mRNA_L-elsbetiae_contig12617.2110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI) HSP 1 Score: 300 bits (768), Expect = 9.010e-93 Identity = 182/240 (75.83%), Postives = 198/240 (82.50%), Query Frame = 1 Query: 118 QVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDK----TSAXXXXXXXXXXXXXXXXXXXXXXXXXXL-SGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822 Q LMDLIES RSQWFEVATQFRAIFLSV+ G+GG +A AAR S +SSPR +G + G+ RDSGD+LSLWLLRRVSAFVEQLK LLPLVEDGG LRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAA+ QWATA+A+FVVTLRD+AAIEAAGGNGASLLHVPD+ TS XXXXXXXXX L G+GG+P PPRSLMAFPPVARLLN+VLTSFNQLRE Sbjct: 316 QALMDLIESCRSQWFEVATQFRAIFLSVE--GSGGGSATAARQSAVSSPRVGEG-LTTGSGRDSGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAAQWATASAEFVVTLRDVAAIEAAGGNGASLLHVPDRSTITTSRGGPANGHGTSGAGAXXXXXXXXXRAALYGGDGGIPPPPRSLMAFPPVARLLNLVLTSFNQLRE 552
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.090e-28 Identity = 97/288 (33.68%), Postives = 141/288 (48.96%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTL----RDIAAIEAA------GGNGAS----LLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822 LQ +FL+ARDAWL + GA G A LM +IE++R+ WFE+ TQFRAIFL + +G S++ +S S RG G A G++ VLS WLLRR++ F+ +L+ L V +G L ++E+C+FF ASMGR+G DFR L PVF + + A W+ + + L R+ + A G+G+ + P T + E P PP S++AFPP+A+ N+VL S+NQLR+ Sbjct: 256 LQTEFLDARDAWLQSELEQGRSGASG-----ARGHGVGVADLMAMIEANRTHWFEITTQFRAIFLDDGLEASGSSSST--HSSSTSLLRGQDG--AGGSK-----VLSAWLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRASLGPVFSQAILAMADAHWSASRVELEALLERCAREGTMLRAQPRPHRQSGSGSHPYPMCYYAPGSTGPNQHDGRDTAHHSAQPDPDTS-------TSESDFPAPPSSILAFPPLAQFTNLVLVSYNQLRQ 522
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.950e-28 Identity = 91/247 (36.84%), Postives = 109/247 (44.13%), Query Frame = 1 Query: 109 TPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEA---------AGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLRE 822 +PY L+D+IE+ R+ WFE+ATQFRAIF GA G AA L+ WL RRV AF L+ LPLVED S+RSLLE+CM F ASMGRLG DFRGLLVP FE V + QW +A F L +A A AG L V G+ LP PP SL+ +P +A N V+ N LRE Sbjct: 238 SPYSYLVDVIETCRTHWFEIATQFRAIF------GADGDAA-----------------------------LASWLARRVGAFAALLRAALPLVEDAASVRSLLEQCMSFAASMGRLGADFRGLLVPAFEAAVWNGVTAQWRSATRAFQEGLARLAKASAHSSAAARSNAGAAPPLPLCVQKAPLGTPRAGSGAANGERWGGRDTAAAAAAECDGDALLPPPPLSLLNYPLLAHFFNDVVAGLNHLRE 449
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.900e-27 Identity = 85/217 (39.17%), Postives = 117/217 (53.92%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAAN----------------------RAGHGAVGGGDASATATA-TPYQVLMDLIESSRSQWFEVATQFRAIFL-SVDVGGAGGSAAAAA---RASPL-SSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRD 567 LQV FLEARDAW+ + + R H GGG+++A PYQ L D +E +R+ FE+ATQF+AIF S D A +AA+ RA + SSP G + +L++WL RR+ F+ L+ +LPLVEDG SL +LLE+ MFFGASMGR+G DFRGL+ P+F + + +W A+A +RD Sbjct: 192 LQVQFLEARDAWVQASLDQLDAQAGFSSDRLRQHLRLVRMRKMHPDQGGGESAAAGLGFQPYQYLTDAVEKNRTLCFEIATQFKAIFCGSADSSTASATAASGGNDGRAKAVDSSPPGHXXXXXXXXSDVADRLLAMWLSRRLGRFLNLLELVLPLVEDGASLHNLLEQTMFFGASMGRVGADFRGLIGPIFVKTIERFCKDRWGVASAQLCARIRD 408
