mRNA_L-elsbetiae_contig1261.2107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1261.2107.1
Unique NamemRNA_L-elsbetiae_contig1261.2107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A835ZAH9_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH9_9STRA)

HSP 1 Score: 182 bits (461), Expect = 8.700e-53
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEP--PPAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMP--ADAEAFSLWITSILPMQLREKHTLLSSNSTTARLLACERHLISLNGGAP 578
            NVPMFPGE L LHLFEPRY+LMM+RI++T+RRF YVPNY+ Y AS GDVALIA++ +C+F SDGR  L A L  R  +TDH+VE GT GL+YC+L+   DEP  P     +   ++ +          V+ P+ S VV  +GEMP  A  + FSL+I  +LP+   EKH++L+  +T  RL AC   L  + G  P
Sbjct:   70 NVPMFPGEILSLHLFEPRYRLMMRRIIDTTRRFVYVPNYTNYEASIGDVALIAEVKDCDFQSDGRCYLSATLIGRSRITDHYVEDGTHGLNYCQLETLVDEPIQPHEARFVTTLVQPI----ANFVSSVLGPIHSDVVKTHGEMPPVAREQEFSLFIAGVLPLGNAEKHSMLACTNTLERLRACAAALGRMGGDNP 261          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A4D9DDG8_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDG8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.980e-50
Identity = 98/196 (50.00%), Postives = 127/196 (64.80%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVT-DHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVI---EPVMSQVVDRYGEMPADA--EAFSLWITSILPMQLRE-KHTLLSSNSTTARLLACERHLISLNG 569
            N+P+FPGE L+LHLFEPRY+LMM+RIVN SRRFAYVPNYS Y A  GD+ALIA+L E  F+ DGR  L A++  R T+  D +VE GT GL YCRL+   DE P + ++ +  L +   + R +A  +      + + VVDRYGEMP     EA SLWI ++LP + R+ KH LL S  T+ RL  C   L +L G
Sbjct:  186 NLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKS-AEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCMSKLQALRG 380          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: D8LI81_ECTSI (Lon N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI81_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 3.800e-47
Identity = 87/188 (46.28%), Postives = 115/188 (61.17%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYV--------PNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMPADAEAFSLWITSILPMQLREKHTLLSSNSTTARLLAC 542
            NVP+FPG+TL +H FEPRYKLMM+RI+NTSRRFAYV         N        G +AL A + E EFLSD RV++  KL  R TV + FVE GT  LHYC+L+   D+P   G   A +LE+LH R + +  G + P   Q+V+ +G MP DA   S+W+ S+LP    +KH+L+ S  T  R+  C
Sbjct:   38 NVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVQSTNNDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGDLHYCQLEPFDDDPLQDGG--ADELEDLHTRAKTMCNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRTC 223          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.130e-45
Identity = 86/188 (45.74%), Postives = 117/188 (62.23%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYV-----PNYSG---YVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMPADAEAFSLWITSILPMQLREKHTLLSSNSTTARLLAC 542
