mRNA_L-elsbetiae_contig1261.2105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1261.2105.1
Unique NamemRNA_L-elsbetiae_contig1261.2105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A6H5JYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV6_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 2.020e-109
Identity = 173/282 (61.35%), Postives = 202/282 (71.63%), Query Frame = 1
Query:    1 MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQALSIARWGEGCRCHYAIAKATKTL------EEDGEIIRSGSTNDVQNSAGTIEKTFKNVSSSXXXXXXXXXXGKEKCTEEGD------------------DWLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYRPGDQVV 774
            M +L+ LGAD LCNIV FA GA+IVALL   R +RATLAG +ARKHFQA+S+ARWGEGCRC YA+A A   L      E D +    G+    ++S+   +    ++ SS           K   T                      DWLAF+LRRVGHRA RPSPL+LLQEHY+EDAYRLLSCCILCSRTSGGDTVK+AV AFF+ACPTPTSVL+AD  ELR+TLLPLGLNRE+I+KRFAEGFLAS WHDPSELHGCGRFASDSWQIFCLG++RPG+QV+
Sbjct:    1 MNQLQDLGADALCNIVVFATGAEIVALLQAARCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVADAGTKLPRAAVDESDYDHHHGGTDVGARSSSNATDNG--DIDSSDNGDGDDSIGNKPPATGXXXXXXXXXXXXXXXXXXXXADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQVI 280          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: D8LDP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP6_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 2.480e-107
Identity = 169/274 (61.68%), Postives = 196/274 (71.53%), Query Frame = 1
Query:    1 MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQALSIARWGEGCRCHYAIAKATKTLEE------DGEIIRSGSTNDVQNSAGTIEKTFKNVSSSXXXXXXXXXXGKEKCTEEGD---------DWLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYRPGDQVVA 777
            M +L+ LGAD LCN+V FA GA+IVALL T R +RATL G +ARKHFQA+S+ARWGEGCRC YA+A A   L        D +    G+    +NS         +V S         XX                   DWLAF+LRRVGHRA RPSPL+LLQEHY++DAY LLSCCILCSRTSGGDTVK+AV AFF+ACPTPTSVL+AD  +LR+TLLPLGLNRE+I+KRFAEGFLAS WHDPSELHGCGRFASDSWQIFCLG++RPG+Q  A
Sbjct:    1 MNQLQDLGADALCNMVVFATGAEIVALLQTARCIRATLVGPLARKHFQAMSVARWGEGCRCQYAVAAAGTKLPRAAADGSDFDHHHGGTGAGARNSYAADNGDGDDVRSGDKPHTTGNXXXXXXXXXXXXXXXXXXXXADWLAFYLRRVGHRAARPSPLNLLQEHYAKDAYHLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGDLRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQSAA 274          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A835ZF17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF17_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.840e-42
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  376 WLAFFLRRVGHRAMRP--SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747
            W A++LRRV H A RP  SPLDL+QE ++ +A+ LL+   LCSRTSGG  V+  + AF +  PTP SVLSAD   LR  LLPLGLNRE  + RFA  F   PW DPSELHGCG+ A+DSW+IFCLG
Sbjct:   33 WSAYYLRRVSHVAARPPLSPLDLVQERHARNAFTLLASVQLCSRTSGGALVRGVIDAFMELYPTPQSVLSADAAALRALLLPLGLNRERTLARFALEFATKPWRDPSELHGCGKLAADSWRIFCLG 158          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: K0R6H7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6H7_THAOC)

HSP 1 Score: 134 bits (336), Expect = 3.230e-34
Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  373 DWLAFFLRRVGHRAMRP--SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDP--SELHGCGRFASDSWQIFCLGSYR 756
