mRNA_L-elsbetiae_contig12617.2110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12617.2110.1
Unique NamemRNA_L-elsbetiae_contig12617.2110.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 9.010e-93
Identity = 182/240 (75.83%), Postives = 198/240 (82.50%), Query Frame = 1
Query:  118 QVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDK----TSAXXXXXXXXXXXXXXXXXXXXXXXXXXL-SGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822
            Q LMDLIES RSQWFEVATQFRAIFLSV+  G+GG +A AAR S +SSPR  +G +  G+ RDSGD+LSLWLLRRVSAFVEQLK LLPLVEDGG LRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAA+ QWATA+A+FVVTLRD+AAIEAAGGNGASLLHVPD+    TS               XXXXXXXXX   L  G+GG+P PPRSLMAFPPVARLLN+VLTSFNQLRE
Sbjct:  316 QALMDLIESCRSQWFEVATQFRAIFLSVE--GSGGGSATAARQSAVSSPRVGEG-LTTGSGRDSGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAAQWATASAEFVVTLRDVAAIEAAGGNGASLLHVPDRSTITTSRGGPANGHGTSGAGAXXXXXXXXXRAALYGGDGGIPPPPRSLMAFPPVARLLNLVLTSFNQLRE 552          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.090e-28
Identity = 97/288 (33.68%), Postives = 141/288 (48.96%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTL----RDIAAIEAA------GGNGAS----LLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822
            LQ +FL+ARDAWL     +   GA G     A         LM +IE++R+ WFE+ TQFRAIFL   +  +G S++    +S  S  RG  G  A G++     VLS WLLRR++ F+ +L+  L  V +G  L  ++E+C+FF ASMGR+G DFR  L PVF + +   A   W+ +  +    L    R+   + A        G+G+       + P  T                             + E   P PP S++AFPP+A+  N+VL S+NQLR+
Sbjct:  256 LQTEFLDARDAWLQSELEQGRSGASG-----ARGHGVGVADLMAMIEANRTHWFEITTQFRAIFLDDGLEASGSSSST--HSSSTSLLRGQDG--AGGSK-----VLSAWLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRASLGPVFSQAILAMADAHWSASRVELEALLERCAREGTMLRAQPRPHRQSGSGSHPYPMCYYAPGSTGPNQHDGRDTAHHSAQPDPDTS-------TSESDFPAPPSSILAFPPLAQFTNLVLVSYNQLRQ 522          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.950e-28
Identity = 91/247 (36.84%), Postives = 109/247 (44.13%), Query Frame = 1
Query:  109 TPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEA---------AGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822
            +PY  L+D+IE+ R+ WFE+ATQFRAIF      GA G AA                             L+ WL RRV AF   L+  LPLVED  S+RSLLE+CM F ASMGRLG DFRGLLVP FE  V    + QW +A   F   L  +A   A         AG      L V                                  G+  LP PP SL+ +P +A   N V+   N LRE
Sbjct:  238 SPYSYLVDVIETCRTHWFEIATQFRAIF------GADGDAA-----------------------------LASWLARRVGAFAALLRAALPLVEDAASVRSLLEQCMSFAASMGRLGADFRGLLVPAFEAAVWNGVTAQWRSATRAFQEGLARLAKASAHSSAAARSNAGAAPPLPLCVQKAPLGTPRAGSGAANGERWGGRDTAAAAAAECDGDALLPPPPLSLLNYPLLAHFFNDVVAGLNHLRE 449          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.900e-27
