mRNA_L-elsbetiae_contig1261.2105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A6H5JYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV6_9PHAE) HSP 1 Score: 332 bits (850), Expect = 2.020e-109 Identity = 173/282 (61.35%), Postives = 202/282 (71.63%), Query Frame = 1 Query: 1 MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQALSIARWGEGCRCHYAIAKATKTL------EEDGEIIRSGSTNDVQNSAGTIEKTFKNVSSSXXXXXXXXXXGKEKCTEEGD------------------DWLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYRPGDQVV 774 M +L+ LGAD LCNIV FA GA+IVALL R +RATLAG +ARKHFQA+S+ARWGEGCRC YA+A A L E D + G+ ++S+ + ++ SS K T DWLAF+LRRVGHRA RPSPL+LLQEHY+EDAYRLLSCCILCSRTSGGDTVK+AV AFF+ACPTPTSVL+AD ELR+TLLPLGLNRE+I+KRFAEGFLAS WHDPSELHGCGRFASDSWQIFCLG++RPG+QV+ Sbjct: 1 MNQLQDLGADALCNIVVFATGAEIVALLQAARCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVADAGTKLPRAAVDESDYDHHHGGTDVGARSSSNATDNG--DIDSSDNGDGDDSIGNKPPATGXXXXXXXXXXXXXXXXXXXXADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQVI 280
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: D8LDP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP6_ECTSI) HSP 1 Score: 322 bits (824), Expect = 2.480e-107 Identity = 169/274 (61.68%), Postives = 196/274 (71.53%), Query Frame = 1 Query: 1 MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQALSIARWGEGCRCHYAIAKATKTLEE------DGEIIRSGSTNDVQNSAGTIEKTFKNVSSSXXXXXXXXXXGKEKCTEEGD---------DWLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYRPGDQVVA 777 M +L+ LGAD LCN+V FA GA+IVALL T R +RATL G +ARKHFQA+S+ARWGEGCRC YA+A A L D + G+ +NS +V S XX DWLAF+LRRVGHRA RPSPL+LLQEHY++DAY LLSCCILCSRTSGGDTVK+AV AFF+ACPTPTSVL+AD +LR+TLLPLGLNRE+I+KRFAEGFLAS WHDPSELHGCGRFASDSWQIFCLG++RPG+Q A Sbjct: 1 MNQLQDLGADALCNMVVFATGAEIVALLQTARCIRATLVGPLARKHFQAMSVARWGEGCRCQYAVAAAGTKLPRAAADGSDFDHHHGGTGAGARNSYAADNGDGDDVRSGDKPHTTGNXXXXXXXXXXXXXXXXXXXXADWLAFYLRRVGHRAARPSPLNLLQEHYAKDAYHLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGDLRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQSAA 274
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A835ZF17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF17_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.840e-42 Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1 Query: 376 WLAFFLRRVGHRAMRP--SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747 W A++LRRV H A RP SPLDL+QE ++ +A+ LL+ LCSRTSGG V+ + AF + PTP SVLSAD LR LLPLGLNRE + RFA F PW DPSELHGCG+ A+DSW+IFCLG Sbjct: 33 WSAYYLRRVSHVAARPPLSPLDLVQERHARNAFTLLASVQLCSRTSGGALVRGVIDAFMELYPTPQSVLSADAAALRALLLPLGLNRERTLARFALEFATKPWRDPSELHGCGKLAADSWRIFCLG 158
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: K0R6H7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6H7_THAOC) HSP 1 Score: 134 bits (336), Expect = 3.230e-34 Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 373 DWLAFFLRRVGHRAMRP--SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDP--SELHGCGRFASDSWQIFCLGSYR 756 DW +F R + SPLDL+QE Y++D +R+LS CIL SRTSGG ++ ++ FF+A P+PT+V++ D ++ L PLGLNRE MKRFA FL+ W D S LHGCG FA +SW +FC G Y+ Sbjct: 95 DWYKYFCNRSASARLPSECSPLDLIQERYADDPFRMLSSCILASRTSGGFIIRRVISDFFEAYPSPTAVINGDTNDMATMLHPLGLNRERTMKRFAIDFLSPEWTDGRVSRLHGCGNFAQNSWDVFCHGRYQ 226
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A7S2PHI3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PHI3_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.360e-34 Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 1 Query: 376 WLAFFLRRVGHRAM--RPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756 W ++ R + + S LDL+QE Y D Y+LLS CILCSRTSG V++ V AFF+ TP+ +LS D + + L PLGLNRE MK+FA+GFL PW SELHGCG FAS S+ IFC G ++ Sbjct: 31 WYEYYRHRCSWMPLPRQKSKLDLIQEDYGHDPYKLLSACILCSRTSGSQNVRDVVKAFFEKYKTPSDILSGDIATIEKELKPLGLNREKTMKKFAQGFLR-PWTQVSELHGCGAFASSSFDIFCRGDFK 158
