mRNA_L-elsbetiae_contig12627.2122.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12627.2122.1
Unique NamemRNA_L-elsbetiae_contig12627.2122.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A0A164GMD8_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164GMD8_9CRUS)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   16 GGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            GGFPHSE+ GS++ A+SP LIAGYHVF RL LPRHPP AL  LTL
Sbjct:   30 GGFPHSEISGSKLFASSPKLIAGYHVFRRLSLPRHPPHALIHLTL 74
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: D4CI29_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 TaxID=411486 RepID=D4CI29_9CLOT)

HSP 1 Score: 69.3 bits (168), Expect = 1.190e-14
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLT 147
            T ++  GFPHS++ GS  + +SP L A YHVFHRL +PRHPPCAL  LT
Sbjct:    2 TGVLPAGFPHSDISGSMDICSSPKLFAAYHVFHRLLVPRHPPCALISLT 50
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: B0MI68_ANACD (Uncharacterized protein n=2 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MI68_ANACD)

HSP 1 Score: 68.9 bits (167), Expect = 3.550e-14
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            T++   GFPHSE+ GS+ + +SP LIA YHVFHRL +PRHPP AL  LT+
Sbjct:    2 TEVYSAGFPHSEICGSKDICSSPQLIAAYHVFHRLLVPRHPPYALSTLTI 51
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A0A3E3I0Q8_9FIRM (Uncharacterized protein n=1 Tax=Eisenbergiella massiliensis TaxID=1720294 RepID=A0A3E3I0Q8_9FIRM)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-13
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLT 147
            T++   GFPHS++ GS+ + +SP L A Y VFHRL +PRHPPCAL+ LT
Sbjct:    2 TEVCSAGFPHSDICGSRDICSSPQLFAAYRVFHRLLVPRHPPCALYSLT 50
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A0A414IPI3_9FIRM (Uncharacterized protein n=1 Tax=[Eubacterium] rectale TaxID=39491 RepID=A0A414IPI3_9FIRM)

HSP 1 Score: 65.5 bits (158), Expect = 5.060e-13
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   19 GFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCL 144
            GFPHS++ GS+++  SP L A YHVF RL +PRHPPCAL CL
Sbjct:    8 GFPHSDICGSRIICISPQLFAAYHVFLRLLVPRHPPCALLCL 49
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A0A8J4V5I2_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V5I2_9ROSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.500e-12
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   16 GGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCL 144
            GGFPHSE+PGS++V +SP LIA YHV HRL  PRHPP AL  L
Sbjct:  120 GGFPHSEIPGSKLVRSSPRLIAAYHVLHRLSAPRHPPNALKAL 162
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A7VEU3_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 TaxID=411489 RepID=A7VEU3_9CLOT)

HSP 1 Score: 63.2 bits (152), Expect = 3.530e-12
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            T++   GFPHS++ GS  + + P L A YHVF RL +PRHPPCAL  LTL
Sbjct:    2 TEVCSAGFPHSDICGSSDICSLPQLFAAYHVFLRLSVPRHPPCALSNLTL 51
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A5Z301_9FIRM (Uncharacterized protein n=3 Tax=Eubacterium ventriosum ATCC 27560 TaxID=411463 RepID=A5Z301_9FIRM)

HSP 1 Score: 64.7 bits (156), Expect = 8.680e-12
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            T ++  GFPHS++ GS  + +SP L A YHVF RL +PRHPPCAL  LT+
Sbjct:   32 TGVLPDGFPHSDICGSMDICSSPQLFAAYHVFLRLLVPRHPPCALISLTI 81
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A8SSM2_9FIRM (Uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 TaxID=411474 RepID=A8SSM2_9FIRM)

HSP 1 Score: 61.2 bits (147), Expect = 5.150e-11
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            T++   GFP+SE+ GS  +   P LIA YHVF RL +PRHPPCAL  LTL
Sbjct:   40 TEVYSAGFPNSEICGSLNICFLPQLIAAYHVFLRLSVPRHPPCALSNLTL 89
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BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Match: A8SWC8_9FIRM (Uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 TaxID=411474 RepID=A8SWC8_9FIRM)

