mRNA_L-elsbetiae_contig12627.2119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12627.2119.1
Unique NamemRNA_L-elsbetiae_contig12627.2119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: A0A124F645_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A124F645_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 7.570e-22
Identity = 56/86 (65.12%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 SKLDPLPLDLHVLGLPPAFNLSHDQTLQFKIIP------KAAKANQTWLKVQTNSFNYRLKTFVSKTFV*KRSFS*PLALIFGDLS 240
            SKLD LPLDLHVLGLPPAFNLSHDQTLQFKI        K  +ANQTWLKVQTNSF    K  V   F+ +      LALIFGDLS
Sbjct:    1 SKLDLLPLDLHVLGLPPAFNLSHDQTLQFKIYAVLTCHSKVTEANQTWLKVQTNSFKTDNKERVFIIFLLES-----LALIFGDLS 81          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001D023143 (hypothetical protein n=1 Tax=Halomonas sp. 1M45 TaxID=1255591 RepID=UPI001D023143)

HSP 1 Score: 89.0 bits (219), Expect = 6.520e-20
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  339 AGLSEEGVFYAVPGVCQPLFSASEANNEPALTS*QTKAFTP*CCLKSPLVTLGVPGSGCVLYGFAAGLAR 548
            A LSEEGVFYA P VCQPLFSA EA++         + F+P     SPLVTLGVPGSGCVLYGFAAGLAR
Sbjct:   22 ACLSEEGVFYAFPDVCQPLFSAGEASDLNLANFLTNRRFSP----SSPLVTLGVPGSGCVLYGFAAGLAR 87          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001D0BCEFE (hypothetical protein n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0BCEFE)

HSP 1 Score: 89.0 bits (219), Expect = 1.940e-19
Identity = 54/101 (53.47%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  261 MNYLIKLLKSGFAVR*R*NHRAAGELAGLSEEGVFYAVPGVCQPLFSASEANNEPALTS*QTKAFTP*CCLKSPLVTLGVPGSGCVLYGFAAGLARGLMKS 563
            MNYLI  LKS      + +  +    A LSEEGVFYA PGVCQPL  A E + E        + F+P     SPL TLGVPGSGCVLYGFAAG ARG  K+
Sbjct:    1 MNYLIIFLKSDSL---KLDIDSMTGAACLSEEGVFYAFPGVCQPLIFAVEVSLELLANFLANRRFSP----SSPLATLGVPGSGCVLYGFAAGSARGFWKN 94          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: A0A1J8Q002_9GAMM (Uncharacterized protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A1J8Q002_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 4.860e-19
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 SKLDPLPLDLHVLGLPPAFNLSHDQTLQFKII------PKAAKANQTWLKVQTNSF 150
            SKLD LPLDLHVLGLPPAFNLSHDQTLQFKI       PK  +A+QTWLKVQTNSF
Sbjct:   13 SKLDLLPLDLHVLGLPPAFNLSHDQTLQFKIYVILTCHPKVTEADQTWLKVQTNSF 68          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001EE36D24 (hypothetical protein n=1 Tax=Halomonas sp. A3H3 TaxID=1346287 RepID=UPI001EE36D24)

HSP 1 Score: 85.5 bits (210), Expect = 8.950e-19
Identity = 44/56 (78.57%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 SKLDPLPLDLHVLGLPPAFNLSHDQTLQFKII------PKAAKANQTWLKVQTNSF 150
            SKL  LPLDLHVLGLPPAFNLSHDQTLQFKI       P+A KA+QTWLKVQTNSF
Sbjct:    6 SKLPLLPLDLHVLGLPPAFNLSHDQTLQFKIYVILTCHPRATKADQTWLKVQTNSF 61          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: A0A7U9BXN5_9GAMM (Uncharacterized protein n=2 Tax=Halomonas boliviensis TaxID=223527 RepID=A0A7U9BXN5_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 1.080e-18
Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   16 LPLDLHVLGLPPAFNLSHDQTLQFKIIP------KAAKANQTWLKVQTNSFNYRLKTFV 174
            LPLDLHVLGLPPAFNLSHDQTLQFKI        K  +ANQTWLKVQTNSFN  LKT+V
Sbjct:   70 LPLDLHVLGLPPAFNLSHDQTLQFKIYAVLTRHSKVTEANQTWLKVQTNSFNCCLKTYV 128          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001D0A1F59 (hypothetical protein n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0A1F59)

