mRNA_L-elsbetiae_contig126.2095.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig126.2095.1
Unique NamemRNA_L-elsbetiae_contig126.2095.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig126.2095.1 vs. uniprot
Match: D8LTB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.200e-35
Identity = 89/127 (70.08%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    1 AAISRAVEAVLPDGMVATDETIEAINKGCAAEFVSLVSTEASADVSKAEKNMTMSKKDVVDAIKRLGLESYLAGAEEQAVMDTERVQEKRXXXXXXXXXXXXXAVAATRQRELLEATAKRFYDDQGL 381
            A I+RAVEA LPDGM ATDE +EAINK CA EFV+L+STEASA    + KN  MS +DVV+AIKRLGLE+YL GAEE A  DTE+     XXXXXXXXXXXXX   A RQRELLEATAK FY+DQGL
Sbjct:    6 ATIARAVEAALPDGMTATDEMVEAINKSCA-EFVNLLSTEASAKAKCSGKNPVMSNEDVVEAIKRLGLEAYLTGAEEGAAADTEKXXXXXXXXXXXXXXXXXXXXXANRQRELLEATAKSFYEDQGL 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig126.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTB7_ECTSI1.200e-3570.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig126contigL-elsbetiae_contig126:25998..28024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone-fold
Ec32 orthologEc-12_005970.1
Exons4
Model size384
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig126.2095.1prot_L-elsbetiae_contig126.2095.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig126 25998..28024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815450.955066-CDS-L-elsbetiae_contig126:25997..261081622815450.955066-CDS-L-elsbetiae_contig126:25997..26108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 25998..26108 -
1691682904.4049928-CDS-L-elsbetiae_contig126:25997..261081691682904.4049928-CDS-L-elsbetiae_contig126:25997..26108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 25998..26108 -
1622815450.96613-CDS-L-elsbetiae_contig126:26750..268311622815450.96613-CDS-L-elsbetiae_contig126:26750..26831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 26751..26831 -
1691682904.415165-CDS-L-elsbetiae_contig126:26750..268311691682904.415165-CDS-L-elsbetiae_contig126:26750..26831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 26751..26831 -
1622815450.9750636-CDS-L-elsbetiae_contig126:27348..274491622815450.9750636-CDS-L-elsbetiae_contig126:27348..27449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 27349..27449 -
1691682904.4239821-CDS-L-elsbetiae_contig126:27348..274491691682904.4239821-CDS-L-elsbetiae_contig126:27348..27449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 27349..27449 -
1622815450.9919138-CDS-L-elsbetiae_contig126:27933..280241622815450.9919138-CDS-L-elsbetiae_contig126:27933..28024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 27934..28024 -
1691682904.4353886-CDS-L-elsbetiae_contig126:27933..280241691682904.4353886-CDS-L-elsbetiae_contig126:27933..28024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig126 27934..28024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig126.2095.1

>prot_L-elsbetiae_contig126.2095.1 ID=prot_L-elsbetiae_contig126.2095.1|Name=mRNA_L-elsbetiae_contig126.2095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
AAISRAVEAVLPDGMVATDETIEAINKGCAAEFVSLVSTEASADVSKAEK
NMTMSKKDVVDAIKRLGLESYLAGAEEQAVMDTERVQEKRKKKRKQKQSK
EEEAVAATRQRELLEATAKRFYDDQGL*
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mRNA from alignment at L-elsbetiae_contig126:25998..28024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig126.2095.1 ID=mRNA_L-elsbetiae_contig126.2095.1|Name=mRNA_L-elsbetiae_contig126.2095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2027bp|location=Sequence derived from alignment at L-elsbetiae_contig126:25998..28024- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCATTTCTCGTGCCGTGGAGGCTGTGCTTCCTGATGGTATGGTGGC
