mRNA_L-elsbetiae_contig12627.2120.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12627.2120.1
Unique NamemRNA_L-elsbetiae_contig12627.2120.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A0R3R948_9BILA (Uncharacterized protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3R948_9BILA)

HSP 1 Score: 149 bits (376), Expect = 1.350e-44
Identity = 82/110 (74.55%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 MQREEPYLPLTSTEAGRDSGVPSGTRNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP*SRSQSGSESATRLREVGIASNRES 330
            MQREEPYL LT  E  RD  VPSGTR     LPARNGGNSKETAGDKPEEGGDDVKSSWPLR GLHT YNGR +GL+A + + IP + SQSG ESATRL EVGIASNR S
Sbjct:    1 MQREEPYLALTCRELSRDGLVPSGTRT---QLPARNGGNSKETAGDKPEEGGDDVKSSWPLRPGLHTYYNGRDRGLQAGDGKPIPETLSQSGLESATRLHEVGIASNRRS 107          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: UPI001A17FC58 (Uncharacterized protein n=1 Tax=Moritella sp. F3 TaxID=2718882 RepID=UPI001A17FC58)

HSP 1 Score: 116 bits (290), Expect = 5.100e-32
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP 255
            RNP PYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNG YKGL+  + +RIP
Sbjct:   11 RNPYPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGAYKGLQTSDGKRIP 70          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: UPI001BBB0189 (Uncharacterized protein n=2 Tax=Shewanella TaxID=22 RepID=UPI001BBB0189)

HSP 1 Score: 112 bits (280), Expect = 1.900e-30
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRI 252
            RNP PYLPARNGGN +ETAGDKPEEGGDDVKSSWPLRVGLHTCYNG+Y+GLR+RE + I
Sbjct:   11 RNPYPYLPARNGGNFRETAGDKPEEGGDDVKSSWPLRVGLHTCYNGKYRGLRSREVELI 69          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A2S7V079_9GAMM (Uncharacterized protein n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V079_9GAMM)

HSP 1 Score: 112 bits (281), Expect = 2.710e-30
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  116 TLRRLPVTNRRKVGTTSSHHGPYG*GYTRATMAGTKGCELARVSESLKAGLSPDRSLQLDSVKSESLVIVN 328
            TLRRLPVTNRRKVGTTSSHHGPY  GYTRATMA TKGC+LARVS S KA  SPD SLQLDS+KSESLVIV+
Sbjct:    3 TLRRLPVTNRRKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSESLVIVD 73          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A5K7Y635_9GAMM (Uncharacterized protein n=1 Tax=Cobetia sp. AM6 TaxID=2661553 RepID=A0A5K7Y635_9GAMM)

HSP 1 Score: 108 bits (269), Expect = 8.050e-29
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP 255
            RNP PYLPA N GNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNG+YKGL+  E + IP
Sbjct:   11 RNPYPYLPASNVGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGKYKGLQYCEVEPIP 70          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A2S7V0H2_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V0H2_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 2.100e-28
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 2
Query:  107 MVGTLRRLPVTNRRKVGTTSSHHGPYG*GYTRATMAGTKGCELARVSESLKAGLSPDRSLQLDSVKSE 310
            M+ TLRRLPVTNRRKVGTTSSHHGPY  GYTRATMA TKGC+LARVS S KA  SPD SLQLDS+KSE
Sbjct:    1 MLRTLRRLPVTNRRKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSE 68          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A0T7DVV3_9VIBR (Uncharacterized protein n=1 Tax=Vibrio coralliirubri TaxID=1516159 RepID=A0A0T7DVV3_9VIBR)

HSP 1 Score: 105 bits (263), Expect = 7.360e-28
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP 255
            RNP P LPA N GNS+ETAGDKPEEGGDDVKSSWPLRVGLHTCYNG Y+G +A +S+RIP
Sbjct:   11 RNPYPCLPASNVGNSRETAGDKPEEGGDDVKSSWPLRVGLHTCYNGAYRGQQASDSERIP 70          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: UPI0019B69310 (Uncharacterized protein n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B69310)

HSP 1 Score: 103 bits (256), Expect = 1.040e-26
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRI 252
            RNP PYLPA + G+ KETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRY+ LR+RE++ I
Sbjct:   23 RNPYPYLPASDVGDYKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYRRLRSREAELI 81          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A1I7T9A8_9PELO (Uncharacterized protein n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7T9A8_9PELO)

HSP 1 Score: 102 bits (254), Expect = 2.280e-26
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   94 LPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP*SRSQSGSESATRLREVGIASNRES 330
            LPAR GGNS +TA    EEGGDDVKSS PL +GLH CYNGRYKGLR RE +RIP SRSQ G  SATR  EVG+ASNR S
Sbjct:    2 LPARYGGNSWDTAVVNTEEGGDDVKSSCPLCLGLHACYNGRYKGLRYREVERIPKSRSQFGLGSATRPHEVGVASNRRS 80          
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Match: A0A6B0USQ1_IXORI (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6B0USQ1_IXORI)