Identity = 85/217 (39.17%), Postives = 117/217 (53.92%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAAN----------------------RAGHGAVGGGDASATATA-TPYQVLMDLIESSRSQWFEVATQFRAIFL-SVDVGGAGGSAAAAA---RASPL-SSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRD 567
            LQV FLEARDAW+  + +                      R  H   GGG+++A      PYQ L D +E +R+  FE+ATQF+AIF  S D   A  +AA+     RA  + SSP G            +  +L++WL RR+  F+  L+ +LPLVEDG SL +LLE+ MFFGASMGR+G DFRGL+ P+F + +      +W  A+A     +RD
Sbjct:  192 LQVQFLEARDAWVQASLDQLDAQAGFSSDRLRQHLRLVRMRKMHPDQGGGESAAAGLGFQPYQYLTDAVEKNRTLCFEIATQFKAIFCGSADSSTASATAASGGNDGRAKAVDSSPPGHXXXXXXXXSDVADRLLAMWLSRRLGRFLNLLELVLPLVEDGASLHNLLEQTMFFGASMGRVGADFRGLIGPIFVKTIERFCKDRWGVASAQLCARIRD 408          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2Q4B0_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4B0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.520e-23
Identity = 96/286 (33.57%), Postives = 128/286 (44.76%), Query Frame = 1
Query:    1 LQVDFLEARDAWL------ADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLK-RLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLREVRVKG 837
            LQVDFLEARDAWL        +A  A   A   G AS+  +A   Q+L D IE  R++ FE+ TQF AIF                   P      A  T ++ N+  S  +LS+W  RRV  F+  L   ++  V D  +LR  L+   FF +SMGR+G DF+ LL P+FE  ++    G W+        TL+   A   AG  G   L   + +S+                                 PHPPRSL+A PP+AR LN  LT  N+LR   + G
Sbjct:  112 LQVDFLEARDAWLEGGIAKVGSAQAAAAAASDKGGASSRTSAQAEQIL-DGIERYRTRCFEIVTQFLAIFRG-----------------PF-----APSTSSSNNQDHSFSLLSMWTARRVQTFLASLNSNMISHVHDTATLRDALDASSFFASSMGRVGADFQSLLAPIFEPLLTKMIVGYWSDGLNGMSETLK---ACRDAGIAGP--LFGTETSSSKESSDGINVDDVDVQ--------------SSRTPHPPRSLLALPPLARFLNAYLTGLNELRRCLLPG 355          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S1UMN6_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMN6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.650e-23
Identity = 72/188 (38.30%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLR 564
            LQVDFLEARDAWL  A +R G  A+            P + L+D +E  R++ FE+ATQF AIF                RASP     G   + AA        +LS+W  RR+ +F+E L   +  ++D  SLR  LE C+FF +SMGRLG DF   L P+FE +++   + QW    + F  TL+
Sbjct:  189 LQVDFLEARDAWLESAPSRTGSIAL-----------APSEQLLDAVERYRTRVFEIATQFNAIF----------------RASP-----GKDTSTAA-------SLLSMWTSRRIHSFLEMLGSNINRMQDAASLRDALEACIFFSSSMGRLGCDFTAQLAPLFEPKMASLVTSQWKDGVSQFEETLK 337          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: K0S572_THAOC (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S572_THAOC)

HSP 1 Score: 107 bits (268), Expect = 1.220e-22
Identity = 92/285 (32.28%), Postives = 130/285 (45.61%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATA----TATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRD-SGDVLSLWLLRRVSAFVEQLKRLLPL-VEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLREVRVKG 837