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A7S4MVC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVC1_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.350e-32 Identity = 67/140 (47.86%), Postives = 88/140 (62.86%), Query Frame = 1 Query: 346 KEKCTEEGDDWLAFFLRRVGHRAMRP---SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756 +E G +W ++ R R P SPLDL+QE + DA+ LLS CILCSRTSG D +++++A F TPT V+ AD+ LRE LLPLGLNRE ++RFA FL+ W S+LHGCG FA S ++FC G +R Sbjct: 91 EELLPARGCEWFRYYRLRASLRWDMPPVSSPLDLIQERHRSDAWSLLSTCILCSRTSGSDKIRSSIAEFHATYRTPTDVVRADESILREMLLPLGLNRERTLRRFAIEFLSLEWRHVSDLHGCGAFADASHRVFCRGKWR 230
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A2P6VFC8_9CHLO (DNA glycosylase isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFC8_9CHLO) HSP 1 Score: 120 bits (302), Expect = 4.460e-29 Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 376 WLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGL--NREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747 W A+ R+ + PSPLDL+QEH+++ ++ + C+LCSRT+GG V+ A+ F PTP+ VL+A + L + PLGL +R ++ A GFLA+ W +PS+ HGCG+F SDS+ IFC G Sbjct: 64 WAAWTKHRLCAASHPPSPLDLIQEHFTDCPFQHMVACVLCSRTTGGPVVRQAIQLFLLLYPTPSDVLAAGDDSLLAVMHPLGLGASRLAAVRSIAHGFLATDWQEPSQFHGCGKFVSDSYHIFCRG 189
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A5A8DJ41_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ41_CAFRO) HSP 1 Score: 115 bits (287), Expect = 3.240e-28 Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 424 SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEE----LRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756 SP+ + QE Y D ++LLS C+L SRTSGGD V + AFF+ PTPT+VL + + E L PLGLNRE + R AEGFL W PSEL+GCG+FA DSW FC G R Sbjct: 3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLRV-WDRPSELYGCGKFAEDSWLAFCHGEVR 116
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A383WAV0_TETOB (F-box domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WAV0_TETOB) HSP 1 Score: 119 bits (298), Expect = 9.830e-28 Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 1 Query: 376 WLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLN--REVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747 W + +R+ + +R SPL LLQE Y D + ++CC+LCSRTSG T+++ +A FF+A P+P++ L + + L PLGL R ++ A+GFL + W DPSE GCG+F SDSW+IFC G Sbjct: 113 WQHYCCKRMSLKTIRSSPLSLLQEAYP-DPWMHITCCVLCSRTSGSATIRSCIARFFQAFPSPSACLQGCPQAMAVLLHPLGLMQARLAAVRAVAQGFLGTDWQDPSEFKGCGKFVSDSWRIFCKG 237
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A5A8D4V5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4V5_CAFRO) HSP 1 Score: 115 bits (287), Expect = 2.880e-27 Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1 Query: 424 SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEE----LRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756 SP+ + QE Y D ++LLS C+L SRTSGGD V + AFF+ PTPT+VL + + E L PLGLNRE + R AEGFL W PSEL+GCG+FA DSW FC G R Sbjct: 3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLRV-WDRPSELYGCGKFAEDSWLAFCHGEVR 116 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1261.2105.1 >prot_L-elsbetiae_contig1261.2105.1 ID=prot_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQALback to top mRNA from alignment at L-elsbetiae_contig1261:9927..12224- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1261.2105.1 ID=mRNA_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2298bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:9927..12224- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1261:9927..12224- >mRNA_L-elsbetiae_contig1261.2105.1 ID=mRNA_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:9927..12224- (Laminarionema elsbetiae ELsaHSoW15)back to top |