HSP 1 Score: 103 bits (256), Expect = 5.220e-26
Identity = 58/85 (68.24%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   76 RNPCPYLPARNGGNSKETAGDKPEEGGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP*SRSQSGSESATRLREVGIASNRES 330
            RNP   LPAR GG+S ETAG   EEGGDDVKSS PL +GLH CYNGRY GLR  E + IP SRSQ G  SATR  EVG+ASNR S
Sbjct:   50 RNPRSMLPARGGGDSWETAGVNSEEGGDDVKSSCPLCLGLHACYNGRYNGLRYCEVELIPKSRSQFGLGSATRPHEVGVASNRRS 134          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12627.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R3R948_9BILA1.350e-4474.55Uncharacterized protein n=1 Tax=Brugia timori TaxI... [more]
UPI001A17FC585.100e-3286.67Uncharacterized protein n=1 Tax=Moritella sp. F3 T... [more]
UPI001BBB01891.900e-3084.75Uncharacterized protein n=2 Tax=Shewanella TaxID=2... [more]
A0A2S7V079_9GAMM2.710e-3084.51Uncharacterized protein n=1 Tax=Psychrosphaera sar... [more]
A0A5K7Y635_9GAMM8.050e-2983.33Uncharacterized protein n=1 Tax=Cobetia sp. AM6 Ta... [more]
A0A2S7V0H2_9GAMM2.100e-2882.35Uncharacterized protein (Fragment) n=1 Tax=Psychro... [more]
A0A0T7DVV3_9VIBR7.360e-2880.00Uncharacterized protein n=1 Tax=Vibrio coralliirub... [more]
UPI0019B693101.040e-2679.66Uncharacterized protein n=1 Tax=Saccharospirillum ... [more]
A0A1I7T9A8_9PELO2.280e-2672.15Uncharacterized protein n=1 Tax=Caenorhabditis tro... [more]
A0A6B0USQ1_IXORI5.220e-2668.24Uncharacterized protein ycf68 (Fragment) n=2 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12627contigL-elsbetiae_contig12627:1465..1862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.8
Seed ortholog evalue6.5e-22
Seed eggNOG ortholog1205908.AKXW01000016_gene2640
Hectar predicted targeting categoryother localisation
EggNOG OGs1QK1W@1224,1TI4F@1236,1XYCQ@135623,2DMHR@1,32RMI@2
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12627.2120.1prot_L-elsbetiae_contig12627.2120.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12627 1465..1790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.765404-CDS-L-elsbetiae_contig12627:1464..15391622815453.765404-CDS-L-elsbetiae_contig12627:1464..1539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 1465..1539 +
1691682905.5389335-CDS-L-elsbetiae_contig12627:1464..15391691682905.5389335-CDS-L-elsbetiae_contig12627:1464..1539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 1465..1539 +
1622815453.775946-CDS-L-elsbetiae_contig12627:1607..17901622815453.775946-CDS-L-elsbetiae_contig12627:1607..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 1608..1790 +
1691682905.5486844-CDS-L-elsbetiae_contig12627:1607..17901691682905.5486844-CDS-L-elsbetiae_contig12627:1607..1790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 1608..1790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.7848618-UTR-L-elsbetiae_contig12627:1790..18621622815453.7848618-UTR-L-elsbetiae_contig12627:1790..1862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 1791..1862 +
1691682905.556779-UTR-L-elsbetiae_contig12627:1790..18621691682905.556779-UTR-L-elsbetiae_contig12627:1790..1862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 1791..1862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12627.2120.1

>prot_L-elsbetiae_contig12627.2120.1 ID=prot_L-elsbetiae_contig12627.2120.1|Name=mRNA_L-elsbetiae_contig12627.2120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
MQREEPYLPLTSTEAGRDSGVPSGTRNPCPYLPARNGGNSKETAGDKPEE
GGDDVKSSWPLRVGLHTCYNGRYKGLRARESQRIP*
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mRNA from alignment at L-elsbetiae_contig12627:1465..1862+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12627.2120.1 ID=mRNA_L-elsbetiae_contig12627.2120.1|Name=mRNA_L-elsbetiae_contig12627.2120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=398bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:1465..1862+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGCGAAGAACCTTACCTACCCTTGACATCTACAGAAGCCGGAAG AGATTCTGGTGTGCCTTCGGGAACTGTAAGACAGGTGCTGCATGGCTGTC GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGTAACGAGCGCAACC CTTGTCCTTATTTGCCAGCACGTAATGGTGGGAACTCTAAGGAGACTGCC GGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGGCCCTT ACGGGTAGGGCTACACACGTGCTACAATGGCCGGTACAAAGGGCTGCGAG CTCGCGAGAGTCAGCGAATCCCTTAAAGCCGGTCTCAGTCCGGATCGGAG TCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGTGAATCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12627:1465..1862+

>mRNA_L-elsbetiae_contig12627.2120.1 ID=mRNA_L-elsbetiae_contig12627.2120.1|Name=mRNA_L-elsbetiae_contig12627.2120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:1465..1862+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGCGAAGAACCTTACCTACCCTTGACATCTACAGAAGCCGGAAG
AGATTCTGGTGTGCCTTCGGGAACTATGCAACGCGAAGAACCTTACCTAC
CCTTGACATCTACAGAAGCCGGAAGAGATTCTGGTGTGCCTTCGGGAACT
CGCAACCCTTGTCCTTATTTGCCAGCACGTAATGGTGGGAACTCTAAGGA
GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAGTCATCAT
GGCCCTTACGGGTAGGGCTACACACGTGCTACAATGGCCGGTACAAAGGG
CTGCGAGCTCGCGAGAGTCAGCGAATCCCTTAACGCAACCCTTGTCCTTA
TTTGCCAGCACGTAATGGTGGGAACTCTAAGGAGACTGCCGGTGACAAAC
CGGAGGAAGGTGGGGACGACGTCAAGTCATCATGGCCCTTACGGGTAGGG
CTACACACGTGCTACAATGGCCGGTACAAAGGGCTGCGAGCTCGCGAGAG
TCAGCGAATCCCTTAA
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