            LQVDFLEARDAWL     + G  A      S++A     +   + ++D IE  R++ FE+ TQF AIF                        RG+    A+ + +D S  +LS+W  RRV +F+  L   + L V D  +LR  L+   FF +SMGR+G DF+ LL P+FE R++    G WA   +  V  L+   A   AG  G  L+     T+A                          ++     P PPR L+A+PP+AR LN  L   N+LR   + G
Sbjct:  252 LQVDFLEARDAWLESGIAKIGSAAAAVAATSSSADKGGASAQSEQILDGIERYRTRCFEIVTQFLAIF------------------------RGSLAPSASDDSQDHSFSLLSMWTARRVQSFLTSLSSNMSLYVHDTATLRDSLDSASFFASSMGRVGADFQPLLAPIFEPRLTEMIVGHWAEGLSGMVEILK---ACRDAGIAGP-LVGAETSTTAPPNGGSTDGPE---------------MTQSSRTPAPPRKLLAYPPLARFLNSYLEGLNELRRCLLPG 493          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A8K1C4X4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4X4_PYTOL)

HSP 1 Score: 105 bits (261), Expect = 7.820e-22
Identity = 83/279 (29.75%), Postives = 117/279 (41.94%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATAT---PYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDV---LSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLR 819
            L+ +FL  R AWLA                S T T T   PYQ  + LI+  R+ WF++ TQ+ AIF                                 GN    G V   L  W    V+ F++ L + LP ++D  SL ++LE+ +FFG S+GR+G DFR +LV  FE+ +    +  W TA  DF   L     + A GG G+++   P   ++                          +S       PPR LM+FP +A   N +LTSFN LR
Sbjct:  209 LKEEFLSCRSAWLA----------------SLTRTITTNDPYQYTVQLIDVKRTSWFDMITQYSAIF---------------------------------GNETVDGKVDPPLCRWATSTVADFIQILMKQLPKIDDFSSLATILEQSLFFGGSLGRVGVDFRAILVVYFEDHIVELLASSWQTACRDFKANLS----LHALGGGGSTMSATPIVLASYRNSMNGNGSGTASPFQPRVPSNDEDVS-------PPRVLMSFPLLAEFTNALLTSFNDLR 427          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2KBR9_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KBR9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.070e-20
Identity = 68/183 (37.16%), Postives = 99/183 (54.10%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADF 549
            LQVDF EARDAWL    N A + + G G++S T + T  ++L+DLIE+ R++ FE+ATQF AIF +                S  ++P             D   +LSLW+ RRV  F+ +LK     +++   LR LL+  +FF  SMGR+G DF+ LL P+FE ++    S +W     +F
Sbjct:  236 LQVDFFEARDAWLEAGCNNAFNPS-GIGESSITTSTT--ELLLDLIETYRTRCFEIATQFLAIFRTSQ--------------SKSNAPS------------DDVSLLSLWMSRRVQIFLAKLKEGFSAIDESAPLRDLLDATVFFATSMGRVGADFQALLPPLFEAKLVDIVSTRWNNGCKEF 389          
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2UGK5_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGK5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.710e-20
Identity = 90/285 (31.58%), Postives = 129/285 (45.26%), Query Frame = 1
Query:    1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQV------LMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAA---GNRRD--SGDVLSLWLLRRVSAFVEQL-KRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLR 819
