mRNA_L-elsbetiae_contig12566.2075.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12566.2075.1
Unique NamemRNA_L-elsbetiae_contig12566.2075.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12566.2075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12566contigL-elsbetiae_contig12566:2027..5139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.6475716-CDS-L-elsbetiae_contig12566:2026..22861622815448.6475716-CDS-L-elsbetiae_contig12566:2026..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12566 2027..2286 -
1691682903.2243538-CDS-L-elsbetiae_contig12566:2026..22861691682903.2243538-CDS-L-elsbetiae_contig12566:2026..2286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12566 2027..2286 -
1622815448.6627755-CDS-L-elsbetiae_contig12566:5096..51391622815448.6627755-CDS-L-elsbetiae_contig12566:5096..5139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12566 5097..5139 -
1691682903.2330515-CDS-L-elsbetiae_contig12566:5096..51391691682903.2330515-CDS-L-elsbetiae_contig12566:5096..5139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12566 5097..5139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12566.2075.1prot_L-elsbetiae_contig12566.2075.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12566 2027..5139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12566.2075.1

>prot_L-elsbetiae_contig12566.2075.1 ID=prot_L-elsbetiae_contig12566.2075.1|Name=mRNA_L-elsbetiae_contig12566.2075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
ARRGRGCFFGFCRGELRRDRRTLRRRWRRRRRQRPTPQQHQRQRRRRRTT
GTQRRRLENVAGKRTSNGGLRRITGEEGEGGRDDEGGQGQRCDHQRASVG
*
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mRNA from alignment at L-elsbetiae_contig12566:2027..5139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12566.2075.1 ID=mRNA_L-elsbetiae_contig12566.2075.1|Name=mRNA_L-elsbetiae_contig12566.2075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3113bp|location=Sequence derived from alignment at L-elsbetiae_contig12566:2027..5139- (Laminarionema elsbetiae ELsaHSoW15)
GCTAGACGCGGCCGCGGCTGCTTCTTCGGCTTCTGCCGTGGGGGTGAGTA
TTTTTTCATTATATACGAGTATGTATGTATGGATGTATGCGGCGCAACTT
GTACCTCTTCACGGGCAACTTGTACCTCTTCACGGGAACCGGCACCTATT
TGGCCGGCTGCTTCTCCTGCTCCCCCCTGGACTAGAGCTTTCCAACAACA
GCCACCCCTTTCGGCACTGGCACTCTTCTTGCTGGGGGGGAGGAATAGAG
CTTTGAGAATCTGTCCATGGGGTGTGGTATCTTGTGTCACCTACGGTCCA
CACCAACCGATCCACCCCAAAGTCTAGGAGAGCATTCTCTTTTTCTTTCT
TTTTTTTTAAATCTTCTTCACCTTTATTCTCAGTGCTCGATGGGCTCCTT
GCCACGAGGGCATGCATCTTGCCGGAGTACTGAACCGTGGTTGGTCACAC
AGAAGGGTTTCAGCCGTCCCTTTCCCTCGTCGACGGTTGAGGTCGAAGTT