            +VP+FPG+TL +H FEPRYKLMM+RI+NTSRRFAYV     P+ +         G +AL A + E EFLSD RV++  KL  R TV + FVE GT  LHYC+L+   D+P   G   A +L +LH R + +  G + P   Q+V+ +G MP DA   S+W+ S+LP    +KH+L+ S  T  R+ AC
Sbjct:  122 SVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPSTNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGNLHYCQLEPFDDDPLQEGG--AGELTDLHTRAKTICNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRAC 307          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 147 bits (371), Expect = 1.610e-39
Identity = 78/183 (42.62%), Postives = 115/183 (62.84%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVI---EPVMSQVVDRYGEMPADAEAFSLWITSILPMQLREKHTLLSSNSTTARLLAC 542
            N  +FP   L L+LFEPRYK+M+ RIV +SRRFAY+P +  Y A+ GD+ +IA++++ EFL+DGR  L AK   R T+ + ++E GTQGLH+C++   +D    + S+  A LEE       L   V+     +  ++  +YG  PAD+E FS W++SILP+   +KH LL+  +TT RL  C
Sbjct:  107 NDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGVSASESERQA-LEEAVSDCEQLFASVMARSSHLAREIESQYGSRPADSERFSFWLSSILPVPYGDKHCLLTCLNTTERLTLC 288          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 140 bits (353), Expect = 5.400e-37
Identity = 74/156 (47.44%), Postives = 100/156 (64.10%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDR-YGEMPADAEAFSLWITS 467
            N  +FPG  L L LFEPRYKLMM+RI++T+R FAYVPN++ Y A  GDVAL+ +L E EFL+DGR LL   L SRQ + +H+VE GTQGLHYCRL++  D+    G     + + L  + R L   +      +++++  G  P D E FSLW+ S
Sbjct:  130 NSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSRQRIAEHYVEQGTQGLHYCRLESLRDDG--LGEQRRQQADYLSQQLRTLLASLGGGSSRRLLEQGLGSPPQDLENFSLWLLS 283          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA)

HSP 1 Score: 132 bits (333), Expect = 1.220e-33
Identity = 74/182 (40.66%), Postives = 109/182 (59.89%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMP--ADAEAFSLWITSILPMQLREKHT---LLSSNSTTARL 533
            N  +FPG  L LHLFE RY+ M+ R V+++R+F Y+PN+S Y A+ GDV L+A + ECEFLSDGR LL A L  R  +T+ +VE GTQGLHYC+ QA  +          A ++E+H +   + +     +  Q+V+  G+ P  ++A  FS WI++++ M  R   +   LL +  T  RL
Sbjct:  123 NNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVVITNSWVEEGTQGLHYCQYQAYEETDKTVKE---ADVKEIHAKVNVILQSA-PGLREQIVNHIGKQPPISNATQFSFWISALVTMITRAGKSGMPLLKTTKTAERL 300          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 8.520e-30
Identity = 72/187 (38.50%), Postives = 103/187 (55.08%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGS--DLAAKLEELHGRTRGLARGVIEPV----MSQVVDRYGEMPADAEAFSLWITSILP----MQLREKHTLLSSNSTTARL 533
            N  +FPG  L+LHLFE RYKLM+KR++  +R+F Y+PN++ Y AS GDV ++A++ EC FL DGR LL A++  R  V D +VE GT  L YC+ +   DEP       +L         R +G  +  +EP+    + + +  + E  +  EA S W+ + L     M    K  LL SNS   RL