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2Q4B0_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4B0_9STRA) HSP 1 Score: 108 bits (269), Expect = 5.520e-23 Identity = 96/286 (33.57%), Postives = 128/286 (44.76%), Query Frame = 1 Query: 1 LQVDFLEARDAWL------ADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLK-RLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLREVRVKG 837 LQVDFLEARDAWL +A A A G AS+ +A Q+L D IE R++ FE+ TQF AIF P A T ++ N+ S +LS+W RRV F+ L ++ V D +LR L+ FF +SMGR+G DF+ LL P+FE ++ G W+ TL+ A AG G L + +S+ PHPPRSL+A PP+AR LN LT N+LR + G Sbjct: 112 LQVDFLEARDAWLEGGIAKVGSAQAAAAAASDKGGASSRTSAQAEQIL-DGIERYRTRCFEIVTQFLAIFRG-----------------PF-----APSTSSSNNQDHSFSLLSMWTARRVQTFLASLNSNMISHVHDTATLRDALDASSFFASSMGRVGADFQSLLAPIFEPLLTKMIVGYWSDGLNGMSETLK---ACRDAGIAGP--LFGTETSSSKESSDGINVDDVDVQ--------------SSRTPHPPRSLLALPPLARFLNAYLTGLNELRRCLLPG 355
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S1UMN6_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMN6_9STRA) HSP 1 Score: 108 bits (269), Expect = 6.650e-23 Identity = 72/188 (38.30%), Postives = 98/188 (52.13%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLR 564 LQVDFLEARDAWL A +R G A+ P + L+D +E R++ FE+ATQF AIF RASP G + AA +LS+W RR+ +F+E L + ++D SLR LE C+FF +SMGRLG DF L P+FE +++ + QW + F TL+ Sbjct: 189 LQVDFLEARDAWLESAPSRTGSIAL-----------APSEQLLDAVERYRTRVFEIATQFNAIF----------------RASP-----GKDTSTAA-------SLLSMWTSRRIHSFLEMLGSNINRMQDAASLRDALEACIFFSSSMGRLGCDFTAQLAPLFEPKMASLVTSQWKDGVSQFEETLK 337
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: K0S572_THAOC (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S572_THAOC) HSP 1 Score: 107 bits (268), Expect = 1.220e-22 Identity = 92/285 (32.28%), Postives = 130/285 (45.61%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATA----TATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRD-SGDVLSLWLLRRVSAFVEQLKRLLPL-VEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLREVRVKG 837 LQVDFLEARDAWL + G A S++A + + ++D IE R++ FE+ TQF AIF RG+ A+ + +D S +LS+W RRV +F+ L + L V D +LR L+ FF +SMGR+G DF+ LL P+FE R++ G WA + V L+ A AG G L+ T+A ++ P PPR L+A+PP+AR LN L N+LR + G Sbjct: 252 LQVDFLEARDAWLESGIAKIGSAAAAVAATSSSADKGGASAQSEQILDGIERYRTRCFEIVTQFLAIF------------------------RGSLAPSASDDSQDHSFSLLSMWTARRVQSFLTSLSSNMSLYVHDTATLRDSLDSASFFASSMGRVGADFQPLLAPIFEPRLTEMIVGHWAEGLSGMVEILK---ACRDAGIAGP-LVGAETSTTAPPNGGSTDGPE---------------MTQSSRTPAPPRKLLAYPPLARFLNSYLEGLNELRRCLLPG 493
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A8K1C4X4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4X4_PYTOL) HSP 1 Score: 105 bits (261), Expect = 7.820e-22 Identity = 83/279 (29.75%), Postives = 117/279 (41.94%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATAT---PYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDV---LSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLR 819 L+ +FL R AWLA S T T T PYQ + LI+ R+ WF++ TQ+ AIF GN G V L W V+ F++ L + LP ++D SL ++LE+ +FFG S+GR+G DFR +LV FE+ + + W TA DF L + A GG G+++ P ++ +S PPR LM+FP +A N +LTSFN LR Sbjct: 209 LKEEFLSCRSAWLA----------------SLTRTITTNDPYQYTVQLIDVKRTSWFDMITQYSAIF---------------------------------GNETVDGKVDPPLCRWATSTVADFIQILMKQLPKIDDFSSLATILEQSLFFGGSLGRVGVDFRAILVVYFEDHIVELLASSWQTACRDFKANLS----LHALGGGGSTMSATPIVLASYRNSMNGNGSGTASPFQPRVPSNDEDVS-------PPRVLMSFPLLAEFTNALLTSFNDLR 427