            DW  +F  R     +    SPLDL+QE Y++D +R+LS CIL SRTSGG  ++  ++ FF+A P+PT+V++ D  ++   L PLGLNRE  MKRFA  FL+  W D   S LHGCG FA +SW +FC G Y+
Sbjct:   95 DWYKYFCNRSASARLPSECSPLDLIQERYADDPFRMLSSCILASRTSGGFIIRRVISDFFEAYPSPTAVINGDTNDMATMLHPLGLNRERTMKRFAIDFLSPEWTDGRVSRLHGCGNFAQNSWDVFCHGRYQ 226          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A7S2PHI3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PHI3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.360e-34
Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  376 WLAFFLRRVGHRAM--RPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756
            W  ++  R     +  + S LDL+QE Y  D Y+LLS CILCSRTSG   V++ V AFF+   TP+ +LS D   + + L PLGLNRE  MK+FA+GFL  PW   SELHGCG FAS S+ IFC G ++
Sbjct:   31 WYEYYRHRCSWMPLPRQKSKLDLIQEDYGHDPYKLLSACILCSRTSGSQNVRDVVKAFFEKYKTPSDILSGDIATIEKELKPLGLNREKTMKKFAQGFLR-PWTQVSELHGCGAFASSSFDIFCRGDFK 158          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A7S4MVC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVC1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.350e-32
Identity = 67/140 (47.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  346 KEKCTEEGDDWLAFFLRRVGHRAMRP---SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756
            +E     G +W  ++  R   R   P   SPLDL+QE +  DA+ LLS CILCSRTSG D +++++A F     TPT V+ AD+  LRE LLPLGLNRE  ++RFA  FL+  W   S+LHGCG FA  S ++FC G +R
Sbjct:   91 EELLPARGCEWFRYYRLRASLRWDMPPVSSPLDLIQERHRSDAWSLLSTCILCSRTSGSDKIRSSIAEFHATYRTPTDVVRADESILREMLLPLGLNRERTLRRFAIEFLSLEWRHVSDLHGCGAFADASHRVFCRGKWR 230          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A2P6VFC8_9CHLO (DNA glycosylase isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFC8_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 4.460e-29
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  376 WLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGL--NREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747
            W A+   R+   +  PSPLDL+QEH+++  ++ +  C+LCSRT+GG  V+ A+  F    PTP+ VL+A  + L   + PLGL  +R   ++  A GFLA+ W +PS+ HGCG+F SDS+ IFC G
Sbjct:   64 WAAWTKHRLCAASHPPSPLDLIQEHFTDCPFQHMVACVLCSRTTGGPVVRQAIQLFLLLYPTPSDVLAAGDDSLLAVMHPLGLGASRLAAVRSIAHGFLATDWQEPSQFHGCGKFVSDSYHIFCRG 189          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A5A8DJ41_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ41_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 3.240e-28
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  424 SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEE----LRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756
            SP+ + QE Y  D ++LLS C+L SRTSGGD V   + AFF+  PTPT+VL   +      + E L PLGLNRE  + R AEGFL   W  PSEL+GCG+FA DSW  FC G  R
Sbjct:    3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLRV-WDRPSELYGCGKFAEDSWLAFCHGEVR 116          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A383WAV0_TETOB (F-box domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WAV0_TETOB)

HSP 1 Score: 119 bits (298), Expect = 9.830e-28
Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  376 WLAFFLRRVGHRAMRPSPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELRETLLPLGLN--REVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLG 747
            W  +  +R+  + +R SPL LLQE Y  D +  ++CC+LCSRTSG  T+++ +A FF+A P+P++ L    + +   L PLGL   R   ++  A+GFL + W DPSE  GCG+F SDSW+IFC G
Sbjct:  113 WQHYCCKRMSLKTIRSSPLSLLQEAYP-DPWMHITCCVLCSRTSGSATIRSCIARFFQAFPSPSACLQGCPQAMAVLLHPLGLMQARLAAVRAVAQGFLGTDWQDPSEFKGCGKFVSDSWRIFCKG 237          
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Match: A0A5A8D4V5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4V5_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 2.880e-27
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  424 SPLDLLQEHYSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEE----LRETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGSYR 756
            SP+ + QE Y  D ++LLS C+L SRTSGGD V   + AFF+  PTPT+VL   +      + E L PLGLNRE  + R AEGFL   W  PSEL+GCG+FA DSW  FC G  R
Sbjct:    3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLRV-WDRPSELYGCGKFAEDSWLAFCHGEVR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1261.2105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JYV6_9PHAE2.020e-10961.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDP6_ECTSI2.480e-10761.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZF17_9STRA2.840e-4259.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0R6H7_THAOC3.230e-3448.48Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2PHI3_9STRA3.360e-3450.39Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4MVC1_9STRA4.350e-3247.86Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2P6VFC8_9CHLO4.460e-2943.65DNA glycosylase isoform A n=1 Tax=Micractinium con... [more]
A0A5A8DJ41_CAFRO3.240e-2852.17Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A383WAV0_TETOB9.830e-2844.44F-box domain-containing protein n=1 Tax=Tetradesmu... [more]
A0A5A8D4V5_CAFRO2.880e-2752.17Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1261contigL-elsbetiae_contig1261:9927..12224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue3.3e-85
Seed eggNOG ortholog2880.D8LDP6
Preferred nameMBD4
KEGG koko:K10801
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000700,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008263,GO:0008630,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0012501,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022402,GO:0023052,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044773,GO:0044774,GO:0044818,GO:0045008,GO:0045786,GO:0045930,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1990837
EggNOG free text desc.domain protein
EggNOG OGsKOG4161@1,KOG4161@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Ec32 ortholog descriptionDNA glycosylase
Ec32 orthologEc-19_001460.1
Exons4
Model size777
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1261.2105.1prot_L-elsbetiae_contig1261.2105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1261 9927..12224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.390117-CDS-L-elsbetiae_contig1261:9926..100741622815452.390117-CDS-L-elsbetiae_contig1261:9926..10074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 9927..10074 -