Sbjct:   94 NDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAVVADSWVEDGTGNLAYCQYELFKDEPENDDQLQELLVTANLSLERFKGFVQR-LEPIRQFTLKEQLGGFPEERSTPEAISWWLINTLSRFDGMSTSTKVALLKSNSFKWRL 279          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: A0A7S0W860_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W860_9CRYP)

HSP 1 Score: 114 bits (286), Expect = 1.560e-28
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   12 MFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPP----------AGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMPADAEAFS 452
            +FP   L L+LFEPRYK+M+ RIV +SRRFAY+P +  Y A+ GD+ +IA++++ EFL+DGR  L AK   R T+ + ++E GTQGLH+C++   +D              A SD       +  R+  LAR        ++  +YG  PAD E FS
Sbjct:    3 LFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDIGVIAEITDIEFLADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGESADEAERRTLQEAVSDCDQLFASVIARSSHLAR--------EIESQYGSRPADPERFS 151          
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Match: L1JVD8_GUITC (Lon N-terminal domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JVD8_GUITC)

HSP 1 Score: 117 bits (293), Expect = 2.930e-28
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 NVPMFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIAQLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPPPAGSDLAAKLE 344
            N  ++P   L LHLFEPRYK+M+KRIV  SR+FAY+P    Y AS GDV +IA+LSE EFL DGR  + AK   R  + D +VE GTQGLH+C+++   DEP  + +D+    E
Sbjct:   44 NDTLYPYSPLVLHLFEPRYKIMIKRIVQASRKFAYLPCMHSYQASVGDVGVIAELSEVEFLPDGRAHVQAKCRDRFRILDTWVEDGTQGLHWCKVEIIHDEPVESHADVQVSQE 157          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1261.2107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAH9_9STRA8.700e-5348.47PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A4D9DDG8_9STRA6.980e-5050.00RING-type domain-containing protein n=2 Tax=Monodo... [more]
D8LI81_ECTSI3.800e-4746.28Lon N-terminal domain-containing protein n=1 Tax=E... [more]
A0A6H5KHS7_9PHAE3.130e-4545.74RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6U2J5U5_HEMAN1.610e-3942.62Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A482RY16_9ARCH5.400e-3747.44RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S0CSC1_9EUKA1.220e-3340.66Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6B2LCC5_9EUKA8.520e-3038.50RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A7S0W860_9CRYP1.560e-2840.13Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JVD8_GUITC2.930e-2850.88Lon N-terminal domain-containing protein n=2 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1261contigL-elsbetiae_contig1261:21725..27536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog2880.D8LI81
KEGG koko:K20779
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.histone H2A-K13 ubiquitination
EggNOG OGsCOG2802@1,KOG4159@2759
EC2.3.2.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Ec32 ortholog descriptionZinc finger, C3HC4 RING-type