            LQVDFLEARD WL DAA+            +A  T+ P  +      ++D IE  R++ FE+ATQF AIF                RAS  SS   A   V+    G R D  S  +LS+W  RR+  F+  +  R L  V++  ++R   +  +FF  SMGR+G DF+ L+ P+F  R+    +  W    + F  TL+    I    G  + L    + T                            +  +   P+PPR+L+A PP+ARL+N  LT  N+LR
Sbjct:  228 LQVDFLEARDVWL-DAAS----------SPTAPTTSAPNPLANQSEQILDSIEKYRTRCFEIATQFLAIF----------------RASTRSSSSSALAGVSLEQDGKRNDNSSSSLLSMWTTRRIHIFLNHVVSRQLASVQNTATVRDAFDAAIFFATSMGRIGADFQPLVAPLFHARMLAIVTYYWTDGLSTFAETLK----ICRDAGVASPLYSTTNTTIVTNTNTAEDLDPT--------------VVDKTKTPNPPRTLLALPPLARLVNAYLTGLNELR 467          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C0_ECTSI9.010e-9375.83Conserved oligomeric Golgi complex subunit 8 n=2 T... [more]
W7TN52_9STRA1.090e-2833.68Conserved oligomeric Golgi complex subunit 8 n=5 T... [more]
A0A836CL87_9STRA5.950e-2836.84Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A7S2V501_9STRA1.900e-2739.17Conserved oligomeric Golgi complex subunit 8 (Frag... [more]
A0A7S2Q4B0_9STRA5.520e-2333.57Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A7S1UMN6_9STRA6.650e-2338.30Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
K0S572_THAOC1.220e-2232.28Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A8K1C4X4_PYTOL7.820e-2229.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2KBR9_9STRA3.070e-2037.16Conserved oligomeric Golgi complex subunit 8 (Frag... [more]
A0A7S2UGK5_9STRA3.710e-2031.58Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12617contigL-elsbetiae_contig12617:914..5195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.7
Seed ortholog evalue4.6e-80
Seed eggNOG ortholog2880.D7G7C0
Preferred nameCOG8
KEGG koko:K20295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2069@1,KOG2069@2759
Ec32 ortholog descriptionConserved oligomeric Golgi complex subunit 8
Ec32 orthologEc-04_003390.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons6
Model size849
Cds size849
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12617.2110.1prot_L-elsbetiae_contig12617.2110.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12617 914..5195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.9529057-CDS-L-elsbetiae_contig12617:913..10741622815452.9529057-CDS-L-elsbetiae_contig12617:913..1074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 914..1074 -
1691682905.084469-CDS-L-elsbetiae_contig12617:913..10741691682905.084469-CDS-L-elsbetiae_contig12617:913..1074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 914..1074 -
1622815452.966016-CDS-L-elsbetiae_contig12617:1125..12391622815452.966016-CDS-L-elsbetiae_contig12617:1125..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 1126..1239 -
1691682905.1070492-CDS-L-elsbetiae_contig12617:1125..12391691682905.1070492-CDS-L-elsbetiae_contig12617:1125..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 1126..1239 -
