mRNA_L-elsbetiae_contig1262.2114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1262.2114.1
Unique NamemRNA_L-elsbetiae_contig1262.2114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A6H5K8W7_9PHAE (EGF-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8W7_9PHAE)

HSP 1 Score: 711 bits (1834), Expect = 2.090e-254
Identity = 347/463 (74.95%), Postives = 384/463 (82.94%), Query Frame = 1
Query:   73 RW-MLPATL-GVVFSLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDGAG--TGAAVTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            RW +LPATL GV+ SLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAW+D P  SG+HH YAECANKGTCDRTTGEC+CFEGYEGKGCARMSCPNDCSGHGRC+FAD++P+GVN GSF++DQ+ ++D LGELGDTNGNDAVTF YHGWD GKTRMC CDPG+EG+DCSYRSCP+GNDVMVERLNR  SVKYQKQAICLYS+G AFSG     W+Y  ++            A S++FTGQTFALTFTS+ EERFTTIPI+LDG G  T   VTA YIKSALEGLPNGVID+V+VDVAY+  G S+  G+ +E  P       CD ++VVTFDG QVQGNQHLLEVEW+PC DGCTP LDGLPLSTIDT  D    N P      YT  +H SYVQQIQ+ADYES+VCGGRGKCDYTTGECACFTGYYGLHCETQTALI
Sbjct:    4 RWTLLPATLFGVLVSLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWSDFPDDSGAHHTYAECANKGTCDRTTGECVCFEGYEGKGCARMSCPNDCSGHGRCMFADDLPYGVNLGSFYHDQNNNTDHLGELGDTNGNDAVTFEYHGWDEGKTRMCRCDPGYEGVDCSYRSCPQGNDVMVERLNRVASVKYQKQAICLYSSGTAFSGTEFWSWDYNANNPIVQR-----YSALSLNFTGQTFALTFTSAKEERFTTIPINLDGDGYTTMPYVTADYIKSALEGLPNGVIDSVQVDVAYNATG-SVIAGEVIEEYP-------CDELIVVTFDGAQVQGNQHLLEVEWRPCGDGCTPKLDGLPLSTIDTQFD----NLP------YTIGAHRSYVQQIQSADYESYVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 443          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A835ZF98_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF98_9STRA)

HSP 1 Score: 375 bits (963), Expect = 2.360e-119
Identity = 214/447 (47.87%), Postives = 258/447 (57.72%), Query Frame = 1
Query:  133 AEAGCCPNACSGHGTCTV--DDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCP-----NDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDGAGTGAAVTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFE--VDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTAL 1446
            A  GCCPNACSGHG+C+     AC CY NWQ+GE   E GDC++RTCPYEIAW DAP   G HH YAECANKG CDRT+GEC CF GYEGK C RMSCP     NDCSGHGRCLFA++VP+GVN GS     D        LGD+NGNDA TFTY+ WD+ +TR+C CD  +EG+DC  RSCPKG+DVM       ++   Q Q+I L    +A  G+A      T +  AA      + DA         FALTFT+   ER TT PI++D  G  A   A  +K+ALE LP GVID V V         +     ++  +P    V D    V + V F G  VQG Q+LLEVEWK C +GCTP L G+  S +   N             GY     + Y+         ++ CGGRGKCDYT+GEC CF G+ GL C  QTAL
Sbjct:   23 AAGGCCPNACSGHGSCSAGASAACYCYPNWQSGEMAGEAGDCAERTCPYEIAWADAPGSGGEHHQYAECANKGICDRTSGECNCFAGYEGKACGRMSCPMDKDGNDCSGHGRCLFANDVPYGVNVGSATQLLDT------FLGDSNGNDAETFTYYNWDNERTRLCVCDAEWEGVDCGKRSCPKGDDVM-------DTNGDQVQSILL----IADPGSA------TANFLAAD----GVSDAE--------FALTFTTLTGERLTTGPITID-LGAAATTLATDVKTALEALPGGVIDTVDVVATLGMPTWNANTYWTLSGSPLAPTVTDLNAGVGIYVKFSGKNVQGKQNLLEVEWKECLEGCTPRLAGIQESALALTN------ARTTGSYGYARVIDTKYLSSTATHVNTAYTCGGRGKCDYTSGECQCFDGFVGLACGEQTAL 427          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A7S3JQM4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQM4_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.650e-105
Identity = 194/467 (41.54%), Postives = 255/467 (54.60%), Query Frame = 1
Query:  112 LSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVD-------FTGQTFALTFTSSNEERFTTIPISL---DGAGTGAAVT--AGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVV------VVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPG---YTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            L V +P +    CPN+CSGHGTC  DD C CY+NW  G++  E GDCSDR CPY+IAW  A  + G+ H YAECA  G CDRT GEC CFEG+ GKGC  M+CPNDCSGHG C + ++  +GV  G +++        +  L     + AV      W +GK R+C CD G+  +DCS R CPKGNDV+ ERLN   ++KYQKQ   L +AG    G  + +         A++   N+ +   +D       F G++FAL FTS   + +TTIP+ L   DGA     +   A  +++ALE LPN VID+V V+        + T   +    P +    +  +         V F GT V G Q+LLEV    C DGCTPML+        ++N     N  + D+ G   Y      S+V +   ADY SF CG RGKCDY+TG C CF GY G  C+TQTALI
