mRNA_L-elsbetiae_contig12625.2118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12625.2118.1
Unique NamemRNA_L-elsbetiae_contig12625.2118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12625.2118.1 vs. uniprot
Match: D8LBB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB8_ECTSI)

HSP 1 Score: 497 bits (1280), Expect = 3.940e-173
Identity = 238/270 (88.15%), Postives = 252/270 (93.33%), Query Frame = 1 
Query:   19 VYVLTGLFDEMTGKLPAGGFPHAVFGDSLRYFRGLVGLAEARHALREAGVSPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGADRHFSRRHGRRDHNWQWDMMKSPWSLGLMRKGRLALGVPEAEADEFEEAGIIAFPGHVVRHKDSVKNGGYGKTIGTLVLRSPESAFVCVQVQGERLGQAVAAAEELGVELPPRFEQKGRFKFAINELDAWAMVGGAARNDAEHAVVCGRKAIPKGEPGEGFVRVAFNMRWGWQDDPRV 828
            V+VLTGLFDE+TG LP  GFP+AVFG SLRYF+GL+G AEA+HAL+EAGV+PGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGA+RHFSR HGRRDHNWQWDM+KSPWSLGLM KGRLALGV E EA+EFEEAGIIAFPGHVV+HKDSVKNGGYGKTIGTLVLRSPESAFVCVQ QGERLG+AV  AEELGVELPPR  +KGRFKFAINELDAWAMVGG ARNDAEHAVVCGRK IP GEPGEGFVRVAFNMRWGWQDD RV
Sbjct:  257 VFVLTGLFDELTGLLPENGFPYAVFGSSLRYFKGLIGSAEAKHALKEAGVTPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGANRHFSRVHGRRDHNWQWDMLKSPWSLGLMAKGRLALGVSEEEANEFEEAGIIAFPGHVVKHKDSVKNGGYGKTIGTLVLRSPESAFVCVQGQGERLGRAVELAEELGVELPPRVAEKGRFKFAINELDAWAMVGGTARNDAEHAVVCGRKVIPAGEPGEGFVRVAFNMRWGWQDDRRV 526
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12625.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB8_ECTSI3.940e-17388.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12625contigL-elsbetiae_contig12625:3748..5163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004500.1
Exons2
Model size831
Cds size831
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.6504297-CDS-L-elsbetiae_contig12625:3747..40141622815453.6504297-CDS-L-elsbetiae_contig12625:3747..4014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 3748..4014 -
1691682905.4969742-CDS-L-elsbetiae_contig12625:3747..40141691682905.4969742-CDS-L-elsbetiae_contig12625:3747..4014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 3748..4014 -
1622815453.6669266-CDS-L-elsbetiae_contig12625:4599..51631622815453.6669266-CDS-L-elsbetiae_contig12625:4599..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 4600..5163 -