1691682904.8431067-CDS-L-elsbetiae_contig1261:9926..100741691682904.8431067-CDS-L-elsbetiae_contig1261:9926..10074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 9927..10074 -
1622815452.407352-CDS-L-elsbetiae_contig1261:10334..105191622815452.407352-CDS-L-elsbetiae_contig1261:10334..10519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 10335..10519 -
1691682904.8563325-CDS-L-elsbetiae_contig1261:10334..105191691682904.8563325-CDS-L-elsbetiae_contig1261:10334..10519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 10335..10519 -
1622815452.4205594-CDS-L-elsbetiae_contig1261:11047..113961622815452.4205594-CDS-L-elsbetiae_contig1261:11047..11396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 11048..11396 -
1691682904.8714588-CDS-L-elsbetiae_contig1261:11047..113961691682904.8714588-CDS-L-elsbetiae_contig1261:11047..11396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 11048..11396 -
1622815452.5042367-CDS-L-elsbetiae_contig1261:12129..122241622815452.5042367-CDS-L-elsbetiae_contig1261:12129..12224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 12130..12224 -
1691682904.8796408-CDS-L-elsbetiae_contig1261:12129..122241691682904.8796408-CDS-L-elsbetiae_contig1261:12129..12224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1261 12130..12224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1261.2105.1

>prot_L-elsbetiae_contig1261.2105.1 ID=prot_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
MAKLESLGADPLCNIVAFALGADIVALLATGRHVRATLAGSVARKHFQAL
SIARWGEGCRCHYAIAKATKTLEEDGEIIRSGSTNDVQNSAGTIEKTFKN
VSSSNSSSSSSSSSGKEKCTEEGDDWLAFFLRRVGHRAMRPSPLDLLQEH
YSEDAYRLLSCCILCSRTSGGDTVKNAVAAFFKACPTPTSVLSADQEELR
ETLLPLGLNREVIMKRFAEGFLASPWHDPSELHGCGRFASDSWQIFCLGS
YRPGDQVVA
back to top

mRNA from alignment at L-elsbetiae_contig1261:9927..12224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1261.2105.1 ID=mRNA_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2298bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:9927..12224- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGCTGGAGAGTCTCGGGGCCGACCCGCTCTGCAACATCGTGGC CTTCGCACTCGGAGCGGATATCGTGGCGCTTTTGGCCACTGGCAGGTGCG CCCATAAGGATAACCCACTCAGTACGCAGTACGCCACGCACCCACCACGA CTCTAATTTCCAATCTGATTTTATTTGACACATGATGTGCTCTCGCACGC TGTGCATGTGTGCATGTACCGGTACGTGTCTCTATCGTGACTTCGCTTTT CGCGGCAGTTAGACTACATAGTTGCACGCATATCCCTTTTTTTCTTTTTT CGAATTGATAAGATAAACTTGGTGCCATGCCTGTTTTAGAAACACTCTGT TGTTACCTACGTAGTGCCGGTGCTGCGTTCGGTCGGCTCTGCGTCATCAG ATGTCAAACCTCACACCAGCAGGTCAAAACCGCATAGACTGCACAAGTAC CCACGAGCAGTAGCAGCGTATATTTAGACCAGCGTCGCTGCGTACGGTAA TGGATACACTGCTGAAAAACATCACTACTGTACTATATTTTCTGCATGGT ATGCGTACGGCATTTAGTCTATCCCACAAGCCTCGAAACACACGCGGCGA AATGTCGTGCACCTCTGGCCTCTGGCAACGTTTTCGGAGTCTAGGATGAG AGTTAGATAGACATACACATGCATAGACTACTACTGTACACACGTGTAGA CCATCAGCTTTCGACAGACCCCAAGAATATCCCAATACCATCTGCGCGCC ACACCGCACAACCGCAAGATGCAAGACCAACATGTGATTGCTCCGAACCC GCGCGGATGTTTGTTGGGCGTGTTCAAGGCACGTTCGGGCCACACTGGCG GGATCTGTTGCGCGAAAGCACTTCCAGGCGCTGAGCATCGCGCGGTGGGG GGAAGGCTGTCGCTGCCACTATGCCATCGCCAAAGCCACCAAAACCTTAG AAGAGGACGGCGAAATCATTCGTTCCGGCAGCACCAACGATGTCCAAAAC AGCGCCGGCACCATCGAAAAAACCTTCAAAAACGTCAGCAGCAGCAACAG CAGCAGCAGCAGCAGCAGCAGCAGCGGCAAGGAGAAATGCACCGAGGAGG