Sbjct:    5 LLVLVPGSVLAACPNSCSGHGTCGSDDTCTCYANWLMGDQ--EGGDCSDRACPYQIAWATATNKGGNVHTYAECAGVGICDRTKGECDCFEGFTGKGCGVMTCPNDCSGHGTCEYLEDYGYGVVWGDYYDGS------IATLTGLGTDAAVIPQPPDWATGKMRICRCDAGYTDLDCSRRMCPKGNDVLDERLNLVTALKYQKQNFTLVAAGAKGDGIVYDD---------ANNVVCNLENDPDIDRPGCWQDFVGRSFALKFTSKLNQSYTTIPLVLNVSDGAKINTEMNNFATVVENALESLPNYVIDDVDVECDLIYLQANTTAYRTKTFQPVDGTGSIYSLAAYPSLTCTVEFIGTTVMGPQNLLEVVADTCGDGCTPMLNN-------SVNLKTATNITVEDYIGTKDYITDDLFSFVAEDVRADYNSFECGRRGKCDYSTGLCECFEGYTGDRCQTQTALI 447          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: F0YDW6_AURAN (EGF-like domain-containing protein n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDW6_AURAN)

HSP 1 Score: 321 bits (823), Expect = 4.210e-102
Identity = 187/452 (41.37%), Postives = 245/452 (54.20%), Query Frame = 1
Query:  103 VFSLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYH-GWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDGAGTG--AAVTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            + SL++ L  A A C PN+CSGHGTC  DD C CY +W  G++  E GDCSDR CPY++AW+ +P R G+ H YAECA  G CDR+TG+C CFEGY GKGC   +CPNDCSGHG C +A++ PFG   G ++  +      LG        D VT      WDSGK ++C C+PG+  IDCS R CPKGNDV+ ERLN +N+      +I        F+G     W+                     DF  ++FALTFTS   + +TT P+ L+       +   +G ++ AL  LPN VID+V VD +     Q++T   S+             +  +V F G  V G Q+LLEVE   C DGCTP L+          N G+  + P             S+V++   ADY S+ CG RGKCDY+TGEC CF GY G  C+ QTALI
Sbjct:    3 LLSLALALGLAAASC-PNSCSGHGTCGSDDTCTCYQDWVMGDQ--EGGDCSDRKCPYQVAWSASPDRDGNIHTYAECAGVGICDRSTGDCECFEGYTGKGCGIQTCPNDCSGHGACTYAEDAPFGTVWGDYYTAKSNSLTGLGT-------DPVTLAQAPAWDSGKVKLCVCEPGYTDIDCSRRMCPKGNDVLDERLNLSNNWARGATSIA------GFNGQNSDNWD----------------PDCFKDFLNKSFALTFTSKMNQSYTTKPLVLNETNVFNISKAFSGDVRKALVELPNYVIDDVDVDCSLQYVHQNLT---SLYPA----------LSCLVAFTGDTVMGPQYLLEVETDECLDGCTPKLE----------NPGNVTSMPDI----------FSFVKEQVTADYNSYECGRRGKCDYSTGECECFEGYMGDRCQMQTALI 389          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A8J2SH41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH41_9STRA)

HSP 1 Score: 319 bits (818), Expect = 1.210e-98
Identity = 212/559 (37.92%), Postives = 267/559 (47.76%), Query Frame = 1
Query:  112 LSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYH-GWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNI------IDASSVDFTGQTFALTFTSSNEERFTTIPI----------SLDGAGTGAA--VTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPML--------------DGLPL------------------------------STIDTMNDGHDIN---------------------------TPLADHPGYTETSHS-----------------------SYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            L++   +A A C PN+CSGHGTC  DD C CY +W  G++  + GDCSDR CPY++AW+  P ++G+ H YAECA  G CDR +G+C CFEGY G+GC   +CPNDCSGHG C++A++V FG  +G +  + D  S  LG +G      AV       WDSGK RMC CDPG+  IDCS R CPKGNDVM ERL+   ++KY +Q + L  AG    G A     Y    A   ++Q          DA   D  G++FALTFTS   + +TT PI          S D     AA   TA  +K AL  LPN VID+  VD  Y+D     T G         V      V   V F G+ V G Q+LLEVE   C  GCTP L              +G P                               +T   + DG DI                            T +  H G T  +H+                       S+V + +AADY SF CG RGKCDY++GEC CF GY G  C+TQTALI