CACGGATGAGACGATAGAAGCGATTAACAAGGGCTGCGCCGGTGAGGCGG
GGGTCCTCGCAGAAAGTACGCAATTTCATGTTTTTGTGTCACACCAGGTA
CTTCCGCAGGCCTTAGCATCGAAAACGTTGCAGGGGGCACTCCGTTGTAT
TGGAGGTTGCTGCGATACATCAGCTTCGGTTGTTTGAATCGGCTGCTGCT
CTACAAGCCGCGATCCGCTACCCGACAGCGATGGGTTTATCTCGTGTCAT
ACGGCAGCAGCAAGAGAGGCAAAGCCTCTTCAATCATGTTGTTTTCGCTT
TGACTGCCTTTCCCAGGCACCATTTTTCCAACTACGGTATGCGGAAGCTT
CGCGTGCTCGTTTTTGAACCCGGGCAGCAATAGTTCGAGATCTTGGCTGA
ACGGTTTCGACCACATCGAGGATGGAAACGTAAAAGTTGAACCTTGCTTC
CGTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCCGCTTCATGTTCGTACTA
CCGATGCTGATGTTTTATGGTTGAGCAGAATTCGTGAGCTTGGTGTCGAC
CGAGGCGTCAGCCGATGTAAGCAAGGCGGAAAAAAATATGACCATGTCCA
AAAAAGACGTGGTGGATGCTATCAAGGTATGCGAGGACTACAGGCATCAT
TTCGTTTGTTTCGGTGCCCCCGCGGAGGTTGTCTAGAATGTCATACATAG
GGTAGCTGCTCACTTTTGTATTTCTAGGTTGCAACACATGCAGCGGCACA
CCGGGCGCCCGGCGTGTTCCTGCGGACTAGCTTTCTACCTCGGACATAAA
TGTGACTATTTCCGACAGCCTGTGGTTGTTGATTTGGCGAGGATGATCGA
AAAATGCGGTCTTCGGCCCTAGTTGCAGGTGTGGTTTTAGCGGTAAGTAT
GTACGTGTACCGACCTGCGCTCGAACTTTATGAAAGTCAAGCCGGGCTGG
GTAGCAAAAGCGATGGTGACGATAAGCTTCGTATTCTAAGCGAGGTGTTG
GTGTTGTATACACATACATACGCACTAAATTCGACCAAACCAACGTGCTT
GAGAAAATGCCACACTCTGTGTAAGGCGCTCGTTTTTTGCTTGTGTCGCC
GCTTGCTTTGTGGGCTGCTGCCGTGCCTGTCGGCTTCGGGCAGAGGCTTG
GGCTCGAGAGCTACCTGGCCGGCGCGGAGGAACAGGCGGTGATGGACACG
GAACGAGTGCAAGAAAAACGAAAGGTACAGAAGCACCTTTACAGACTTCC
CTCGCACCTGCCGCGAACACTACTGTTCCACGTTCCGGTGCTGCATCCTA
GCATTTATCTCCTACATGCATCGGTCGCCGGTCGTTTGTTTGTGCCCAGT
GCTGGTTTTGTATTGTTAAGTCCAGTGCGTAGGTGTTCAGTTTTTTGCAA
GTCACGGACCCAGGTCTACGGTTTATTTACTCCCGATGGGGCGAGAAGGG
CCTTCCACACCTTCGTCGTCGATCGGTAGGGCTTGCCGCCCGTATCCCGG
TATCCATAACACACTTGTCAACACAGGTCATGTTTTCTCCAATGGCTTGT
ATTTTGCCGCTTGCAACTGCGAGATCTTTCCACGGGGGGACGCATTGCAT
TCGATTGAAAAATACCCTCTACGAAATGCTTGTCTGACACTTCTTCTACG
TCGAATTACGTGTAGTTTACTAACTCGCGCCTGCTTTCTGCACCCGCAGA
GCGCTGAATTTTCCACGAATTTTCGCTACCACGTCATTGATGGGCGTGGC
GGCGTAAACCCTTTCTCATGCCAAATAAATCCACCACCTGGCTTGGCTTT
TTGGCGTGACCAACCGTGCAGCTCTCCCGTCGCGCTTTTCCCCTCCGCCT
CGCATTTGCTATATAGAAGAAGAGAAAGCAAAAGCAATCCAAAGAAGAGG
AGGCGGTAGCGGCGACCCGGCAACGGGAGTTGCTGGAGGCCACGGCCAAG
AGATTCTACGACGACCAAGGATTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig126:25998..28024-

>mRNA_L-elsbetiae_contig126.2095.1 ID=mRNA_L-elsbetiae_contig126.2095.1|Name=mRNA_L-elsbetiae_contig126.2095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig126:25998..28024- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCATTTCTCGTGCCGTGGAGGCTGTGCTTCCTGATGGTATGGTGGC
CACGGATGAGACGATAGAAGCGATTAACAAGGGCTGCGCCGGCCGCCATT
TCTCGTGCCGTGGAGGCTGTGCTTCCTGATGGTATGGTGGCCACGGATGA
GACGATAGAAGCGATTAACAAGGGCTGCGCCGCAGAATTCGTGAGCTTGG
TGTCGACCGAGGCGTCAGCCGATGTAAGCAAGGCGGAAAAAAATATGACC
ATGTCCAAAAAAGACGTGGTGGATGCTATCAAGCAGAATTCGTGAGCTTG
GTGTCGACCGAGGCGTCAGCCGATGTAAGCAAGGCGGAAAAAAATATGAC
CATGTCCAAAAAAGACGTGGTGGATGCTATCAAGAGGCTTGGGCTCGAGA
GCTACCTGGCCGGCGCGGAGGAACAGGCGGTGATGGACACGGAACGAGTG
CAAGAAAAACGAAAGAGGCTTGGGCTCGAGAGCTACCTGGCCGGCGCGGA
GGAACAGGCGGTGATGGACACGGAACGAGTGCAAGAAAAACGAAAGAAGA
AGAGAAAGCAAAAGCAATCCAAAGAAGAGGAGGCGGTAGCGGCGACCCGG
CAACGGGAGTTGCTGGAGGCCACGGCCAAGAGATTCTACGACGACCAAGG
ATTGTAGAAGAAGAGAAAGCAAAAGCAATCCAAAGAAGAGGAGGCGGTAG
CGGCGACCCGGCAACGGGAGTTGCTGGAGGCCACGGCCAAGAGATTCTAC
GACGACCAAGGATTGTAG
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