1622815452.975329-CDS-L-elsbetiae_contig12617:1942..20931622815452.975329-CDS-L-elsbetiae_contig12617:1942..2093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 1943..2093 -
1691682905.121015-CDS-L-elsbetiae_contig12617:1942..20931691682905.121015-CDS-L-elsbetiae_contig12617:1942..2093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 1943..2093 -
1622815452.989551-CDS-L-elsbetiae_contig12617:2621..27361622815452.989551-CDS-L-elsbetiae_contig12617:2621..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 2622..2736 -
1691682905.1362295-CDS-L-elsbetiae_contig12617:2621..27361691682905.1362295-CDS-L-elsbetiae_contig12617:2621..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 2622..2736 -
1622815453.0019083-CDS-L-elsbetiae_contig12617:3917..41051622815453.0019083-CDS-L-elsbetiae_contig12617:3917..4105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 3918..4105 -
1691682905.1454725-CDS-L-elsbetiae_contig12617:3917..41051691682905.1454725-CDS-L-elsbetiae_contig12617:3917..4105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 3918..4105 -
1622815453.0126183-CDS-L-elsbetiae_contig12617:5075..51951622815453.0126183-CDS-L-elsbetiae_contig12617:5075..5195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 5076..5195 -
1691682905.1556091-CDS-L-elsbetiae_contig12617:5075..51951691682905.1556091-CDS-L-elsbetiae_contig12617:5075..5195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12617 5076..5195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12617.2110.1

>prot_L-elsbetiae_contig12617.2110.1 ID=prot_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=283bp
LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSR
SQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNR
RDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMG
RLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNG
ASLLHVPDKTSAASSSSSSSSAAAAAAAAEKAAAAAAALSGEGGLPHPPR
SLMAFPPVARLLNVVLTSFNQLREVRVKGEHE*
back to top

mRNA from alignment at L-elsbetiae_contig12617:914..5195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12617.2110.1 ID=mRNA_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4282bp|location=Sequence derived from alignment at L-elsbetiae_contig12617:914..5195- (Laminarionema elsbetiae ELsaHSoW15)
TTGCAGGTGGACTTCTTGGAGGCCAGAGATGCCTGGCTCGCCGATGCCGC CAATCGCGCGGGCCACGGGGCAGTTGGCGGGGGCGACGCGAGCGCTACGG CAACGGCGACCCCCTACCAGGTACACACCGACCGTGCGGTGTGGTGGGTG GTGGGTGCGGTGCGGCTGGAGCCGCAAAAAAAAACTCGGGAGCGTTGCTG ATTTGTTTTTTTGACAAGGGGTGGGATGTGTGCAGGCAGTGGTTGTCGTG CAGCACCACCTCTGCTGTCTGTTTTGCGGGTCACCTCACCTGGCGGTTTG TTGTGTAGTTAGTTGGTCGGTGCTTGTTTTGGGGGGTAATTGGCAAAGTG TGGGTGTGCTCACCTCCTTTAGGGACACAAGTGGGTGTAGGCCGAACGCG GGCATGGGAGCTCTACGTCGTCCACGGCGAAACAAACCAGGCCCTCTCGG GGCTGTTGTACGTACGTAATTTAGATCAGTGGACTAAAGTGGATGCTTTT CGGACACAAGTGGGTGTAGGTCAAGAGACTAAAGTGGGTGTATGATGATA AATAGAACATGTATGTAGAGTGGTGTGAGTGATGTGAGTGATGTGAGTGT ACCCGCCCAGGTAAGTATCAGACAAAAAATGGGTGCTCCATTGAGAGAAG