Ec32 orthologEc-19_001490.1
Exons5
Model size719
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1261.2107.1prot_L-elsbetiae_contig1261.2107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1261 21725..27525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.711763-CDS-L-elsbetiae_contig1261:21724..218521622815452.711763-CDS-L-elsbetiae_contig1261:21724..21852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 21725..21852 -
1691682904.973889-CDS-L-elsbetiae_contig1261:21724..218521691682904.973889-CDS-L-elsbetiae_contig1261:21724..21852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 21725..21852 -
1622815452.7802575-CDS-L-elsbetiae_contig1261:22579..227721622815452.7802575-CDS-L-elsbetiae_contig1261:22579..22772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 22580..22772 -
1691682904.9871478-CDS-L-elsbetiae_contig1261:22579..227721691682904.9871478-CDS-L-elsbetiae_contig1261:22579..22772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 22580..22772 -
1622815452.7936108-CDS-L-elsbetiae_contig1261:24340..245711622815452.7936108-CDS-L-elsbetiae_contig1261:24340..24571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 24341..24571 -
1691682904.9964101-CDS-L-elsbetiae_contig1261:24340..245711691682904.9964101-CDS-L-elsbetiae_contig1261:24340..24571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 24341..24571 -
1622815452.809553-CDS-L-elsbetiae_contig1261:25809..258791622815452.809553-CDS-L-elsbetiae_contig1261:25809..25879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 25810..25879 -
1691682905.005488-CDS-L-elsbetiae_contig1261:25809..258791691682905.005488-CDS-L-elsbetiae_contig1261:25809..25879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 25810..25879 -
1622815452.8233333-CDS-L-elsbetiae_contig1261:27439..275251622815452.8233333-CDS-L-elsbetiae_contig1261:27439..27525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 27440..27525 -
1691682905.0157347-CDS-L-elsbetiae_contig1261:27439..275251691682905.0157347-CDS-L-elsbetiae_contig1261:27439..27525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 27440..27525 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.834671-UTR-L-elsbetiae_contig1261:27525..275361622815452.834671-UTR-L-elsbetiae_contig1261:27525..27536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1261 27526..27536 -
1691682905.0252292-UTR-L-elsbetiae_contig1261:27525..275361691682905.0252292-UTR-L-elsbetiae_contig1261:27525..27536Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1261 27526..27536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1261.2107.1

>prot_L-elsbetiae_contig1261.2107.1 ID=prot_L-elsbetiae_contig1261.2107.1|Name=mRNA_L-elsbetiae_contig1261.2107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