HSP 1 Score: 82.0 bits (201), Expect = 4.580e-17
Identity = 52/103 (50.49%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  261 MNYLIKLLKSGFAVR*R*NHRAAGELAG---LSEEGVFYAVPGVCQPLFSASEANNEPALTS*QTKAFTP*CCLKSPLVTLGVPGSGCVLYGFAAGLARGLMK 560
            MNYLI  LKS             G + G   LSEEGVFYA  GVCQPL  A + + E        + F P     SPL TLGVPGSGCVLYGFAAG ARG  +
Sbjct:    1 MNYLIIFLKSDSLKL------DIGSMTGAACLSEEGVFYAFHGVCQPLIFAVDVSLEHLANLLTNRRFYP----SSPLATLGVPGSGCVLYGFAAGSARGFSE 93          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: H0IZD6_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Halomonas sp. GFAJ-1 TaxID=1118153 RepID=H0IZD6_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-16
Identity = 52/108 (48.15%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  245 ISKRPHELPDQIVKERFRCQMTLKSSGCR*TGGPQRGRRILRSSWC---LSTAVFSE*SEQ*TCSNFLTNQGFYTLMLLKITAGNAWRPRQRMRTLRLRCRVGKGFDE 559
            I KRPHELPDQIVKERF          C      + G        C    S   FSE  E    SN LTN+ F        TAGNAWRPRQRMRTLR+R R+GKG+ E
Sbjct:    5 IGKRPHELPDQIVKERFANNWLAVELACL----SEEGVFYAFPGGCQPLFSVTEFSERGEPQNRSNLLTNRRFSP----SFTAGNAWRPRQRMRTLRIRRRLGKGYFE 104          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001F15B265 (hypothetical protein n=1 Tax=Halomonas sp. G11 TaxID=1684425 RepID=UPI001F15B265)

HSP 1 Score: 80.5 bits (197), Expect = 3.760e-16
Identity = 58/112 (51.79%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  237 VSPS-ASAHMNYLIKLLKSGFAVR*R*NHRAAGELAGLSEEGVFYAVPGVCQPLFSASEANNEPALTS*Q------TKAFTP*CCLKSPLVTLGVPGSGCVLYGFAAGLARG 551
            +SPS ASAHMNYLI LLKS   VR R  +     L  LSEEGVFYA+  +CQ L   S+ N   AL S         + FTP    + PL T  VPGSGCVLY F AGLA G
Sbjct:   27 LSPSSASAHMNYLITLLKS---VRLRAVNNMTRPL--LSEEGVFYALRSICQRLIGRSKGNVRLALPSNSLPNLLTNQGFTP----QPPLATPCVPGSGCVLYDFTAGLASG 129          
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Match: UPI001C131B73 (hypothetical protein n=1 Tax=Halomonas sp. B1.N12 TaxID=2591147 RepID=UPI001C131B73)