Sbjct:   75 LALAATTAHAAC-PNSCSGHGTCGADDTCTCYQDWVMGDQ--DGGDCSDRRCPYQVAWSAGPDKTGNIHTYAECAGVGICDRGSGDCECFEGYTGRGCGLQTCPNDCSGHGECVYAEDVTFGTVYGDY--NVDAPSGGLG-VG------AVKIPQKPNWDSGKVRMCVCDPGYTDIDCSRRMCPKGNDVMDERLDLVTALKYHRQYLVLIGAGALGDGVA-----YDDAGAECQTSQIKFQSTQPTSDACFADLVGRSFALTFTSQLNQSYTTRPIVIAKISDQTGSTDTEKRDAAQTATAAAVKDALRELPNYVIDDCEVDCWYED-----TSG---------VGAHYPSVKCEVEFTGSSVAGPQYLLEVEADKCDSGCTPQLSNPVRLKSALRPSTEGNPTCPYPPYECGTAFWGKSGTYGIVGTAGIDDSATTLPVTDGADIGVDATGLDKYIMVGSEVMQLTAIAGTSLTVVRGHDGTTAAAHAGGDIVYLLSGTTKGSQGPHPDVLSHVAEEEAADYNSFECGRRGKCDYSSGECECFEGYMGDRCQTQTALI 602          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A8J2X3H4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3H4_9STRA)

HSP 1 Score: 307 bits (787), Expect = 4.390e-95
Identity = 199/535 (37.20%), Postives = 254/535 (47.48%), Query Frame = 1
Query:  112 LSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDG--AGTGAA----VTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLD---------------------------------------------------------------------GLPLSTID----------TMNDGHDINTPLADHPGYTETSHSS----YVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            L++   +A A C PN+CSGHGTC  DD C CY +W  G++  + GDCSDR CPY++AW+  P ++G+ H YAECA  G CDR +G+C CFEGY G+GC   +C NDCSGHG C++A++V FG  +G +    D + D +   G   G   V    + WDSGK RMC C+PG+  IDCS R CPKGNDVM ERL+   S+KYQ Q + L  AG    G+        GD+  A +      DA   D  G++FALTFTS   + +TT PI + G  A T  A     T   +++AL  LPN V+D   V   Y     +   G S        D         + F+G  V G Q+LLEVE   C  GCTP L                                                                      G P   +D          TM DG ++     D  G      SS     V +   ADY SF CG RGKCDY++GEC CF GY G  C+TQTALI
Sbjct:    6 LALAATTAHAAC-PNSCSGHGTCGADDTCTCYQDWVMGDQ--DGGDCSDRRCPYQVAWSAGPDKTGNIHTYAECAGVGICDRGSGDCECFEGYTGRGCGLQTCQNDCSGHGECVYAEDVTFGTVYGDYAGVPDANGDIVAS-GVGVGASKVPQKPN-WDSGKVRMCVCEPGYTDIDCSRRMCPKGNDVMDERLDLTTSLKYQTQTVTLIGAGAL--GDGKVSVSGCGDTTDAAAT-----DACFGDLVGKSFALTFTSKLNQSYTTKPIIVAGITANTDVAGAQVATQDAVQAALHELPNYVVDGCTVTCTY-----AYKIGVSALYPSVSCD---------IGFNGGSVAGPQYLLEVEADKCDSGCTPQLSSPVQLKSALVASTAPGFVKASVATTISHATPGSTYADTIVSIDVADGTGIADDDHILIGSEILKVTDASGAPTLAVDRAQQSTTAPATMADGSEVFLLATDSAGALVPDASSDILSSVSESTKADYNSFECGRRGKCDYSSGECECFEGYMGDRCQTQTALI 514          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A7S0L985_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L985_9EUKA)

HSP 1 Score: 303 bits (775), Expect = 4.620e-95
Identity = 181/457 (39.61%), Postives = 231/457 (50.55%), Query Frame = 1
Query:  103 VFSLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISL--DGAGTGAAVTAGY------IKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            + +L+ F+ + +A C  NACSGHG C     C C+ NW  G     +GDCS+R CP+E+AW D P   G+HH YAEC+NKG C+R +GEC CF GYEGKGC R SCPNDCSGHGRC + +++PFG     + N       FL +       D  TF Y+GWDS KTR C CDP +  +DCS R C  GNDVM +R +  +  +YQ Q +                  +  D +   + Q             +TFALTF S   E FTT+PI+   D  GTG   T G       I++ALE LPN VIDNV V    D                         + V +TF G  VQG Q+LL V    C DGC+P L GL L  ++T                         + ++  AD+ S+ CG RGKCDYTTG+C CF GY GL C T   L+
Sbjct:    5 IIALASFVAAVQAAC-DNACSGHGKCGAKGICDCFDNWGIGLGHL-SGDCSERICPFELAWVDTPDSVGNHHRYAECSNKGICNRGSGECECFPGYEGKGCQRTSCPNDCSGHGRCKYIEDMPFGQVQADYQNAVTGIDSFLPQ-------DPHTFPYYGWDSYKTRGCECDPEYGDVDCSKRLCQHGNDVMDQRDDLLDPHQYQVQKL-----------------NFLADQSYLENYQNR----------DRTFALTFKSKLNETFTTLPINFYSDTGGTGG--TDGLHEFVLDIENALERLPNRVIDNVEVHAGVDATNH---------------------IHVNITFVGDNVQGPQNLLTVRSYLCGDGCSPKLVGLELE-LETQT-----------------------ITELTPADFNSYECGRRGKCDYTTGQCQCFAGYTGLSCSTIACLV 378          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: K0R988_THAOC (EGF-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R988_THAOC)

HSP 1 Score: 301 bits (770), Expect = 3.890e-94
Identity = 186/459 (40.52%), Postives = 244/459 (53.16%), Query Frame = 1