MFPGETLQLHLFEPRYKLMMKRIVNTSRRFAYVPNYSGYVASNGDVALIA
QLSECEFLSDGRVLLVAKLTSRQTVTDHFVEGGTQGLHYCRLQARSDEPP
PAGSDLAAKLEELHGRTRGLARGVIEPVMSQVVDRYGEMPADAEAFSLWI
TSILPMQLREKHTLLSSNSTTARLLACERHLISLNGGAPPALAGRRDAAA
VAEDFERQVAAGESEESLAALVAGGPAGAAARGVDP
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mRNA from alignment at L-elsbetiae_contig1261:21725..27536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1261.2107.1 ID=mRNA_L-elsbetiae_contig1261.2107.1|Name=mRNA_L-elsbetiae_contig1261.2107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5812bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:21725..27536- (Laminarionema elsbetiae ELsaHSoW15)
ACAACGTGCCGATGTTTCCGGGAGAGACTTTGCAGCTGCACCTGTTCGAG CCCCGATACAAGCTCATGATGAAGCGGATCGTTAACACGTCTCGAAGGTA ATGTGTGTTATGTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTT TTTTCTCACATTAGCTCTCTCGTCCAAAACATCCTTGTATGTAGGTTGTA CACATGTAGACTATACCGTAATCATGCGGGCCATCGCCCCCCCCCCCCCC CCCCCCCCCTTATCTCTTTGTTCTTTTGTGCTACCGTCTCTTTATTGTTC GTCGTTGTTTTTATTTCTTTTCATTCTTCGCTCCCTTCTNNNNNNNNNNT TCTCTCTCGTCCAAAAAATCCTTTTTTTTAGGTTGCACAAATGTTAACTA TCCCGAAATCGTTGGGGCCAGCGCCCCCCCCCCCCCCCCCGGCTTTATTG GCTGTTTGATTGTTAGACCGTTCGCATTTATTTGGCCCGTTGTTGTCTTT CGCCTTCTGTCACCGGCCCTTTTGCCCCATTTGCCTTCCCCCCGCTGACG GTGATCCTGGACCCCCCCCCGTGGGCCTGCTGTTTCTGGCCCCCCATGGT GTTTGTTTTCAGTGTTAGTAGGTTTAAGCCCAACCCTCGCTTGCCTGGCA CACCTGGATCCCGACAAACTCGGGGAGCACGGGGGGGGAGCCTAGGGCCG TGTACGTAGAGTCCCTTCGCGTCTTTCGGCAGGGCCTGCCTCCGCGCACA ATAACTGAGATGGACATTGCCGTCTACGCTGAAACGCCAAAAAGGCCCGC GCACCTGATTTTGTTTTGTGTCTGGCGCACCAAGTTACGAGGGGAGGGTG CGGTTGCGTTTTTTTTTTCTTCTTAATATTTATTTCCAGTGCTCGATGGG CTCCTTGTCACGAGGACATCTTGCCAGGTTAGTGAACCGTGGTGACACAG AAGGGTTCCCTTCCCCAAGGCCCCTCCCACTGCCCCCGTCTGCGGTGCTT GCCTAAGATTTTTGTCGCGAGAAGGGCTCAGCCGTCCCTTTCCCTCGTCG TCGACGGTGAGGTCGAAGTTTCGGTCGTTAATAACCCGGCACATAACCCC ACCTGGAAGTAGATCTAACAGATGAGGTGGGGTGAGGGTGGGGTGGAGAA TATCCCGTGGACCCCCCTGGCTTTGCTTCCTCCTCCTACAATATGATGTT CCTTGTGGTCACCTTTTTTTTTTCAATAAATATGCCATCATTTCATTTTT TGCTCGGGGACATAGACACGTAGTAAACACGGGAGATCCTCCGCTCCTGT GAGACTCCGTGTCTTTTTCACTCGACCTAAATATGACGTTGTGTGCGCTT CGTGTCTCCTTTGCATCCAGCGTTTTGGTGCGTTCCTCCTACCACTTGGT GAGTGCCGAGTTTTGGAATAGTGAAGGAAACAACATTTACGCAAAACGTT GCGTCTCCTATTCCGCGATCTGTCTGTCCCCCAATGTTTCACGTTTGCGC CTATTCATTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCNNNNNNNNNTGCTGCTTCCTTTTCCGCTTCTTTTTCTCCCCCCTTTT TTTTCTTTTTCTCTTTTTTTTTTTCCCTCCCCCCCCCCCCCCCCCCCACT CCCACAGATTCGCGTACGTCCCCAACTACTCGGGCTACGTGGCGTCCAAC GGGGACGTGGCACTGATAGCGCAGCTGGTGAGTCACGCGAGCGATAGTTC ACGCTCGCAGCACGTTGCTGCTGCTGCTGCTGCTGCTGGTGCATGTCTCA CGCTGCCTTCAGCTGTTTTTCGACGACCGTCTTGGGGTCCTCGGCTTTAA AATGGGCTGAAAGAGCCTCGAGAGGAGGCCCAAAAAACCCTGTTGTACAA TACACCATACCTATGGTATAGACTTCCTGTATTAGAGCCCCCAGTTCTCA AAAATAGCTGTGGGGGGAGCGGGGGGGGGGTATTTATCCAGGAAATAGAG TTAAAAATCCCCCACCGCGGTCACTTTTCCAGAATTAGGGGGCCCTGCTG CAGGAAGCCTATGGTATAGTGTAGGTGGAAAGCGGCACACGAGACAAGGC