HSP 1 Score: 60.8 bits (146), Expect = 1.040e-10
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 TDLMVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL 150
            T++    FPHSE+ GS  +   P LIA YHVF RL +PRHPPCAL  LTL
Sbjct:   55 TEVYSARFPHSEICGSLNICFLPQLIAAYHVFLRLSVPRHPPCALSNLTL 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12627.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A164GMD8_9CRUS1.040e-1473.33Uncharacterized protein n=1 Tax=Daphnia magna TaxI... [more]
D4CI29_9CLOT1.190e-1459.18Uncharacterized protein n=1 Tax=Clostridium sp. M6... [more]
B0MI68_ANACD3.550e-1460.00Uncharacterized protein n=2 Tax=Anaerostipes cacca... [more]
A0A3E3I0Q8_9FIRM1.600e-1357.14Uncharacterized protein n=1 Tax=Eisenbergiella mas... [more]
A0A414IPI3_9FIRM5.060e-1364.29Uncharacterized protein n=1 Tax=[Eubacterium] rect... [more]
A0A8J4V5I2_9ROSI2.500e-1269.77Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A7VEU3_9CLOT3.530e-1256.00Uncharacterized protein n=1 Tax=Clostridium sp. L2... [more]
A5Z301_9FIRM8.680e-1256.00Uncharacterized protein n=3 Tax=Eubacterium ventri... [more]
A8SSM2_9FIRM5.150e-1158.00Uncharacterized protein n=1 Tax=Coprococcus eutact... [more]
A8SWC8_9FIRM1.040e-1058.00Uncharacterized protein n=1 Tax=Coprococcus eutact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12627contigL-elsbetiae_contig12627:2905..3057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue9.3e-10
Seed eggNOG ortholog411490.ANACAC_01115
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ORF located using Blastx
EggNOG OGs1VFF8@1239,24S9D@186801,2DPDN@1,331NP@2
COG Functional cat.S
Best tax levelClostridia
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.873048-CDS-L-elsbetiae_contig12627:2904..30481622815453.873048-CDS-L-elsbetiae_contig12627:2904..3048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 2905..3048 -
1691682905.5878646-CDS-L-elsbetiae_contig12627:2904..30481691682905.5878646-CDS-L-elsbetiae_contig12627:2904..3048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 2905..3048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815454.097843-UTR-L-elsbetiae_contig12627:3048..30571622815454.097843-UTR-L-elsbetiae_contig12627:3048..3057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 3049..3057 -
1691682905.6013713-UTR-L-elsbetiae_contig12627:3048..30571691682905.6013713-UTR-L-elsbetiae_contig12627:3048..3057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 3049..3057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12627.2122.1prot_L-elsbetiae_contig12627.2122.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12627 2905..3048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12627.2122.1

>prot_L-elsbetiae_contig12627.2122.1 ID=prot_L-elsbetiae_contig12627.2122.1|Name=mRNA_L-elsbetiae_contig12627.2122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
MVGGFPHSEMPGSQVVATSPSLIAGYHVFHRLWLPRHPPCALHCLTL*
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mRNA from alignment at L-elsbetiae_contig12627:2905..3057-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12627.2122.1 ID=mRNA_L-elsbetiae_contig12627.2122.1|Name=mRNA_L-elsbetiae_contig12627.2122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:2905..3057- (Laminarionema elsbetiae ELsaHSoW15)
ACCGACCTTATGGTCGGTGGGTTTCCCCATTCAGAAATGCCCGGGTCACA
GGTTGTTGCCACCTCACCGAGCCTTATCGCAGGCTACCACGTCTTTCATC
GCCTCTGGCTGCCTAGGCATCCACCGTGTGCGCTTCATTGCTTGACCCTA
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12627:2905..3057-

>mRNA_L-elsbetiae_contig12627.2122.1 ID=mRNA_L-elsbetiae_contig12627.2122.1|Name=mRNA_L-elsbetiae_contig12627.2122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:2905..3057- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGGTGGGTTTCCCCATTCAGAAATGCCCGGGTCACAGGTTGTTGC
CACCTCACCGAGCCTTATCGCAGGCTACCACGTCTTTCATCGCCTCTGGC
TGCCTAGGCATCCACCGTGTGCGCTTCATTGCTTGACCCTATAAATGGTC
GGTGGGTTTCCCCATTCAGAAATGCCCGGGTCACAGGTTGTTGCCACCTC
ACCGAGCCTTATCGCAGGCTACCACGTCTTTCATCGCCTCTGGCTGCCTA
GGCATCCACCGTGTGCGCTTCATTGCTTGACCCTATAA
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