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2KBR9_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KBR9_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.070e-20 Identity = 68/183 (37.16%), Postives = 99/183 (54.10%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAAGNRRDSGDVLSLWLLRRVSAFVEQLKRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADF 549 LQVDF EARDAWL N A + + G G++S T + T ++L+DLIE+ R++ FE+ATQF AIF + S ++P D +LSLW+ RRV F+ +LK +++ LR LL+ +FF SMGR+G DF+ LL P+FE ++ S +W +F Sbjct: 236 LQVDFFEARDAWLEAGCNNAFNPS-GIGESSITTSTT--ELLLDLIETYRTRCFEIATQFLAIFRTSQ--------------SKSNAPS------------DDVSLLSLWMSRRVQIFLAKLKEGFSAIDESAPLRDLLDATVFFATSMGRVGADFQALLPPLFEAKLVDIVSTRWNNGCKEF 389
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Match: A0A7S2UGK5_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGK5_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.710e-20 Identity = 90/285 (31.58%), Postives = 129/285 (45.26%), Query Frame = 1 Query: 1 LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQV------LMDLIESSRSQWFEVATQFRAIFLSVDVGGAGGSAAAAARASPLSSPRGAQGTVAA---GNRRD--SGDVLSLWLLRRVSAFVEQL-KRLLPLVEDGGSLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAASGQWATAAADFVVTLRDIAAIEAAGGNGASLLHVPDKTSAXXXXXXXXXXXXXXXXXXXXXXXXXXLSGEGGLPHPPRSLMAFPPVARLLNVVLTSFNQLR 819 LQVDFLEARD WL DAA+ +A T+ P + ++D IE R++ FE+ATQF AIF RAS SS A V+ G R D S +LS+W RR+ F+ + R L V++ ++R + +FF SMGR+G DF+ L+ P+F R+ + W + F TL+ I G + L + T + + P+PPR+L+A PP+ARL+N LT N+LR Sbjct: 228 LQVDFLEARDVWL-DAAS----------SPTAPTTSAPNPLANQSEQILDSIEKYRTRCFEIATQFLAIF----------------RASTRSSSSSALAGVSLEQDGKRNDNSSSSLLSMWTTRRIHIFLNHVVSRQLASVQNTATVRDAFDAAIFFATSMGRIGADFQPLVAPLFHARMLAIVTYYWTDGLSTFAETLK----ICRDAGVASPLYSTTNTTIVTNTNTAEDLDPT--------------VVDKTKTPNPPRTLLALPPLARLVNAYLTGLNELR 467 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12617.2110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12617.2110.1 >prot_L-elsbetiae_contig12617.2110.1 ID=prot_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=283bp LQVDFLEARDAWLADAANRAGHGAVGGGDASATATATPYQVLMDLIESSRback to top mRNA from alignment at L-elsbetiae_contig12617:914..5195- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12617.2110.1 ID=mRNA_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4282bp|location=Sequence derived from alignment at L-elsbetiae_contig12617:914..5195- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12617:914..5195- >mRNA_L-elsbetiae_contig12617.2110.1 ID=mRNA_L-elsbetiae_contig12617.2110.1|Name=mRNA_L-elsbetiae_contig12617.2110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig12617:914..5195- (Laminarionema elsbetiae ELsaHSoW15)back to top |