mRNA_L-elsbetiae_contig1262.2115.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1262.2115.1
Unique NamemRNA_L-elsbetiae_contig1262.2115.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1262.2115.1 vs. uniprot
Match: A0A6H5K6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 6.840e-45
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:  214 LAPYARIEAETASDEGLERLLHSPRRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKLKRRVEATVFLRRLEHYDRNPPHLAASLRG 501
            LAPYARIE ET  DEGLE LLH+ RRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLK +RR EA VFLRRL HYDRNPPHLAASL+ 
Sbjct:  885 LAPYARIEEETVDDEGLEELLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKQRRRREANVFLRRLVHYDRNPPHLAASLQA 980
[Close]
BLAST of mRNA_L-elsbetiae_contig1262.2115.1 vs. uniprot
Match: D8LDD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD7_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.770e-42
Identity = 99/144 (68.75%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:   64 SPLPPAATRASPRRGPGLGAPSAXXXXXXXXXXXXXXXXXXXXXXXXXDPLAPYARIEAETASDEGLERLLHSPRRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKLKRRVEATVFLRRLEHYDRNPPHLAASL 495
            S  P A TRASPRR P  G  S+              XXXXXXXXXXX         E ET  DEGLE LLH+ RRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLL+LLK +RR EA VFLRRL HYDRNPPHLAASL
Sbjct:   78 SSRPRAGTRASPRRSPRRG--SSAVTPRRGGGPTLGPXXXXXXXXXXXXRRFGSGTAEEETVDDEGLEGLLHTARRDGFLDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLVLLKQRRRREANVFLRRLAHYDRNPPHLAASL 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1262.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6L5_9PHAE6.840e-4586.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD7_ECTSI2.770e-4268.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1262contigL-elsbetiae_contig1262:18180..19323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001640.1
Exons2
Model size503
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.457103-CDS-L-elsbetiae_contig1262:18180..183011622815453.457103-CDS-L-elsbetiae_contig1262:18180..18301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 18181..18301 -
1691682905.4146268-CDS-L-elsbetiae_contig1262:18180..183011691682905.4146268-CDS-L-elsbetiae_contig1262:18180..18301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 18181..18301 -
1622815453.4701262-CDS-L-elsbetiae_contig1262:18943..193231622815453.4701262-CDS-L-elsbetiae_contig1262:18943..19323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 18944..19323 -
1691682905.4240475-CDS-L-elsbetiae_contig1262:18943..193231691682905.4240475-CDS-L-elsbetiae_contig1262:18943..19323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 18944..19323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1262.2115.1prot_L-elsbetiae_contig1262.2115.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1262 18181..19323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1262.2115.1

>prot_L-elsbetiae_contig1262.2115.1 ID=prot_L-elsbetiae_contig1262.2115.1|Name=mRNA_L-elsbetiae_contig1262.2115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
KRPRVKLKRERGGAGGGGGGRSPLPPAATRASPRRGPGLGAPSAAAAAAG
HRSGDGAGGNSGGGGGGDDDPLAPYARIEAETASDEGLERLLHSPRRDGF
LDLRRYRKPGWPRPLRITRLEASHGKRFEEHLLLLLKLKRRVEATVFLRR
LEHYDRNPPHLAASLRG
back to top

