mRNA_L-elsbetiae_contig12625.2117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12625.2117.1
Unique NamemRNA_L-elsbetiae_contig12625.2117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12625.2117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12625contigL-elsbetiae_contig12625:2841..3631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size793
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.5997176-CDS-L-elsbetiae_contig12625:2840..32781622815453.5997176-CDS-L-elsbetiae_contig12625:2840..3278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 2841..3278 +
1691682905.4755452-CDS-L-elsbetiae_contig12625:2840..32781691682905.4755452-CDS-L-elsbetiae_contig12625:2840..3278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12625 2841..3278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.6124527-UTR-L-elsbetiae_contig12625:3278..36311622815453.6124527-UTR-L-elsbetiae_contig12625:3278..3631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12625 3279..3631 +
1691682905.4868877-UTR-L-elsbetiae_contig12625:3278..36311691682905.4868877-UTR-L-elsbetiae_contig12625:3278..3631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12625 3279..3631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12625.2117.1prot_L-elsbetiae_contig12625.2117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12625 2841..3278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12625.2117.1

>prot_L-elsbetiae_contig12625.2117.1 ID=prot_L-elsbetiae_contig12625.2117.1|Name=mRNA_L-elsbetiae_contig12625.2117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
AIFLRHCSYSRANLQTPRVRVSHARSHTEPLYARLPAHLHLKNERASQKL
ICFSSTDFGQPPFICHMPRAVISAPVPHTVQSSKYVTRAPRGHLHGPRDS
LRFLFHKQSWFHHLSSREVWPRYLEFLRTMASSASFPPPTPSDSV*
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mRNA from alignment at L-elsbetiae_contig12625:2841..3631+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12625.2117.1 ID=mRNA_L-elsbetiae_contig12625.2117.1|Name=mRNA_L-elsbetiae_contig12625.2117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=791bp|location=Sequence derived from alignment at L-elsbetiae_contig12625:2841..3631+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATCTTTCTCCGACACTGTTCCTATTCGCGCGCGAATCTACAAACGCC
GCGTGTGCGTGTATCACATGCACGATCACACACGGAACCCTTGTACGCCC
GCCTCCCCGCACACTTACACCTAAAGAACGAAAGAGCAAGCCAGAAGCTG
ATTTGTTTTTCAAGCACCGATTTTGGGCAACCGCCCTTCATTTGCCATAT
GCCGCGCGCCGTCATTTCCGCACCCGTGCCGCACACCGTCCAGTCAAGCA
AATACGTAACGCGAGCCCCGCGTGGTCATCTTCACGGTCCGCGTGACAGC
CTGCGCTTCCTGTTTCACAAGCAGTCATGGTTTCATCATCTATCCAGCAG
GGAGGTTTGGCCAAGGTACTTGGAGTTCCTCCGCACAATGGCGTCGTCCG
CTTCCTTTCCACCTCCCACGCCATCCGATTCGGTTTAAAAAGAAAACGCC
GGCAGCAAGCAAGGAAGCAGGACCATTGCATAGCCGACCCACAACCTGGC
GAACCTCGAGTGAGCCAGTCTCTCTCGCTGTCTCTCTCTCTCTGCTCTCC
TCCCCTCCCTCATCCCCTCCGCTGCTCCCTCCGCAGCAGCCGTACCAGTT
GATTGAGCCTATGCACGTGCCCTCTCACCCAGTTCGCACGACCCGTGCGC
GCACGACACGCACCGCCCACCGCACGCCTGTCGATCGCGCGTCCCACCGC
CATCACCACCAGCATGCGCCCACATCGCTGAAGCACATATCATCATCACC
CCCACCCCATGTCTGCTGCGCGCCTCGTCTCCATCTCTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12625:2841..3631+

>mRNA_L-elsbetiae_contig12625.2117.1 ID=mRNA_L-elsbetiae_contig12625.2117.1|Name=mRNA_L-elsbetiae_contig12625.2117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig12625:2841..3631+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATCTTTCTCCGACACTGTTCCTATTCGCGCGCGAATCTACAAACGCC
GCGTGTGCGTGTATCACATGCACGATCACACACGGAACCCTTGTACGCCC
GCCTCCCCGCACACTTACACCTAAAGAACGAAAGAGCAAGCCAGAAGCTG
ATTTGTTTTTCAAGCACCGATTTTGGGCAACCGCCCTTCATTTGCCATAT
GCCGCGCGCCGTCATTTCCGCACCCGTGCCGCACACCGTCCAGTCAAGCA
AATACGTAACGCGAGCCCCGCGTGGTCATCTTCACGGTCCGCGTGACAGC
CTGCGCTTCCTGTTTCACAAGCAGTCATGGTTTCATCATCTATCCAGCAG
GGAGGTTTGGCCAAGGTACTTGGAGTTCCTCCGCACAATGGCGTCGTCCG
CTTCCTTTCCACCTCCCACGCCATCCGATTCGGTTTAAGCCATCTTTCTC
CGACACTGTTCCTATTCGCGCGCGAATCTACAAACGCCGCGTGTGCGTGT
ATCACATGCACGATCACACACGGAACCCTTGTACGCCCGCCTCCCCGCAC
ACTTACACCTAAAGAACGAAAGAGCAAGCCAGAAGCTGATTTGTTTTTCA
AGCACCGATTTTGGGCAACCGCCCTTCATTTGCCATATGCCGCGCGCCGT
CATTTCCGCACCCGTGCCGCACACCGTCCAGTCAAGCAAATACGTAACGC
GAGCCCCGCGTGGTCATCTTCACGGTCCGCGTGACAGCCTGCGCTTCCTG
TTTCACAAGCAGTCATGGTTTCATCATCTATCCAGCAGGGAGGTTTGGCC
AAGGTACTTGGAGTTCCTCCGCACAATGGCGTCGTCCGCTTCCTTTCCAC
CTCCCACGCCATCCGATTCGGTTTAA
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