CCTTGCGCGCTGTGGTGTGCTGTTCCAGCCACAAAACGTGCTCGGAGGTT CGAAGAAAAAAAAGTTGATTTGATTGTTATGTATGCCCTCTCTGCCTAGG GCCGTGGTCGTGTCGCCCACGCGCCAGAGAACCGCGTCTCGAGTGTGCTA TTGACTGCTCTCATCTCCGTGTTTTCTTTCGCCTCCGAATGCACCCATTT TTGTCCCGAAAGGAGTTGGGTACACACGTACACACCCATTATTGTCCATT GCCCTTCTTTTTTCCCACCGTTTCGCTACATACTTCCGGGTTTTCTGTTT TGCGGTGGGTCGGTCTTGCGACCAGTAAGGGGCCCACGAGCCCCGCTCTC GGGGTGAAGTCGACTTCTAGCTAGGTGACGCGAGTGGGGCTGAGCTGATC TCTTCGACGCAACCTGTCCAATTTTTTTTTTCTTCTTCAGGTTCTGATGG ATCTGATCGAGAGCAGCCGGTCCCAGTGGTTCGAGGTCGCGACTCAGTTC AGGGCGATTTTTCTCTCGGTGGACGTCGGGGGCGCGGGGGGGTCGGCAGC GGCAGCGGCTCGTGCGTCGCCGCTTTCCTCCCCCAGGGGGGCTCAGGGCA CGGTGGCCGCCGGCAACCGGCGAGACAGGTACGAACCCCGCGGAGCCCCC TTTTTTTTGTGAGTCGTTTCTTTCGGGGCGGTGTCTCGCCACGTGCTGAC AAAAATCAGTGACCAACGCCGCACTGTTGTAGACTTTTATTTTTATTTTT TTGTCTCCACATCTATTGCCAGCACTGGAGGATCATCCTTGCCACAAAGG ACATTTTGCCAGAGTTTTGTATTGTACTGACTCGTGGTCAACGAAAAAGG CTTCCTCTCCCCGAGATCCTCGCACCCCCCCCGTCTGCGGTGCTTTTGCC TAAGATGTTTTGTCGCGGGAAGGGTTCAGCCATCCCCCTTTCCCTCGTCG ACGGTGAGGTCGAAGTTTTGACTATTCTTGTGTGTAGTAACTTTCTTTCC CTTTTATGTAGAAGCGCTCTTTTGGCCTAACTCGCCGCGTGCAGGAAACA CTGGGCTAACGATTTTGTTGTGCCAGCCTTTTTTCTTTCCCTCTCTGTAA AATGTGGCGCTCGTTGGCAGTGTATGTCTGTGCCTCTGGCCGTATGCCGC AGACAATAATGATGGTGGCACCTGAAAACAAAAATGGTAGGTAAAATTGC GGTGCTTTTTGTGCGCGCGCGACTCAGTAGTTCGAGGTAACACGGGGCAG CGGGGAGGCAAATACGCATGCATAGGTGTGTATGTATGTATGTATGTATG TCCTGACGCCACACACAAAGAGAGATAGCAGAGTTGCCGGCGGGCATGAA CCGGCCTACGTCGGCAGGCGGGAAAACCCCCGCCCACAAACGGTACACCG TTGTTGTTGGAGGTAGCCGTGTCTTCGACGCAGAAAGAAGAACGCAGGGT TTCCAGCCCTCAAACCCCAACCATGACGCCCAGGCCCAACCCAATCCTAG ACCCTAACCCTCTACATAGCACTCACCCAACCTCCCAAGCTTGGTTGGTG TGCATTGGTCAGGTTCTAGGTCGCTGTACCCGGTCAACCAGCTTGTTGGC AGGGGTTTTCCCCTCCTGCCATAACGTCGGCAGACACCCGCGCGCCGGCA GAGTTGCTGCGAACTGACGCTGAGGGCGCGCTTTTTTTTTGTTTATCGAC ATCGTTTCCTCGTCTGTGTTGCGCCCGGCCCCGCCCCGCCCCCGTCCCCG CCTCCACCTCTGTACAAACCCGTCCTTTCGTCTGGGAATATTACGGTGTA CGGGAGCAGCGGGGACGTCCTGTCGCTGTGGCTGCTCCGAAGGGTGAGCG CCTTCGTGGAGCAGCTGAAGCGTCTCCTGCCTCTCGTGGAGGACGGAGGT TCGCTCAGGAGTCTTCTCGAAGAGGTATGTTGGTCTGTTCGGGCGTGTGT GTGTCGGTCTGTTCGTGTGTGTGTGTGTGTGTGTGTCTGTGTTTCTTTCG GCGTTTGTTGTTGTAGTTTTCCTGCGTGTCAATATTTCGCATGTCTTTTG TGCGTTTGTTGTTTTGGTGCGTGCCTGCGTGCCTGCGTGCCTGCCTGTGT GCGTGCGTGCGTGCATGTGCAAGTGCTTTAGCTCGGCCATGAGCTGTCGG TCATCAATGTCTGCTGTACACAGCGCTTATTTGCATAGGCTGCATATGCT TCGGTAAAAGAAAATAAACCAACAAACGCGTGAAGTAATGTTTGCGGCAT TGGAAACAGTGATGATGGGGACGGAAATATATGGTGATGATGATTACATA CACATAATTACACCCCCTTTTCTATCGATGTGGGGCAAATGCGATTTACC AACATACTTCTCTTATGTGTTTTATTCACAATGCGGCATCCCGGGCGACG ATTTTTGATGACTCGCGCCAACACGGAACGGGCACACCAAAAAATACTAT AGTGCATGTTCTTCGGCGCGAGCATGGGGCGGCTGGGGACGGACTTCCGA GGTCTGCTCGTCCCGGTGTTCGAGGAGCGGGTGAGCGGCGCGGCATCGGG GCAGTGGGCGACCGCGGCCGCGGACTTCGTGGTTACTCTTCGAGACATCG CCGGTAAATACATCTACATATTTTTTTTCTCCTAAATATGACTGCATATT GTTTACGTAAAAAATATATACTAGTATATAGATATATATATGGGCAAATA CGCTTCTCAAAGTGAAGTGTGTTTTTGCATACTACAGTAGATACGAAGTA CGTAGACAAATCCGACTTGTAGGTATGTATGTATGTATTGCCGGATTTCC