1691682905.5057669-CDS-L-elsbetiae_contig12625:4599..51631691682905.5057669-CDS-L-elsbetiae_contig12625:4599..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 4600..5163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12625.2118.1prot_L-elsbetiae_contig12625.2118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12625 3748..5163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12625.2118.1

>prot_L-elsbetiae_contig12625.2118.1 ID=prot_L-elsbetiae_contig12625.2118.1|Name=mRNA_L-elsbetiae_contig12625.2118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
PSTTPPVYVLTGLFDEMTGKLPAGGFPHAVFGDSLRYFRGLVGLAEARHA
LREAGVSPGDRSGAIGEAWSGGGSMYPPERPAGARKVVAAPLRQGEGADR
HFSRRHGRRDHNWQWDMMKSPWSLGLMRKGRLALGVPEAEADEFEEAGII
AFPGHVVRHKDSVKNGGYGKTIGTLVLRSPESAFVCVQVQGERLGQAVAA
AEELGVELPPRFEQKGRFKFAINELDAWAMVGGAARNDAEHAVVCGRKAI
PKGEPGEGFVRVAFNMRWGWQDDPRV*
back to top

mRNA from alignment at L-elsbetiae_contig12625:3748..5163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12625.2118.1 ID=mRNA_L-elsbetiae_contig12625.2118.1|Name=mRNA_L-elsbetiae_contig12625.2118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig12625:3748..5163- (Laminarionema elsbetiae ELsaHSoW15)
CCATCGACCACCCCGCCAGTGTACGTCCTCACAGGCCTCTTCGACGAGAT
GACCGGCAAGCTCCCCGCGGGAGGCTTCCCGCACGCCGTCTTCGGCGACT
CGCTGCGCTACTTCAGGGGCCTCGTCGGGCTCGCCGAGGCCCGGCACGCG
CTCCGCGAGGCCGGCGTCAGCCCCGGCGACCGCAGCGGCGCGATCGGCGA
GGCGTGGAGCGGGGGCGGCTCCATGTACCCCCCGGAGCGCCCGGCCGGCG
CGCGGAAGGTGGTGGCGGCGCCCCTGCGCCAGGGGGAGGGGGCGGACCGG
CACTTCTCCCGGAGGCACGGGCGGCGGGACCACAACTGGCAGTGGGACAT
GATGAAGAGCCCGTGGTCGCTGGGGCTGATGCGGAAGGGCAGGCTCGCCC
TGGGGGTTCCGGAGGCGGAGGCAGACGAGTTCGAGGAGGCCGGGATCATC
GCGTTCCCGGGCCACGTGGTGAGGCACAAGGACTCGGTGAAGAACGGCGG
GTACGGGAAGACGATCGGGACGCTGGTGCTGAGGTCCCCGGAGTCGGCGT
TCGTGTGCGTGCAGGTGGGCTGGCTGGCTGGCTGGCTGGTTGGGTGTGGT
GTGCGGGGGTGTTGGCCTGTGCTAATGGGACGGGCGGGAGGGCGGGGAGG
GTGGCGGTCATTTGGGGCTTGTGGAAGCCGGGCAGGCAGGCGGGAAGGTC
GAGTCGACGGCATCAGAGCGCTCGTTCCCGGAGGTCGACGGCATCGTCGC
TCGCATGTTGATAGCTGTGTTGCCGCTTTGTGTGACGGCAGCAAAATGGC
GACAGCGAGCATATTGGGGGTCTGTTGTGTAACTGCTGTGCACGTATGCG
TGTAGAGGACGGGTAGACCGGGGCTGAGAAGCCGTCGAGAAGCGACGTTT
ATTAACAGTTTCGCAAGTCAAGAGTGCGAGTAAGAGTAAACTACTGTATG
TGTATCCAAACCCCCCAAAGTCTCCCACCCCAGGGGGGCGGGGGGCCACC
CCTCCCTCAATTTTGTTTTTTTTTCGTTCACATTTTATTTAAATGCTTAT
CTTACTCACCCGACCCGCCCTGCGCACACCTGCGGCGGTATGAAGTATGT
ACATAAATACCCCCACCTCCTGCTCGCGTTTCTTGCACGGGGCCCCCAGG