Query:   91 TLGVVFSLSVFLPS---AEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVM-VERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDAS--SVDFTGQTFALTFTSSNEERFTTIPISLDGAGTGAAVTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            TL ++ S  V L S     AGC PN CSGHGTC +D+ C CY  W  G +    GDCSDR CP+E+AW D P R G  H+YAECANKG C+R +GEC+C+ GYEGKGC R SCP  CSGHG C +  ++ FG+ H  ++   D  +D L  LG        TF  H +DS ++RMC CD G++G+ C  R CP GND+M V      NS+            G+   GN + + +              + DA+  + +F GQTFA+ FTS   E F T PI+ D   T  AV AGYI+SAL  LPNGVID+V V V  +D+                       V++ VTF G  VQG QH LE+    C  GC+P + G  L+ + T +D     T L+           S+VQ      + SF CG RGKC+   GEC+CF G+ G  C + +AL+
Sbjct:    3 TLALLTSGLVVLTSLVGTRAGC-PNGCSGHGTCGIDEVCQCYPGW--GTDGHAGGDCSDRFCPFELAWVDNPTREGDRHSYAECANKGECNRKSGECVCYAGYEGKGCGRQSCPGQCSGHGTCEYVKDLSFGIVHNEYY---DGSTDALSGLGIG----GRTFQDHSFDSDRSRMCVCDAGWDGLACQTRMCPYGNDIMDVIPGFDENSL-----------LGMPGYGNEYAQVQTV-----------TLFDANLDNSNFDGQTFAVKFTSKLNETFVTQPIAWD---TTDAVLAGYIESALLKLPNGVIDDVAVTVDSNDNNSG--------------------VILDVTFTGESVQGKQHKLEILADKCEVGCSPRITG--LANLRTFSD-----TALSQT--------LSHVQISTPGSHNSFECGRRGKCNRKNGECSCFEGFTGSACGSLSALV 391          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: A0A6U3PT88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3PT88_9STRA)

HSP 1 Score: 304 bits (778), Expect = 8.090e-94
Identity = 197/511 (38.55%), Postives = 255/511 (49.90%), Query Frame = 1
Query:  118 VFLPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAF--------------------SGNA--HHEWEYTG----DSAAAHSAQWNIIDASSVDFT-----GQTFALTFTSSNEERFTTIPISLDGAGTGAAVTAGYIKSALEGLPNGVIDNVRVDV-------------AYDD------DGQSITGG----DSMENTP-----FEVDDELCD--------VVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 1449
            +FL +A+A C PN CSGHGTC  DD C CY NW  G+E   +GDCSDR CPYEIA+ D P  SG  H Y EC+ KG CDR TGEC CF+GY GKGC R SCPNDCSGHG C + +++  GV  G ++    K    L +   T  N  ++     WD  K+  C CDP +  +DCS R CPK NDVM ER+N  ++   Q Q I L+ AG                       SGN    ++ +YT     D    H     I + S  D+      G+ FALTFTS+  E FTT PI L       ++ +  I+ AL+ LPN VI +V V                YD       DG   TG     D++ +T      +E + ++ D        + + VTF G   +G Q+LL +E K C DGCTP L+G+ L      N G                    ++ +   AD+ ++ CG RGKCDY TGEC CF GY G  C TQTAL+
Sbjct:   30 LFLGTAQAAC-PNQCSGHGTCGSDDVCTCYQNWGMGDE--ASGDCSDRVCPYEIAFVDTPDASGKFHKYMECSGKGLCDRITGECDCFDGYTGKGCQRQSCPNDCSGHGTCEYIEDLTHGVVPGQYWGFTSKQGG-LYKTAKTFENTILSV----WDYHKSMACVCDPRYIDVDCSRRMCPKSNDVMDERMNTEDTPLQQTQRIVLFDAGNVHYANISTLEYTNLTGTGVTDASGNVLKGYDEDYTDNTGYDDVGVHKFIHGIYNTSQGDYAWYDEAGENFALTFTSTLNESFTTYPIYLHND---PSMLSHQIELALKSLPNRVITDVEVQTKMGYIHMLNYTVEGYDYFGKRSYDGAQYTGEIDVFDTLSSTMDWANWYEKNAKIGDPADPKIHYIEMNVTFSGVP-KGPQNLLTIETKECQDGCTPKLNGIHLIPFGPGNGG--------------------FIVEAVKADFNNYECGRRGKCDYETGECECFEGYTGEACSTQTALV 508          
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Match: C4B7Q7_OCHDN (Tubular mastigoneme protein n=1 Tax=Ochromonas danica TaxID=2986 RepID=C4B7Q7_OCHDN)

HSP 1 Score: 295 bits (754), Expect = 4.400e-92
Identity = 178/433 (41.11%), Postives = 219/433 (50.58%), Query Frame = 1
Query:  148 CPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRTTGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQDKDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCPKGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAHSAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDGAGTGAAVTAGYIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDVVVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDINTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTGYYGLHCETQTAL 1446
            C N CSGHGTC+ DD C CY NW  G    ++GDCSDR CPYE+AW D P  + + H YAECAN+G C+R TGEC CF+GYEGKGC R +CPN CSGHG C + +E+ FG      +ND  K   F+         D  TF YHGWD+ K R C CDP +  +DCS R CP GNDV+ +  + +    YQ Q I + +                           N +         QTFALTF S   E FTT PI  D +     V    ++ AL  LPN VID V V                  N  +  D     + + +TF G  VQG Q+LL VE   CSDGCTP + G+ + T+   N  H                  S + ++ AADY SF CG RGKCDY TG C CFTGY G +C T T L