mRNA from alignment at L-elsbetiae_contig1262:18180..19323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1262.2115.1 ID=mRNA_L-elsbetiae_contig1262.2115.1|Name=mRNA_L-elsbetiae_contig1262.2115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1144bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:18180..19323- (Laminarionema elsbetiae ELsaHSoW15)
AAAAGGCCTCGAGTGAAGCTCAAACGCGAGCGCGGGGGTGCCGGCGGCGG
CGGCGGCGGCCGGTCACCGTTGCCGCCCGCCGCCACCCGTGCCTCTCCTC
GCCGAGGGCCGGGCTTGGGAGCACCGTCGGCGGCGGCGGCGGCGGCGGGA
CATCGATCAGGCGACGGCGCGGGGGGGAATAGCGGCGGCGGCGGCGGCGG
CGACGATGATCCGCTCGCGCCTTACGCGCGCATCGAGGCGGAGACAGCGA
GCGACGAGGGCCTGGAGAGGCTGCTGCACTCCCCGAGGCGGGATGGGTTC
CTCGATCTCCGGAGATACAGGAAGCCAGGGTGGCCGCGGCCGCTGAGGAT
AACGAGGCTGGAGGCCAGCCACGGGAAGAGGTGAGGAGCGAGCGTGTGTA
CTGGTCGTTTTTTTTTTTTTTTATGGCCCTTTAGTGTGTGCTTGTTTTGT
AATACGTGACCAAGTAATTCGGTTGATTTGCCTGGCCTGAGTAGTCTCAT
CTCTGTTTTGTAACACATGCGTGACCAAGTCATCCGATTTGCCTGTTGGA
TATGGAAGTAGGGCGAACCCTAACCTTTATGGCTGAGGGGGTATTCGCAC
GAGAAGTTCCAAGCAAGTTGGAGACCTAAATAGAAACATCCCGTACGTAG
GTGACATGATACGATATATCATACCCCCGGACCGACTTTTAGAGCTCCGT
TTCTCCGTAACGAAGAGGGTGCCAGCACCGAACGAAACATTTTCGGACAG
CCCCTCGACTAGGTGATATTTCCAACGCCACCTCTTTTCGGCACTGGCAC
TGTTCTTCTTGCTGGAGAGGAATGGAGCTCCTGAAAATCTGTCCAGGGGG
TGTGGTATCTTGTGTCACCTATGTAAATACGGTGGTATATATGTATGTAC
AGGTCTCCTTATTTTTGTTCCTGAGCTGAAAAGTAGGCACGCACACCCGT
CCAACCACCGCCCCCCCCCCCCGCTCTCACCGCTGTCACCGCTCTCCGCT
TTCTCATCACGCCCGCCTCAAGGTTCGAGGAACACCTGCTCCTCCTGCTG
AAGCTGAAGCGGAGGGTCGAGGCCACCGTCTTCCTCCGGCGGCTGGAGCA
CTACGACCGCAACCCCCCGCACCTCGCCGCCTCGCTTCGGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1262:18180..19323-

>mRNA_L-elsbetiae_contig1262.2115.1 ID=mRNA_L-elsbetiae_contig1262.2115.1|Name=mRNA_L-elsbetiae_contig1262.2115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:18180..19323- (Laminarionema elsbetiae ELsaHSoW15)
AAAAGGCCTCGAGTGAAGCTCAAACGCGAGCGCGGGGGTGCCGGCGGCGG
CGGCGGCGGCCGGTCACCGTTGCCGCCCGCCGCCACCCGTGCCTCTCCTC
GCCGAGGGCCGGGCTTGGGAGCACCGTCGGCGGCGGCGGCGGCGGCGGGA
CATCGATCAGGCGACGGCGCGGGGGGGAATAGCGGCGGCGGCGGCGGCGG
CGACGATGATCCGCTCGCGCCTTACGCGCGCATCGAGGCGGAGACAGCGA
GCGACGAGGGCCTGGAGAGGCTGCTGCACTCCCCGAGGCGGGATGGGTTC
CTCGATCTCCGGAGATACAGGAAGCCAGGGTGGCCGCGGCCGCTGAGGAT
AACGAGGCTGGAGGCCAGCCACGGGAAGAGAAAAGGCCTCGAGTGAAGCT
CAAACGCGAGCGCGGGGGTGCCGGCGGCGGCGGCGGCGGCCGGTCACCGT
TGCCGCCCGCCGCCACCCGTGCCTCTCCTCGCCGAGGGCCGGGCTTGGGA
GCACCGTCGGCGGCGGCGGCGGCGGCGGGACATCGATCAGGCGACGGCGC
GGGGGGGAATAGCGGCGGCGGCGGCGGCGGCGACGATGATCCGCTCGCGC
CTTACGCGCGCATCGAGGCGGAGACAGCGAGCGACGAGGGCCTGGAGAGG
CTGCTGCACTCCCCGAGGCGGGATGGGTTCCTCGATCTCCGGAGATACAG
GAAGCCAGGGTGGCCGCGGCCGCTGAGGATAACGAGGCTGGAGGCCAGCC
ACGGGAAGAGGTTCGAGGAACACCTGCTCCTCCTGCTGAAGCTGAAGCGG
AGGGTCGAGGCCACCGTCTTCCTCCGGCGGCTGGAGCACTACGACCGCAA
CCCCCCGCACCTCGCCGCCTCGCTTCGGGGGGTTCGAGGAACACCTGCTC
CTCCTGCTGAAGCTGAAGCGGAGGGTCGAGGCCACCGTCTTCCTCCGGCG
GCTGGAGCACTACGACCGCAACCCCCCGCACCTCGCCGCCTCGCTTCGGG
GG
back to top