AGGGCCGAATACGGCATCTCCTGTGCCCCGCTCACTTCCCGCTCCTTCCT TCTGACGTGTGCAAGTGGTGATGGAAAGGGTTTGCATCTGACCTATATCT GCACTGCCGCGCGTGTATCCCAGTCGGCAAGCAGTCTGCGGTGGGCAGTT GGTTCCGTGTTTTCTGTTTTAAAACCATCGTCACAACACAGAAAATACCA CACCTCTGGGTATTGTATGTATTACCCCAACTTACTCGAATCCTCGTCTG AGTATATATATGGTAAGTACCTCGGTATCCAAACGACAATATAATATAAA AAACCTAGAATCAGACCTTGAAATGGGGTTTCGGCAGAGCGGGATAGTGC TTTGTATGTATGTATATGCGAAAATACCCTTTGTTTTGTTGCTTGTGGCC GAAAACTGAAACTAGCCGACGACAACAACAACAACAAACAGACAGTCACG GCGACGGACGATTGCACCTCTCCAAGGCCACCTGTAATAACCCTACAGCA GTTCAATCGCCTGCGTTGTTTTTATGTGCACACTGATTGTCCATTTTATA AAAATAAACAATGAGTCAAAGATGGAACATACCCCCACACTAGAGCAAGG ACTCAATATGGGGTTCAAACGGTATTCCATGTACAGTGACGTAACATTTG GCGAAGCGAGCAGAAAAACAACCCAAAATATCAGAAGAGTTCAACATCTC CCCTGCAAAGATTTGCGAGGTCGGCCAACGAAAAACGGACACCACTACTA CTGTTGCAGATACTAAATACTAGAAGTAATGATTAACAACGCGAGTGACT AAAAAAAATCTCTTCTCCGCTGCTGCTTTTCGTCGAACAAACCCCGTGAA CAAAAAACGCGACAGTCCGAGTGCGAATTCCTCAGCGACGGAAGAGTGCT GCTCGTGGCCAAGCTCACCTCTAGACAGACGGTCACCGATCACTTCGTGG AGGGGGGGACCCAGGGGCTGCACTACTGCCGCCTCCAGGCCCGCAGCGAC GAGCCCCCCCCGGCCGGGAGCGACCTCGCCGCGAAGCTGGAGGAGCTCCA CGGGAGGACAAGAGGGCTGGCTCGTGGCGTCATCGAGCCCGTCATGGTGC GTTTCTTAACAAATAACGATCGTTCTTGTGTAGCGATTTCGTCGGTAAAT ATTATTTCGCCTTTATTGTTGACGAGGGTGGGGAGTAGTGCTGAACCCTG CTCGCGATAAAAGCATCTAAGGCGGGCACCGCAGGAGGGGGTCCAACCCC CCCCCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAATG GAGGAAGGGGGTCAGTGGGGCAGACGACAAAAGATGGAAGAAAATAAATA AATAAATATATATCATTGTACCCACAAACATACAAAACGTACGGATTTTG TGCGAGTATATCTTGGACCGGAAATGGGGGGGTTAGTTAGTATGCCTACA ACAGTCCCTCTCGAACGACTTTTTCTCAGACAGGACGTGGACTGCTGCTG ACATTTGCATACATTAATTAAAACGTCGGGGATAGTATTTATGTGAAACA AAGTAATTCCAGGGCGACCGGTTGTAGACACGCTATTTAGTTACCGTAAT TATGCGGGTTATCGCATCCCCGTGTTCGCGTTTTTCTATGGCGTATTTCT CCACAACCAGGAGGGTACCACTGCCGAAAACGGTGGTTTTCGAAACTTCT GGTCGGGGGTTTTCCAGAGAGGTACCAGTTAGTGTCCGCACCCTCCTGGT TGTGGAAAAATACGCTGTAGATAAACGCTTAACGCGGGGGTGCATGATTA CGGTAATCCTTCCTCGCCGCCTCCGACTTTTGAATTAATATGCGTGCGTG TAAATACTCGAGTGATCTTCGGAGAAGTGGGGGTAAAATGCAGACAGATG CGGGTAATACATATTTAGATAAAAATTGTGGAGTTGGAGGGGTACATCCA TTCCCCGGGACATAGGACAAACGGGGGCATGCTGCTGAGCTTATTTGTTT TCGAAACAAAAAACACGGAGTAGAGCGTACCATAATCTGGTAGGCGGTTA GGGCTCGCCTTTCGTGGTGCAATACCGTAGGTGACACCAGATACCACACC CCCTGGACAGATTTTCAAAGCTCGATTCCTCCTCAGCAAGAAGAGAGCCA GTGCCGAAAGAGGTGGCATTGGAAAGATCTAGTCGAGGGCTGTCCGAACA TGTGTTGCTTGGTGCTGGCACCCTCTTCGTTACAGAGCAATGGAGCTCTA AAGTTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATCAGGGA CCGCCTTCCGCCTTCACGAAGACGAAGAAATTTTATCTAGAAGTAGAGAA GGGATTCCGAACCCTATACGTAACCGTAACCCTACCCCCAAACCCCGACC CCCTTTCCCGATCCCCTTTCTCGACTGGTGTATTTTATGTTTTATCCCAT ATGTTAGATCAAGACAAAACCTAACCCTGCGAAGGCTACGGAATATCAGA AACATGGCACGTCACCCAAACTGCAGCAAATCGCAAGCATGCAGACCAGC GGTATTCGTTTCCGCCTTCCACGTGAACAACCTGACCTCGCCGATCCCCT CGCTCCCCCGACCACCAACCCCATCGTGCCCCCCACCTCGCCTCCCCCCG CAACAACAAAAAAGTCGCAAGTTGTCGACAGATACGGCGAGATGCCAGCG