TGCAGGGCGAGCGCCTGGGGCAGGCCGTCGCGGCGGCCGAGGAACTCGGC
GTGGAGCTGCCCCCCAGGTTCGAGCAGAAGGGGCGGTTCAAGTTCGCCAT
CAACGAGTTGGACGCCTGGGCGATGGTAGGCGGCGCGGCGAGGAACGACG
CGGAGCACGCCGTGGTGTGCGGGAGGAAGGCCATCCCGAAGGGGGAGCCC
GGGGAAGGCTTCGTCCGGGTGGCGTTCAACATGAGGTGGGGGTGGCAGGA
CGACCCGAGGGTGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12625:3748..5163-

>mRNA_L-elsbetiae_contig12625.2118.1 ID=mRNA_L-elsbetiae_contig12625.2118.1|Name=mRNA_L-elsbetiae_contig12625.2118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig12625:3748..5163- (Laminarionema elsbetiae ELsaHSoW15)
CCATCGACCACCCCGCCAGTGTACGTCCTCACAGGCCTCTTCGACGAGAT
GACCGGCAAGCTCCCCGCGGGAGGCTTCCCGCACGCCGTCTTCGGCGACT
CGCTGCGCTACTTCAGGGGCCTCGTCGGGCTCGCCGAGGCCCGGCACGCG
CTCCGCGAGGCCGGCGTCAGCCCCGGCGACCGCAGCGGCGCGATCGGCGA
GGCGTGGAGCGGGGGCGGCTCCATGTACCCCCCGGAGCGCCCGGCCGGCG
CGCGGAAGGTGGTGGCGGCGCCCCTGCGCCAGGGGGAGGGGGCGGACCGG
CACTTCTCCCGGAGGCACGGGCGGCGGGACCACAACTGGCAGTGGGACAT
GATGAAGAGCCCGTGGTCGCTGGGGCTGATGCGGAAGGGCAGGCTCGCCC
TGGGGGTTCCGGAGGCGGAGGCAGACGAGTTCGAGGAGGCCGGGATCATC
GCGTTCCCGGGCCACGTGGTGAGGCACAAGGACTCGGTGAAGAACGGCGG
GTACGGGAAGACGATCGGGACGCTGGTGCTGAGGTCCCCGGAGTCGGCGT
TCGTGTGCGTGCAGCCATCGACCACCCCGCCAGTGTACGTCCTCACAGGC
CTCTTCGACGAGATGACCGGCAAGCTCCCCGCGGGAGGCTTCCCGCACGC
CGTCTTCGGCGACTCGCTGCGCTACTTCAGGGGCCTCGTCGGGCTCGCCG
AGGCCCGGCACGCGCTCCGCGAGGCCGGCGTCAGCCCCGGCGACCGCAGC
GGCGCGATCGGCGAGGCGTGGAGCGGGGGCGGCTCCATGTACCCCCCGGA
GCGCCCGGCCGGCGCGCGGAAGGTGGTGGCGGCGCCCCTGCGCCAGGGGG
AGGGGGCGGACCGGCACTTCTCCCGGAGGCACGGGCGGCGGGACCACAAC
TGGCAGTGGGACATGATGAAGAGCCCGTGGTCGCTGGGGCTGATGCGGAA
GGGCAGGCTCGCCCTGGGGGTTCCGGAGGCGGAGGCAGACGAGTTCGAGG
AGGCCGGGATCATCGCGTTCCCGGGCCACGTGGTGAGGCACAAGGACTCG
GTGAAGAACGGCGGGTACGGGAAGACGATCGGGACGCTGGTGCTGAGGTC
CCCGGAGTCGGCGTTCGTGTGCGTGCAGGTGCAGGGCGAGCGCCTGGGGC
AGGCCGTCGCGGCGGCCGAGGAACTCGGCGTGGAGCTGCCCCCCAGGTTC
GAGCAGAAGGGGCGGTTCAAGTTCGCCATCAACGAGTTGGACGCCTGGGC
GATGGTAGGCGGCGCGGCGAGGAACGACGCGGAGCACGCCGTGGTGTGCG
GGAGGAAGGCCATCCCGAAGGGGGAGCCCGGGGAAGGCTTCGTCCGGGTG
GCGTTCAACATGAGGTGGGGGTGGCAGGACGACCCGAGGGTGTAAGTGCA
GGGCGAGCGCCTGGGGCAGGCCGTCGCGGCGGCCGAGGAACTCGGCGTGG
AGCTGCCCCCCAGGTTCGAGCAGAAGGGGCGGTTCAAGTTCGCCATCAAC
GAGTTGGACGCCTGGGCGATGGTAGGCGGCGCGGCGAGGAACGACGCGGA
GCACGCCGTGGTGTGCGGGAGGAAGGCCATCCCGAAGGGGGAGCCCGGGG
AAGGCTTCGTCCGGGTGGCGTTCAACATGAGGTGGGGGTGGCAGGACGAC
CCGAGGGTGTAA
back to top