237..1754+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12628.2124.1 ID=mRNA_L-elsbetiae_contig12628.2124.1|Name=mRNA_L-elsbetiae_contig12628.2124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=518bp|location=Sequence derived from alignment at L-elsbetiae_contig12628:1237..1754+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTCTCTCTGCGGTTTTGCCATGGTAGAGCGGGGGTTGTAGACCTCGC
CAGCGTTAGGCTTGGAAAACGCCGTTTGGTGCGATATTGGTGGTCGGTCG
TGTGTGTGTGTTTGTTTTTTTCTTCGATTTGGGTCACCGCTGGAAATGAA
TGTAGAAGCGCTTGGGTTGTTGACTCTGCTCGAGAAACAACTACATACTT
CTACGAGTGGATTGACGACTCGCACCGATATATTTATTTCGCTTCTGAGT
CTTGGCGTGGCTCGTACATACCCGTACACCTGGAACGCGGAGGGGTTTCA
TTTTGATGGGTTAGATAATTCTGCAAAAGAGAACGTATTATCGTATTAAT
GCGGTTGGTGGGACTGGCGTTGATTGAAAGTATAGCTTTTGGCAACCGTT
CGGAAAGTTGCAAGTGGTGATCGGCTACAGGTTCCCATGCAGGCATTTGT
AGTTCCGACTCTCCCCTCCCCAATGAGGCTGTCTTGTGTACATACTTCTG
TATATTTATAAACATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12628:1237..1754+

>mRNA_L-elsbetiae_contig12628.2124.1 ID=mRNA_L-elsbetiae_contig12628.2124.1|Name=mRNA_L-elsbetiae_contig12628.2124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig12628:1237..1754+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTCTCTCTGCGGTTTTGCCATGGTAGAGCGGGGGTTGTAGACCTCGC
CAGCGTTAGGCTTGGAAAACGCCGTTTGGTGCGATATTGGTGGTCGGTCG
TGTGTGTGTGTTTGTTTTTTTCTTCGATTTGGGTCACCGCTGGAAATGAA
TGTAGAAGCGCTTGGGTTGTTGACTCTGCTCGAGAAACAACTACATACTT
CTACGAGTGGATTGACGACTCGCACCGATATATTTATTTCGCTTCTGAGT
CTTGGCGTGGCTCGTACATACCCGTACACCTGGAACGCGGAGGGGTTTCA
TTTTGACGTCTCTCTCTGCGGTTTTGCCATGGTAGAGCGGGGGTTGTAGA
CCTCGCCAGCGTTAGGCTTGGAAAACGCCGTTTGGTGCGATATTGGTGGT
CGGTCGTGTGTGTGTGTTTGTTTTTTTCTTCGATTTGGGTCACCGCTGGA
AATGAATGTAGAAGCGCTTGGGTTGTTGACTCTGCTCGAGAAACAACTAC
ATACTTCTACGAGTGGATTGACGACTCGCACCGATATATTTATTTCGCTT
CTGAGTCTTGGCGTGGCTCGTACATACCCGTACACCTGGAACGCGGAGGG
GTTTCATTTTGA
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