Sbjct:   20 CDNNCSGHGTCSTDDVCECYDNWGVGLSH-DSGDCSDRICPYELAWVDTPDNTVAFHKYAECANRGICNRETGECQCFDGYEGKGCQRSTCPNACSGHGTCEYIEELAFGET----WNDYSKQY-FI--------EDPKTFPYHGWDNRKIRTCVCDPTYGDVDCSKRLCPYGNDVL-DIQDNSIITNYQIQQIRIKAI--------------------------NQLQG----LRTQTFALTFKSKLNETFTTYPIVFDDSDLNDFVHD--VQLALLKLPNRVIDGVSV----------------AANRDYATDY----LNLNITFTGNNVQGKQNLLVVESYECSDGCTPKITGIDVQTL--YNQKH------------------SNISEVLAADYYSFECGRRGKCDYNTGLCNCFTGYTGDNCNTMTTL 365          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1262.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8W7_9PHAE2.090e-25474.95EGF-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF98_9STRA2.360e-11947.87EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3JQM4_9STRA1.650e-10541.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YDW6_AURAN4.210e-10241.37EGF-like domain-containing protein n=3 Tax=Aureoco... [more]
A0A8J2SH41_9STRA1.210e-9837.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X3H4_9STRA4.390e-9537.20Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0L985_9EUKA4.620e-9539.61Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K0R988_THAOC3.890e-9440.52EGF-like domain-containing protein n=1 Tax=Thalass... [more]
A0A6U3PT88_9STRA8.090e-9438.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
C4B7Q7_OCHDN4.400e-9241.11Tubular mastigoneme protein n=1 Tax=Ochromonas dan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1262contigL-elsbetiae_contig1262:9096..14804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score655.6
Seed ortholog evalue1.7e-185
Seed eggNOG ortholog2880.D8LDD6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSecreted EGF-like domain protein OCM2
Ec32 orthologEc-25_001650.1
Exons5
Model size1579
Cds size1392
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.3523042-UTR-L-elsbetiae_contig1262:9095..92221622815453.3523042-UTR-L-elsbetiae_contig1262:9095..9222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1262 9096..9222 -
1691682905.3461194-UTR-L-elsbetiae_contig1262:9095..92221691682905.3461194-UTR-L-elsbetiae_contig1262:9095..9222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1262 9096..9222 -
1622815453.4201365-UTR-L-elsbetiae_contig1262:14744..148041622815453.4201365-UTR-L-elsbetiae_contig1262:14744..14804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1262 14745..14804 -
1691682905.400391-UTR-L-elsbetiae_contig1262:14744..148041691682905.400391-UTR-L-elsbetiae_contig1262:14744..14804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1262 14745..14804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.3644867-CDS-L-elsbetiae_contig1262:9222..95341622815453.3644867-CDS-L-elsbetiae_contig1262:9222..9534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 9223..9534 -
1691682905.3582876-CDS-L-elsbetiae_contig1262:9222..95341691682905.3582876-CDS-L-elsbetiae_contig1262:9222..9534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 9223..9534 -
1622815453.3752165-CDS-L-elsbetiae_contig1262:10167..105841622815453.3752165-CDS-L-elsbetiae_contig1262:10167..10584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 10168..10584 -
1691682905.36647-CDS-L-elsbetiae_contig1262:10167..105841691682905.36647-CDS-L-elsbetiae_contig1262:10167..10584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 10168..10584 -
1622815453.38714-CDS-L-elsbetiae_contig1262:11840..121941622815453.38714-CDS-L-elsbetiae_contig1262:11840..12194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 11841..12194 -