GACGCGGAAGCCTTCTCCTTGTGGATAACCTCCATCCTGCCCATGCAGCT GCGCGAGAAACACACGCTGCTCTCCAGCAACTCGACCACCGCGCGCCTGC TCGCCTGCGAACGCCATCTCATCTCCCTGAACGGGGGCGCGCCACCGGCT CTGGCCGGTACGTTTCTATTTTCCGTACATATTTCTGCACGTTTTGTTTT TTCTGGCCTTTGTCATCTGTGCTCATCTACCCCGCGCCTCTTTTTTTTTT TCTTCTTTTTTTCTTTTTTTTTTTTTTCTTCCATTCGAGTATTATTGCGT TGCGCTGATTCCAAGCCCGCTTCAGAACATGGGCATGGTGTTGCTATATA TGTAACGGGGAACCGATGTTGTGTTCTCTGATCAGAAACTCCCCGGCCCT CTATGAATCCCCCCCGTGCCCGCCCCCAAAACACCTCAAAGCTTCCCTTT TTCTTTAGTTCTTTCCGCAACGCACCGCAACGCACCGCAACCAAGGACCA AATAAAAGTCCTTGGCCCGAAACTCTCCGGCTCTTTTCCCTTCCTCCCGC CTCCCGCCTGAAAACCTCAAAGTATTCGTTTTGTATGCGTGCATGTGCAC AACCAATCCAAAACGCACCGAAACCAGAGTCGCGCCCGCAAAAATAATCG TGTCACGCGCAAGCAGAGGGGTTGGTGGGTGGGTGGGTGTGGGGGCCCCA CAGAGAGGAACCCTTCTGTGTGACACACGGACCAGAGAGAGCTCTGGCAT GGCACGAAACGAATGTCCCTAGCAAGCGCTGGTTTGTTTTATGTAAGGGG GAAAAACGCCCCAAGCATAAGCCTCTCCCCGATTTTTTTGTTTGTTTCTC CTCGTTTTTTTTTTTTTTTTATGTGTTCGCGCAGGGAGGCGTGACGCCGC GGCGGTGGCCGAGGATTTCGAGCGGCAGGTGGCGGCGGGCGAGTCGGAGG AGTCTCTGGCAGCCCTAGTCGCGGGGGGGCCAGCTGGTGCAGCCGCCAGG GGTGTCGACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1261:21725..27536-

>mRNA_L-elsbetiae_contig1261.2107.1 ID=mRNA_L-elsbetiae_contig1261.2107.1|Name=mRNA_L-elsbetiae_contig1261.2107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:21725..27536- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCCGGGAGAGACTTTGCAGCTGCACCTGTTCGAGCCCCGATACAA
GCTCATGATGAAGCGGATCGTTAACACGTCTCGAAGATGTTTCCGGGAGA
GACTTTGCAGCTGCACCTGTTCGAGCCCCGATACAAGCTCATGATGAAGC
GGATCGTTAACACGTCTCGAAGATTCGCGTACGTCCCCAACTACTCGGGC
TACGTGGCGTCCAACGGGGACGTGGCACTGATAGCGCAGCTGATTCGCGT
ACGTCCCCAACTACTCGGGCTACGTGGCGTCCAACGGGGACGTGGCACTG
ATAGCGCAGCTGTCCGAGTGCGAATTCCTCAGCGACGGAAGAGTGCTGCT
CGTGGCCAAGCTCACCTCTAGACAGACGGTCACCGATCACTTCGTGGAGG
GGGGGACCCAGGGGCTGCACTACTGCCGCCTCCAGGCCCGCAGCGACGAG
CCCCCCCCGGCCGGGAGCGACCTCGCCGCGAAGCTGGAGGAGCTCCACGG
GAGGACAAGAGGGCTGGCTCGTGGCGTCATCGAGCCCGTCATGTCCGAGT
GCGAATTCCTCAGCGACGGAAGAGTGCTGCTCGTGGCCAAGCTCACCTCT
AGACAGACGGTCACCGATCACTTCGTGGAGGGGGGGACCCAGGGGCTGCA
CTACTGCCGCCTCCAGGCCCGCAGCGACGAGCCCCCCCCGGCCGGGAGCG
ACCTCGCCGCGAAGCTGGAGGAGCTCCACGGGAGGACAAGAGGGCTGGCT
CGTGGCGTCATCGAGCCCGTCATGTCGCAAGTTGTCGACAGATACGGCGA
GATGCCAGCGGACGCGGAAGCCTTCTCCTTGTGGATAACCTCCATCCTGC
CCATGCAGCTGCGCGAGAAACACACGCTGCTCTCCAGCAACTCGACCACC
GCGCGCCTGCTCGCCTGCGAACGCCATCTCATCTCCCTGAACGGGGGCGC
GCCACCGGCTCTGGCCGTCGCAAGTTGTCGACAGATACGGCGAGATGCCA
GCGGACGCGGAAGCCTTCTCCTTGTGGATAACCTCCATCCTGCCCATGCA
GCTGCGCGAGAAACACACGCTGCTCTCCAGCAACTCGACCACCGCGCGCC
TGCTCGCCTGCGAACGCCATCTCATCTCCCTGAACGGGGGCGCGCCACCG
GCTCTGGCCGGGAGGCGTGACGCCGCGGCGGTGGCCGAGGATTTCGAGCG
GCAGGTGGCGGCGGGCGAGTCGGAGGAGTCTCTGGCAGCCCTAGTCGCGG
GGGGGCCAGCTGGTGCAGCCGCCAGGGGTGTCGACCCCGGAGGCGTGACG
CCGCGGCGGTGGCCGAGGATTTCGAGCGGCAGGTGGCGGCGGGCGAGTCG
GAGGAGTCTCTGGCAGCCCTAGTCGCGGGGGGGCCAGCTGGTGCAGCCGC
CAGGGGTGTCGACCCC
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