GAATCCGACTTATGTTGCCGGTCAGAAGGACGGTTTAATAGGTCTGTTCG TGAACACGTTCGTGTTTTTGCGTGCCGTGGATGGTAGTACAGTATGTAGT ACATAGTGTTTTGGGAAATACTTGGAAGTGTGTCGGACCTCTCGAGCTCT TGTCTTGTCTGCGTGTCAGACCTGCGTATGTGGAAGGGAGATAAAATGGA GGTCGGTGGGGGGGGGGGCATGTGCATGGGAGACGGGTCGATTGCTGTTT GCAACGCGAGCACTACGGGCATCAGATGACCAACACAACAACGAGCAATA CGGCAAGGATACCACCGCGATGATCCTAGTCGACATTGATTATTTGTTGT ACACGAAACAATTTGTCCCCCCCCTCCCACCCTCCCCAGTTCCAACCGTA ATTGCACGACAGCTTTGGAGTATTATCCGCCAAAGTGAGCCAAAGAAACA CACACGACCCCCCCCCCCCCCCCCTCCTCCCACCATCCCCACGTGCCCCA TTGCAGCCATCGAGGCTGCCGGCGGCAACGGAGCCTCCCTCCTGCACGTG CCCGATAAGACAAGCGCCGCGTCGTCGTCGTCGTCGTCGTCGTCGGCGGC GGCGGCGGCGGCGGCGGCGGGTACTTATTCTTCAACGATCGGGCTCGGAA ATGACACTTCCGCGGAAGTAGAGAAGGCAGCGGCGGCGGCGGCGGCATTG TCGGGGGAAGGGGGCCTGCCGCATCCGCCCCGATCCCTGATGGCGTTCCC TCCAGTGGCGCGGCTGCTCAACGTCGTGCTGACCTCGTTTAACCAGCTGC GGGAGGTGAGAGTGAAAGGAGAACACGAATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12617:914..5195-

>mRNA_L-elsbetiae_contig12617.2110.1 ID=mRNA_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig12617:914..5195- (Laminarionema elsbetiae ELsaHSoW15)
TTGCAGGTGGACTTCTTGGAGGCCAGAGATGCCTGGCTCGCCGATGCCGC
CAATCGCGCGGGCCACGGGGCAGTTGGCGGGGGCGACGCGAGCGCTACGG
CAACGGCGACCCCCTACCAGTTGCAGGTGGACTTCTTGGAGGCCAGAGAT
GCCTGGCTCGCCGATGCCGCCAATCGCGCGGGCCACGGGGCAGTTGGCGG
GGGCGACGCGAGCGCTACGGCAACGGCGACCCCCTACCAGGTTCTGATGG
ATCTGATCGAGAGCAGCCGGTCCCAGTGGTTCGAGGTCGCGACTCAGTTC
AGGGCGATTTTTCTCTCGGTGGACGTCGGGGGCGCGGGGGGGTCGGCAGC
GGCAGCGGCTCGTGCGTCGCCGCTTTCCTCCCCCAGGGGGGCTCAGGGCA
CGGTGGCCGCCGGCAACCGGCGAGACAGGTTCTGATGGATCTGATCGAGA
GCAGCCGGTCCCAGTGGTTCGAGGTCGCGACTCAGTTCAGGGCGATTTTT
CTCTCGGTGGACGTCGGGGGCGCGGGGGGGTCGGCAGCGGCAGCGGCTCG
TGCGTCGCCGCTTTCCTCCCCCAGGGGGGCTCAGGGCACGGTGGCCGCCG
GCAACCGGCGAGACAGCGGGGACGTCCTGTCGCTGTGGCTGCTCCGAAGG
GTGAGCGCCTTCGTGGAGCAGCTGAAGCGTCTCCTGCCTCTCGTGGAGGA
CGGAGGTTCGCTCAGGAGTCTTCTCGAAGAGCGGGGACGTCCTGTCGCTG
TGGCTGCTCCGAAGGGTGAGCGCCTTCGTGGAGCAGCTGAAGCGTCTCCT
GCCTCTCGTGGAGGACGGAGGTTCGCTCAGGAGTCTTCTCGAAGAGTGCA
TGTTCTTCGGCGCGAGCATGGGGCGGCTGGGGACGGACTTCCGAGGTCTG
CTCGTCCCGGTGTTCGAGGAGCGGGTGAGCGGCGCGGCATCGGGGCAGTG
GGCGACCGCGGCCGCGGACTTCGTGGTTACTCTTCGAGACATCGCCGTGC
ATGTTCTTCGGCGCGAGCATGGGGCGGCTGGGGACGGACTTCCGAGGTCT
GCTCGTCCCGGTGTTCGAGGAGCGGGTGAGCGGCGCGGCATCGGGGCAGT
GGGCGACCGCGGCCGCGGACTTCGTGGTTACTCTTCGAGACATCGCCGCC
ATCGAGGCTGCCGGCGGCAACGGAGCCTCCCTCCTGCACGTGCCCGATAA
GACAAGCGCCGCGTCGTCGTCGTCGTCGTCGTCGTCGGCGGCGGCGGCGG
CGGCGGCGGCGGCCATCGAGGCTGCCGGCGGCAACGGAGCCTCCCTCCTG
CACGTGCCCGATAAGACAAGCGCCGCGTCGTCGTCGTCGTCGTCGTCGTC
GGCGGCGGCGGCGGCGGCGGCGGCGGAGAAGGCAGCGGCGGCGGCGGCGG
CATTGTCGGGGGAAGGGGGCCTGCCGCATCCGCCCCGATCCCTGATGGCG
TTCCCTCCAGTGGCGCGGCTGCTCAACGTCGTGCTGACCTCGTTTAACCA
GCTGCGGGAGGTGAGAGTGAAAGGAGAACACGAATGAAGAAGGCAGCGGC
GGCGGCGGCGGCATTGTCGGGGGAAGGGGGCCTGCCGCATCCGCCCCGAT
CCCTGATGGCGTTCCCTCCAGTGGCGCGGCTGCTCAACGTCGTGCTGACC
TCGTTTAACCAGCTGCGGGAGGTGAGAGTGAAAGGAGAACACGAATGA
back to top