1691682905.374975-CDS-L-elsbetiae_contig1262:11840..121941691682905.374975-CDS-L-elsbetiae_contig1262:11840..12194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 11841..12194 -
1622815453.3962996-CDS-L-elsbetiae_contig1262:13342..134921622815453.3962996-CDS-L-elsbetiae_contig1262:13342..13492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 13343..13492 -
1691682905.3839164-CDS-L-elsbetiae_contig1262:13342..134921691682905.3839164-CDS-L-elsbetiae_contig1262:13342..13492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 13343..13492 -
1622815453.4110456-CDS-L-elsbetiae_contig1262:14585..147441622815453.4110456-CDS-L-elsbetiae_contig1262:14585..14744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 14586..14744 -
1691682905.3924289-CDS-L-elsbetiae_contig1262:14585..147441691682905.3924289-CDS-L-elsbetiae_contig1262:14585..14744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 14586..14744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1262.2114.1prot_L-elsbetiae_contig1262.2114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1262 9223..14744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1262.2114.1

>prot_L-elsbetiae_contig1262.2114.1 ID=prot_L-elsbetiae_contig1262.2114.1|Name=mRNA_L-elsbetiae_contig1262.2114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=464bp
MAPSRWMLPATLGVVFSLSVFLPSAEAGCCPNACSGHGTCTVDDACVCYS
NWQNGEEFFETGDCSDRTCPYEIAWTDAPARSGSHHAYAECANKGTCDRT
TGECLCFEGYEGKGCARMSCPNDCSGHGRCLFADEVPFGVNHGSFFNDQD
KDSDFLGELGDTNGNDAVTFTYHGWDSGKTRMCHCDPGFEGIDCSYRSCP
KGNDVMVERLNRANSVKYQKQAICLYSAGLAFSGNAHHEWEYTGDSAAAH
SAQWNIIDASSVDFTGQTFALTFTSSNEERFTTIPISLDGAGTGAAVTAG
YIKSALEGLPNGVIDNVRVDVAYDDDGQSITGGDSMENTPFEVDDELCDV
VVVVTFDGTQVQGNQHLLEVEWKPCSDGCTPMLDGLPLSTIDTMNDGHDI
NTPLADHPGYTETSHSSYVQQIQAADYESFVCGGRGKCDYTTGECACFTG
YYGLHCETQTALI*
back to top

mRNA from alignment at L-elsbetiae_contig1262:9096..14804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1262.2114.1 ID=mRNA_L-elsbetiae_contig1262.2114.1|Name=mRNA_L-elsbetiae_contig1262.2114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5709bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:9096..14804- (Laminarionema elsbetiae ELsaHSoW15)
GAGCTGCCGCTAAGCTCGATCCGATTTATCTTGTCTCACGTGGCTGCCGC GACAACCACGATGGCTCCCTCTAGATGGATGCTGCCGGCCACGCTCGGCG TTGTTTTCTCGCTCAGCGTGTTTTTGCCGTCGGCGGAGGCCGGCTGCTGT CCGAACGCATGCTCGGGTCACGGAACCTGCACAGTGGATGACGCCTGCGT TTGCTACAGCAACTGGCAGGTGCGTGGGGAGAGCAGCGAATGAGTGACCT GCTACGGCGTCGATTCGGGTGAAGCCACTCCACACTACCCTCCCACACAT GATTTTGGCCTGCGGAAACGTGAAACCGCGGATTTAGGAGGAAAGCTCGT GGGAGTAAAATCTTGGCGTCCAGGGTGGTACCGGCGTTTCCGCCCCGCAC TGGGCTCAACCCCGCTACAGACATAGATCTATGAAGAGAGGGCTCCTGTG CTGATGTTGGCGGTGTCGCGAGGTTTTTTGGTGTCGGGTTCTTGGAACAT CAATAAATACGGCAGAGTTTGTTGTGCTTGCGTTCCCCGTTATGCTTCTT GGCTTTCGATTATTTTTCCGAGGGCGTGTACAGAAGTGAGCCACATGCAG CATACGCATGTATCTAGATACAAGCCAGCCGCCTTCGGTGTCGGGATACA TACGTGAGCCGACAGACGGTAACTGGCCGGTCGCTTGGCCACTTGCGGTG GTCTTACTTGTTTTTAGCACGTATCCACCACCTACCAAGAGCGTCGGAAT CGAAAGAGTTGAATGCGCCGCTCTCTCTCCCCTCGATGCCATCGGCGTTC GAAATTTAGCTGAATTTTAATTTTTTCGTTGCTCTTGAAACAAGGATGAG TGAGTGGGGTTCAAGGCCACCGGCGATCATACCAGAGTTATTTTTGAACC ACGCGCATTCACCGCGCCTGCCTGTGCCCCTCTTGTTGCTCGCCCCGACG GTAGAAAGGAAAACATGATGCTTGAGTTAACAACATTGTCCGCGCCCTGT TTTTTTTCTCCCGCACGGAAAGCAGAGTTGTGCAGGTGGGTATTGATTTC TTTCGATATTTTTGGGGTATATTTTTGTACCATATGTACATATGTATCTT GGCCGGACCAAAGCTGTCTCGACTACGTCACTTTGTTGTATGGAGCGCAG GCTTCGTCCCACAGAGTCCCGTCTTTAGTGCTGGGAGGTTCCGTTGTTGA TTCATGAATGTATATTAGCGTGTGCTTAGTTCTAGACTACTAGCTACATA GACATATTGCGTATAATGACACCCATCCTTTTCCGATCTATCTACTTGAT TGTGCTGCACAGAACGGCGAGGAGTTTTTCGAGACCGGGGACTGCTCGGA TCGCACTTGCCCGTATGAGATCGCTTGGACCGACGCCCCGGCTAGGTCGG GATCCCACCACGCCTACGCTGAGTGCGCCAACAAGGGAACGTGCGATCGC ACCACTGGCGAGGTAACTAGGATGCGACGCTAAATCCCAATTCAAGCTTG CTTGTGTATGAAGTTTACGTTTATCTACACAGACTACTAGACTACAAGTC