GTGATGATTGGTTGGCGTTTTTCCTGAGACGCGTGGGGCACCGAGCTATG CGGCCCTCTCCGCTTGACCTTCTGCAGGTAAAGAGCTTGCGCACCGGCGA CGTACTCGTGGACAGCAGTTGCACGCGCGTTGCCTGAACACCCGTACGAT ACCGCCGAGTTGCTTGCATGTTGTGCTTGCGTAGTCTAACAGGCCCTGCC TGACCGAGAGCGACGTCGACCCGCGCGCCCGAAACAGGATCCGATCGCGA AGCAGATGGCTTCGAGAGTCGCCGCTATGAATTTAGAGTCGTTGGCCGGA GTATGTTGAGTGTGGCCGCGTGGTTGGAAGCCAAATGCCTCTCAAGCGGC CTACCCTCGACTCCTCCGCAAATGAACAACGCAACCAAGCTAGCGCCGCA CATATCATCACTCTCGCTTTCGGAAATTAGTGGCAATATAATAACCTTGT CTCGACAGTGATTTTTTTCCGTTCTACCCTCAAGTGTAAACATCTCCCCC CACCGGCTAGACATGTGGTGTTCGGCTGGATATAACGAATGTGGGTCGCT TCTCCGTCATGCCTTCCATACTGCACCCCGTCGTTAAACCCCACCACCTT TTCAGGAGCACTACTCAGAGGATGCCTACCGGCTTCTGTCCTGCTGCATC CTTTGCTCACGCACCAGCGGGGGAGACACCGTGAAAAATGCAGTCGCGGC CTTTTTCAAGGCGTGTCCGACGCCAACCAGTGTTTTGTCCGCGGACCAGG AGGAGCTACGGGAGACACTGCTGCCTCTCGGGCTCAACAGGTGCCTATCC ACCTCTCTTTTCACACCCACGCATGAACGAACACGCCCTTCCTTCGGCGT TGATTCGCAGCCTGTGCTTTAGTATGGAAACCTAGTTCTGTCTAACTCGA CTTGAGCTTTGACCTGCACAACAGCGGCAGTATAGACAACGCGCCGTTTT CCCTCCGATTTCTCGACGACGCCCTCCTCCCCCTGCTTTTTCCTGGCGCT CTCTTCGCCCGTTTGAACCCCATTCCGCCACTGATTCCCCAAACGGAAAG GGAGGTGATCATGAAGCGCTTCGCCGAAGGCTTTCTTGCGTCACCGTGGC ACGATCCCTCTGAGCTGCACGGTTGCGGCCGGTTCGCGTCTGACTCCTGG CAAATATTTTGCCTCGGCAGCTACCGCCCAGGAGACCAGGTCGTCGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1261:9927..12224-

>mRNA_L-elsbetiae_contig1261.2105.1 ID=mRNA_L-elsbetiae_contig1261.2105.1|Name=mRNA_L-elsbetiae_contig1261.2105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig1261:9927..12224- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAAGCTGGAGAGTCTCGGGGCCGACCCGCTCTGCAACATCGTGGC
CTTCGCACTCGGAGCGGATATCGTGGCGCTTTTGGCCACTGGCAGATGGC
CAAGCTGGAGAGTCTCGGGGCCGACCCGCTCTGCAACATCGTGGCCTTCG
CACTCGGAGCGGATATCGTGGCGCTTTTGGCCACTGGCAGGCACGTTCGG
GCCACACTGGCGGGATCTGTTGCGCGAAAGCACTTCCAGGCGCTGAGCAT
CGCGCGGTGGGGGGAAGGCTGTCGCTGCCACTATGCCATCGCCAAAGCCA
CCAAAACCTTAGAAGAGGACGGCGAAATCATTCGTTCCGGCAGCACCAAC
GATGTCCAAAACAGCGCCGGCACCATCGAAAAAACCTTCAAAAACGTCAG
CAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAAGGAGAAAT
GCACCGAGGAGGGTGATGATTGGTTGGCGTTTTTCCTGAGACGCGTGGGG
CACCGAGCTATGCGGCCCTCTCCGCTTGACCTTCTGCAGGCACGTTCGGG
CCACACTGGCGGGATCTGTTGCGCGAAAGCACTTCCAGGCGCTGAGCATC
GCGCGGTGGGGGGAAGGCTGTCGCTGCCACTATGCCATCGCCAAAGCCAC
CAAAACCTTAGAAGAGGACGGCGAAATCATTCGTTCCGGCAGCACCAACG
ATGTCCAAAACAGCGCCGGCACCATCGAAAAAACCTTCAAAAACGTCAGC
AGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAAGGAGAAATG
CACCGAGGAGGGTGATGATTGGTTGGCGTTTTTCCTGAGACGCGTGGGGC
ACCGAGCTATGCGGCCCTCTCCGCTTGACCTTCTGCAGGAGCACTACTCA
GAGGATGCCTACCGGCTTCTGTCCTGCTGCATCCTTTGCTCACGCACCAG
CGGGGGAGACACCGTGAAAAATGCAGTCGCGGCCTTTTTCAAGGCGTGTC
CGACGCCAACCAGTGTTTTGTCCGCGGACCAGGAGGAGCTACGGGAGACA
CTGCTGCCTCTCGGGCTCAACAGGAGCACTACTCAGAGGATGCCTACCGG
CTTCTGTCCTGCTGCATCCTTTGCTCACGCACCAGCGGGGGAGACACCGT
GAAAAATGCAGTCGCGGCCTTTTTCAAGGCGTGTCCGACGCCAACCAGTG
TTTTGTCCGCGGACCAGGAGGAGCTACGGGAGACACTGCTGCCTCTCGGG
CTCAACAGGGAGGTGATCATGAAGCGCTTCGCCGAAGGCTTTCTTGCGTC
ACCGTGGCACGATCCCTCTGAGCTGCACGGTTGCGGCCGGTTCGCGTCTG
ACTCCTGGCAAATATTTTGCCTCGGCAGCTACCGCCCAGGAGACCAGGTC
GTCGCTGGAGGTGATCATGAAGCGCTTCGCCGAAGGCTTTCTTGCGTCAC
CGTGGCACGATCCCTCTGAGCTGCACGGTTGCGGCCGGTTCGCGTCTGAC
TCCTGGCAAATATTTTGCCTCGGCAGCTACCGCCCAGGAGACCAGGTCGT
CGCT
back to top