HSP 1 Score: 80.5 bits (197), Expect = 4.370e-16
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  339 AGLSEEGVFYAVPGVCQPLFSASEANNEPALTS*QTKAFTP*CCLKSPLVTLGVPGSGCVLYGFAAGLARGLMK 560
            A LSEEGVFYA P +CQPLFSA EA++         + F+P     SPL TLGVPGSGCVLYGF   LA  + K
Sbjct:    8 ACLSEEGVFYAFPDICQPLFSADEASDLNLANFLTNRRFSP----SSPLATLGVPGSGCVLYGFVGRLASTIFK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12627.2119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A124F645_9GAMM7.570e-2265.12Uncharacterized protein (Fragment) n=1 Tax=Halomon... [more]
UPI001D0231436.520e-2067.14hypothetical protein n=1 Tax=Halomonas sp. 1M45 Ta... [more]
UPI001D0BCEFE1.940e-1953.47hypothetical protein n=1 Tax=Halomonas malpeensis ... [more]
A0A1J8Q002_9GAMM4.860e-1978.57Uncharacterized protein n=2 Tax=Halomonas TaxID=27... [more]
UPI001EE36D248.950e-1978.57hypothetical protein n=1 Tax=Halomonas sp. A3H3 Ta... [more]
A0A7U9BXN5_9GAMM1.080e-1876.27Uncharacterized protein n=2 Tax=Halomonas bolivien... [more]
UPI001D0A1F594.580e-1750.49hypothetical protein n=1 Tax=Halomonas malpeensis ... [more]
H0IZD6_9GAMM2.690e-1648.15Uncharacterized protein (Fragment) n=1 Tax=Halomon... [more]
UPI001F15B2653.760e-1651.79hypothetical protein n=1 Tax=Halomonas sp. G11 Tax... [more]
UPI001C131B734.370e-1656.76hypothetical protein n=1 Tax=Halomonas sp. B1.N12 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12627contigL-elsbetiae_contig12627:2..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size565
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12627.2119.1prot_L-elsbetiae_contig12627.2119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12627 375..596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.7021706-UTR-L-elsbetiae_contig12627:1..3741622815453.7021706-UTR-L-elsbetiae_contig12627:1..374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 2..374 -
1691682905.5138113-UTR-L-elsbetiae_contig12627:1..3741691682905.5138113-UTR-L-elsbetiae_contig12627:1..374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12627 2..374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.7174902-CDS-L-elsbetiae_contig12627:374..4701622815453.7174902-CDS-L-elsbetiae_contig12627:374..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 375..470 -
1691682905.5224679-CDS-L-elsbetiae_contig12627:374..4701691682905.5224679-CDS-L-elsbetiae_contig12627:374..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 375..470 -
1622815453.7315648-CDS-L-elsbetiae_contig12627:500..5961622815453.7315648-CDS-L-elsbetiae_contig12627:500..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 501..596 -
1691682905.530439-CDS-L-elsbetiae_contig12627:500..5961691682905.530439-CDS-L-elsbetiae_contig12627:500..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12627 501..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12627.2119.1

>prot_L-elsbetiae_contig12627.2119.1 ID=prot_L-elsbetiae_contig12627.2119.1|Name=mRNA_L-elsbetiae_contig12627.2119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
SKLDPLPLDLHVLGLPPAFNLSHDQTLQFKIIPKAAKANQTWLKVQTNSF
NYRLKTFVSKTFV*
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mRNA from alignment at L-elsbetiae_contig12627:2..596-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12627.2119.1 ID=mRNA_L-elsbetiae_contig12627.2119.1|Name=mRNA_L-elsbetiae_contig12627.2119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=595bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:2..596- (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGCTAGATCCGTTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCC AGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTTAAAATCATTGTGA TCCTTACTCGCTTACCTCAGGACTAGCCTAAGGCAGCAAAAGCGAATCAA ACTTGGCTCAAGGTTCAAACGAATTCATTCAACTATCGTTTAAAAACATT TGTTTCAAAAACATTTGTTTAAAAACGGTCGTTCTCATGACCGCTTGCCT TGATATTTGGTGATTTGTCTCACCATCAGCAAGCGCCCACATGAATTACC TGATCAAATTGTTAAAGAGCGGTTTCGCTGTCAGATGACGTTAAAATCAT CGGGCTGCCGGTGAACTGGCGGGCCTCAGCGAGGAAGGCGTATTCTACGC AGTTCCTGGTGTTTGTCAACCGCTGTTTTCAGCGAGTGAAGCGAACAATG AACCTGCTCTAACTTCCTGACAAACCAAGGCTTTTACACCTTAATGTTGC TTAAAATCACCGCTGGTAACGCTTGGCGTCCCCGGCAGCGGATGCGTACT TTACGGCTTCGCTGCCGGGTTGGCAAGGGGTTTGATGAAATCAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12627:2..596-

>mRNA_L-elsbetiae_contig12627.2119.1 ID=mRNA_L-elsbetiae_contig12627.2119.1|Name=mRNA_L-elsbetiae_contig12627.2119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig12627:2..596- (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGCTAGATCCGTTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCC
AGCGTTCAATCTGAGCCATGATCAAACTCTTCAGTTTAAAATCATTAGCA
AGCTAGATCCGTTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCG
TTCAATCTGAGCCATGATCAAACTCTTCAGTTTAAAATCATTCCTAAGGC
AGCAAAAGCGAATCAAACTTGGCTCAAGGTTCAAACGAATTCATTCAACT
ATCGTTTAAAAACATTTGTTTCAAAAACATTTGTTTAACCTAAGGCAGCA
AAAGCGAATCAAACTTGGCTCAAGGTTCAAACGAATTCATTCAACTATCG
TTTAAAAACATTTGTTTCAAAAACATTTGTTTAA
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