TTATGTAGCATATTTACTCTACTGCTGTATCCCGAGGAGAGAGGCGCACG TACCCATAGCTCCGGTGCAGCCAAGGCTCGCTTGAAAGGCGTGCGCCATC CGTATGCACTTGTGTACGTCGATGAGTTTCAAAACGCGATGTATGTGCGT ATTACACTGCCAACAACGTGCTGGCGTTCTCTCCCTTGTTTCTACTCATC ATGGCGAATAGATGTAGAAATACATAGATACACATATAATATCCCCCGTC AAGAAGGCAGAAGCAAAACCTTTCTGCATCGCGAGTTGTCGGCACTGACA ACAATTGCGGTTGATTCTGGATCCCACAAAGACTCTCCTCTCTGGGAGGA AGGACTCCCAGCTGCCCTTCTTGGGGGGCGTTTGCTTTTCGTACATATTT CCGAGTGAGAAATGAGTAGTATCCTGCATGCACAACGCAAGCGTCTGTCT ATTGATAGAGTCCAAGACAACTAACTGGTGTGCGTAAATACGAATGTTCG CTTCTCTTGGACTGCGAAGCCGACGATGACGCTTTCCCGCAGCAACCGCG TTTTGGGTTTTGTGGCCATTGTCTCAGCGTTCGTGTGATGGCGCTGACGT TCCGGCATCTGAAAAAAGGCTTTATAGTAGAGCAACTAGGGGGAGGGGGG GCGATATTTTGACGATTTGACCCCCCCCCCCCTCTCGAATCTCATATTGG CGTTATTTTGACACGCGATTGTTGTCTATATGTATGCACAACATGTCGGC ATATGGGCGCGTACTTCATCGGGTAGAAAACAAAGCTCTTGTATACCTCA CATCACCATCCCCTTCTCCAACGCGCCTTTCCTTTCACGTTAATTCTGAA CCGCGGAACCCCCATCCAACGGCAACGGCAACGGCAACGGCATCACCGCC ACCATCACCACCACCACCAACAACAACAACAACTATTACTACTAACAACG GCTTCGACGACGTCGGTGTCATCCACACCTACCACCACCACCACCGCCAC CGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCACCCCCGCCCATC ATCCCAAAAGTGCCTGTGCTTCGAGGGCTACGAGGGCAAGGGCTGCGCCC GTATGTCCTGTCCCAACGACTGCTCCGGCCACGGCCGCTGCCTCTTCGCC GACGAGGTGCCCTTCGGGGTCAACCACGGGTCCTTCTTCAACGACCAGGA CAAGGACTCGGACTTCCTCGGAGAGCTGGGCGACACCAACGGCAATGACG CGGTCACCTTCACCTACCACGGATGGGACAGCGGCAAGACCCGCATGTGC CACTGCGACCCGGGCTTCGAGGGGATCGACTGCTCCTACCGCTCCTGCCC CAAGGGCAACGACGTCATGGTGGAGAGGCTCAACCGCGCTAACAGCGTCA AGTACCAGAAGCAGGTATGTGCGTGCGCGCGTGCGCGCGTGCGCGTGTAC GTGTGCGTGTGTGTGTGCGTGTGCGTGTGCGCGCCTTGCTTCATGTAGTG GTAAACCGCTGTGGAAATCCTTAGTCTACGCTTCGCTTTCTCTTTGCAAA ACACGTGCCCTTCTTCGGCCTGTTTTTGTTGTAAGCGTGAGCTGGCTTTT TTTTTTGTCTCTGGCGATTGCAGCTTTGTTATCGGGGTATCTCGTTCGCG CGCTGGTTCGAGTCGAAACCAGAAGAAGCAGATTTTAGACAACAATTTTG TCTTGATTGAGCCCGCTTACACTAGCGGGGGGGTTATCACTGTACCTGTG TTGCACCCAGAATCGAAACAGCACACTGGTAGAACGCTCATGACATAGGA ATGTACCAGCATTTATTCACTCCTGCGTTTACTACGGCGACCGACTACCG TACGTCGTTTCTAGGTTTTCTCGGATTCTCGTCCGAGCATTGGTACATAC AAACAAAAATGCGTAGGTAAATTATCCGCCGTAAGAAAAACAAAAAACAG ATTTCTAACTTATCAGATATAGTCTAATCTAAATAAATAGATTTTTGTGT TCACATGAATTCCCAACACCTGTCCGCATTCAGTGTTCCCACACCGCTGT GCCCCTCCTATTATAACTACCCCCCCCCCCCCCCCCCCCCAAAACAAACC CCCCCCCCCTGCGAACGCCTCCCCCCGCCGGGTTTTTTTTGGTTTTTTTT CCCCCCCTCCCCCTCTCTTTTNNNNNNNNNNATAAAAATTTTTTTGGTTT CCCATAACTTCCCCACCCCCCCCCCCCTTCATTTCTCCCCCCCCCCCTGG CCCCCCCCTTTTTTACCCCCCCCCCCCCCCCCCCCCAACACAAAACGAGC ACTTCGCCGTGCAGAACGTTACGCGCCGTAGTGTTTTTTTGGGCTTCTTC CCGACCCTTCCGTCTCTATTTACTGTTTGGTGGCGGGGGGTCCCCACTTC TGTTTGGTGGCGGGGGTCTTCGTCTAAGGCCAGAGTGTAAGATAGTTTGG CCGAATTCCTCCTTATTCAACAGAGAAGAGTGAGAGCGCACGTCAGCTTC CACTCGAGGGCTACGATGCCCCGCACATACCCACATGGCACACGAGACCC CCCACATATCCACGTAACCCCCAAATATCCCACCGATACATGGTACACAG CAGTGGCCTAGAACCACCTTAACGCCTGCATAACAGACCTCCCCGAAAAA CAACCCATCGTGCCGCTCAGGCAATCTGCCTGTACAGCGCCGGGCTCGCC TTCTCTGGCAACGCCCACCACGAATGGGAGTATACGGGCGACAGCGCCGC TGCCCACTCTGCACAGTGGAACATCATTGATGCCAGCTCGGTGGACTTCA CGGGACAGACCTTCGCCCTCACCTTCACCTCCTCCAACGAGGAGCGCTTC ACGACGATTCCGATCAGCCTCGATGGCGCCGGGACGGGGGCCGCCGTGAC GGCGGGGTACATCAAGAGCGCCCTGGAAGGCCTACCCAACGGCGTCATCG ACAACGTCCGCGTGGACGTCGCCTACGACGACGACGGCCAGAGCATCACG GGGGGCGACTCTATGGAAAACACGCCGTTCGAGGTCGACGACGAGCTCTG TGACGTTGTCGTCGTCGTCACCTTCGATGGCACGCAGGTATGTAGGCGGC GGGACGGACGCGCATCTGCGTAGAAACCTTGCTGCTGCCTGCAGCCGAGG GAAATATTCTGTAGTCGTGTGATCGGGTTGTTCTTGATGTCCGGCACTGT TAAATAGTATAGTTCCGGGCTATATAATGCTGTACCCGTTTCATTAAACA TACCAAGGCAAATATAAGGGGAAGACATGAAGGCCAAACAAAGGGAGCTG ACCCCTTGGCGAGCTGCATACATACATGCACGTGTTACTTTCCATCCAGG CGTGTCATCTGAATCAGCGCCTCTCTGTTGGAAAACGATTAGACCGACTA TACCTGAATAAGCAGGGGCTCAGCCGGCGGAATCAAGTCCACGGCAGCAC GATCGCCGCACGGGCCGTCCGTCCATCATCGAAATACGGGGCGTCAGCAG GGCGGCCGCAGAGACGGCTAGAAGAATCGCTCAACCGGAGTCAACTGTCA GGCGACGTTCCTCCTATACTCTTGGGGGCTTCGCGGCCGAAATCAAGACA GACTCTTCCGAGCGCAAGCGAGATAAATGCTACGCACCCACCACCACCAC ATTCCTTTTACCATCCTTCCCGCCTTCACCTCCCCCCCCCCTCTCCGTCG CAATGTGTTTTTGCTTCCAGGTCCAGGGCAACCAGCACCTGTTGGAGGTC GAGTGGAAGCCCTGCAGCGACGGGTGTACCCCCATGCTAGACGGGCTCCC GTTGTCGACCATAGACACCATGAATGACGGCCACGACATTAACACGCCCT TGGCGGATCACCCCGGCTACACCGAGACGTCGCACAGCTCGTACGTGCAG CAGATTCAGGCGGCGGACTACGAGTCCTTCGTCTGCGGTGGCCGCGGGAA GTGCGACTACACCACCGGGGAGTGCGCCTGCTTTACGGGCTACTACGGCC TCCACTGCGAGACGCAGACCGCTCTCATCTGATCGGGTAGTTCCTCGTAG GTCCGATTAGACCCACGGGAAGAGTTTTTAAGACGCAGACCGCTCTCGTC CGGTCTGGTTGTTCTTAAAGGTCCGCTTACACCCACGGGGAGAGTTTTCA AGACCGCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1262:9096..14804-

>mRNA_L-elsbetiae_contig1262.2114.1 ID=mRNA_L-elsbetiae_contig1262.2114.1|Name=mRNA_L-elsbetiae_contig1262.2114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2784bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:9096..14804- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCCTCTAGATGGATGCTGCCGGCCACGCTCGGCGTTGTTTTCTC
GCTCAGCGTGTTTTTGCCGTCGGCGGAGGCCGGCTGCTGTCCGAACGCAT
GCTCGGGTCACGGAACCTGCACAGTGGATGACGCCTGCGTTTGCTACAGC
AACTGGCAGATGGCTCCCTCTAGATGGATGCTGCCGGCCACGCTCGGCGT
TGTTTTCTCGCTCAGCGTGTTTTTGCCGTCGGCGGAGGCCGGCTGCTGTC
CGAACGCATGCTCGGGTCACGGAACCTGCACAGTGGATGACGCCTGCGTT
TGCTACAGCAACTGGCAGAACGGCGAGGAGTTTTTCGAGACCGGGGACTG
CTCGGATCGCACTTGCCCGTATGAGATCGCTTGGACCGACGCCCCGGCTA
GGTCGGGATCCCACCACGCCTACGCTGAGTGCGCCAACAAGGGAACGTGC
GATCGCACCACTGGCGAGAACGGCGAGGAGTTTTTCGAGACCGGGGACTG
CTCGGATCGCACTTGCCCGTATGAGATCGCTTGGACCGACGCCCCGGCTA
GGTCGGGATCCCACCACGCCTACGCTGAGTGCGCCAACAAGGGAACGTGC
GATCGCACCACTGGCGAGTGCCTGTGCTTCGAGGGCTACGAGGGCAAGGG
CTGCGCCCGTATGTCCTGTCCCAACGACTGCTCCGGCCACGGCCGCTGCC
TCTTCGCCGACGAGGTGCCCTTCGGGGTCAACCACGGGTCCTTCTTCAAC
GACCAGGACAAGGACTCGGACTTCCTCGGAGAGCTGGGCGACACCAACGG
CAATGACGCGGTCACCTTCACCTACCACGGATGGGACAGCGGCAAGACCC
GCATGTGCCACTGCGACCCGGGCTTCGAGGGGATCGACTGCTCCTACCGC
TCCTGCCCCAAGGGCAACGACGTCATGGTGGAGAGGCTCAACCGCGCTAA
CAGCGTCAAGTACCAGAAGCAGTGCCTGTGCTTCGAGGGCTACGAGGGCA
AGGGCTGCGCCCGTATGTCCTGTCCCAACGACTGCTCCGGCCACGGCCGC
TGCCTCTTCGCCGACGAGGTGCCCTTCGGGGTCAACCACGGGTCCTTCTT
CAACGACCAGGACAAGGACTCGGACTTCCTCGGAGAGCTGGGCGACACCA
ACGGCAATGACGCGGTCACCTTCACCTACCACGGATGGGACAGCGGCAAG
ACCCGCATGTGCCACTGCGACCCGGGCTTCGAGGGGATCGACTGCTCCTA
CCGCTCCTGCCCCAAGGGCAACGACGTCATGGTGGAGAGGCTCAACCGCG
CTAACAGCGTCAAGTACCAGAAGCAGGCAATCTGCCTGTACAGCGCCGGG
CTCGCCTTCTCTGGCAACGCCCACCACGAATGGGAGTATACGGGCGACAG
CGCCGCTGCCCACTCTGCACAGTGGAACATCATTGATGCCAGCTCGGTGG
ACTTCACGGGACAGACCTTCGCCCTCACCTTCACCTCCTCCAACGAGGAG
CGCTTCACGACGATTCCGATCAGCCTCGATGGCGCCGGGACGGGGGCCGC
CGTGACGGCGGGGTACATCAAGAGCGCCCTGGAAGGCCTACCCAACGGCG
TCATCGACAACGTCCGCGTGGACGTCGCCTACGACGACGACGGCCAGAGC
ATCACGGGGGGCGACTCTATGGAAAACACGCCGTTCGAGGTCGACGACGA
GCTCTGTGACGTTGTCGTCGTCGTCACCTTCGATGGCACGCAGGCAATCT
GCCTGTACAGCGCCGGGCTCGCCTTCTCTGGCAACGCCCACCACGAATGG
GAGTATACGGGCGACAGCGCCGCTGCCCACTCTGCACAGTGGAACATCAT
TGATGCCAGCTCGGTGGACTTCACGGGACAGACCTTCGCCCTCACCTTCA
CCTCCTCCAACGAGGAGCGCTTCACGACGATTCCGATCAGCCTCGATGGC
GCCGGGACGGGGGCCGCCGTGACGGCGGGGTACATCAAGAGCGCCCTGGA
AGGCCTACCCAACGGCGTCATCGACAACGTCCGCGTGGACGTCGCCTACG
ACGACGACGGCCAGAGCATCACGGGGGGCGACTCTATGGAAAACACGCCG
TTCGAGGTCGACGACGAGCTCTGTGACGTTGTCGTCGTCGTCACCTTCGA
TGGCACGCAGGTCCAGGGCAACCAGCACCTGTTGGAGGTCGAGTGGAAGC
CCTGCAGCGACGGGTGTACCCCCATGCTAGACGGGCTCCCGTTGTCGACC
ATAGACACCATGAATGACGGCCACGACATTAACACGCCCTTGGCGGATCA
CCCCGGCTACACCGAGACGTCGCACAGCTCGTACGTGCAGCAGATTCAGG
CGGCGGACTACGAGTCCTTCGTCTGCGGTGGCCGCGGGAAGTGCGACTAC
ACCACCGGGGAGTGCGCCTGCTTTACGGGCTACTACGGCCTCCACTGCGA
GACGCAGACCGCTCTCATCTGAGTCCAGGGCAACCAGCACCTGTTGGAGG
TCGAGTGGAAGCCCTGCAGCGACGGGTGTACCCCCATGCTAGACGGGCTC
CCGTTGTCGACCATAGACACCATGAATGACGGCCACGACATTAACACGCC
CTTGGCGGATCACCCCGGCTACACCGAGACGTCGCACAGCTCGTACGTGC
AGCAGATTCAGGCGGCGGACTACGAGTCCTTCGTCTGCGGTGGCCGCGGG
AAGTGCGACTACACCACCGGGGAGTGCGCCTGCTTTACGGGCTACTACGG
CCTCCACTGCGAGACGCAGACCGCTCTCATCTGA
back to top