TGTGTTGGGCTGTCCTAAAATACACACGGTCTAAAACGATGGCAGGTGCT
CATTACCAAATAGGGGTGGGTCGAAATCGGCAACGAGCGCACGCGGTCGA
GCTTCAAAAAAGCCCCGGGGACAAAGCATGTTGGGTCCCGGAATGTACCG
TAGGTGACATAAGATAAGACACCCCCTGGGCCGATTTTCAAAGCTCAAGT
ACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAAAGG
TCTCGCCGAGAGCTTTCCGAAAATGTGGCGTTTGTGGTTAGAATCGTACT
CGTTGTGGAGTAACCGAGCTTTCAAAATCGGTCCAGGGGGTGTCTTATCT
TACGTCACCTACGGTATATAAATATCTCCCAACAGATCAGGACGCATACC
CCCTATTGTACACGCATATATGAGGCGGTACCGACGATACGATAGATATT
ATATGGCGTGCTTAATTTTATTTAGATACATATAGTCTACAAATTGGTGT
CTGGGAACTTATGTTCCGAAATCTGGATCAGTAGGCTATCTGCCTCCAAT
ATTTAGTCCAAAAACGTCAGTATGACAGCAGTTGTTTTGAGCATGGCAGC
ACATGCCAGGAGACTGGGCAGCTATCGTGCCTGATTAGCACAGACCGACA
CAGCTCTGTTTGGTTCAAGGGAGCGGCAGCACAGAAAAGAGGCGTTGTTT
TGGTTGTTTCAGTATGCACAGCAGCTGCTGCTTCAGTGCTCAAAACACAG
CAGCAGCTGCTGTGCTTTTTCAGTTGTAAATTTAGGAGTACTTCTGCTGA
TTGATGATGATTCCTTCGCCTGTTTGCCTTGGTCTTGCATCACCCCCGAC
CGCTGTGCTCTCACTGTGCTCTCATGAGCTCGTTCCGAAAGGATCTTGTA
ATCATTAATTCATTGTTCGCTTTGGGGCAGGTAATATATACTCCCGAGTA
TATAGTTTTCGTGTAAGGGTATTTATGTTGGCACTTTTTTTTTTTCAAGG
GTCTGCCGTTTAGGGGTACAGTAGAAAATCGCTGGCGCAAATCGAGAAAA
AAAAATCGGACCGCCTACGCGAAGAAAATCGTCAAGTTCGGGTTCGTATG
TCGACTAGAGTGATCCGTAACCCTAACCCTAACCACGACCCCCCCCCCCC
ATTCCTCCGATTCCATACTTTATCCCATAGGTTTGGCTGACTGAAAACCT
GCTTAGACTAAATAACGTGAAAAATTCTCCAGGGGGGGGGGGTGGTATGT
TGTGTCACCTACGGTAGTATGTACCATGCCTTTGTGTTTGTTGTGCCAGC
GACAAGCGAAATCCGTCCGGTGCTCAGTTTAGCACCGCCGGGCGCGTACA
TATGAAGTACTAGTCTGTCCGGAAAATAGTTGGGATTTGGAAATCCGGGA
TATAAAAGAGTTCAAAGTTTTAGCAAAAGAAATGACGTTTCCGGGGCTCG
AACCCGCGTTTCAAAATTTGAAGTTTGGGCGAAGATATTGGCTTTCTCGT
CGAATCCCACTTATATTTCCGGACAGAGTGGTACCATATTTTTTGTTTTG
TTTTTCTTCCGCGGCGTCGAGTGTGCCCCCTTAAGTGTTTTGTGGCCACG
GGCGGGGCCCCCAAGGATGCCCTTGGACTATGTATGTAGAGAGCTCATGG
GAGAATCAACAACAACTTTTCGGATGGACGGGTTAAGACAAATCGAGGTG
TGCTTGCTCGGCTGGAAGGGCTACCGTAGGTGACACAAGATACCACACCC
CCTGGATAGACTTTCAAAGCTCGATTCGATTCCTCCTCAGCAAGAAGAGT
GCCAGTGCCAGTGCCAGTGCCGAAAGAGGTGGCATTGAAAAGATCTAGTC
GAGGGCTGTCCGAGCATGTGTTGCTTGGTGCTGGCACCTTCTTCGTTACG
GAGTAATTGAGCTCTACAGTTCGGTCCAGGGGGTGTGGTATCTTGTGTCA
CCTGCGGTAGCCTACGTAGGTTTTTGTTCAGCGAAACATATGGGATAGAG
TATGGAATCGGGGAATGTTTGGGGGGTCGGTGGTTACGGTTAGGGCACCC
CTACTACTCTATTTCACATATAAACCAATATTCCCCGTTTTTTCTCGCGA
AGGCAGTCCGCTGGAAGGGAGGCCCCGGAGCGACTTCTAACGGGAAAGAC
ACACACACACACACACACACACACACACACACACACACATCAACGGAGCG
ACCGTTCGCCCATAGGGCATAAGACACAAAAACACACATCAACGAAATCA
GCGAAACGAAACCTTATGTGTAGCAGCCCCCCGAGAACAGACCGCCGACA
CACCGAAAATGTTTATTTTTATTCTCTTATTTTTTTATTTGATGATGTAC
CAGAGCTCCGACGAGATCGACGGACTCTTCGCCGACGCTGGCGCCGGCGG
CGCCGGCAGCGGCCTACCCCCCAGCAGCACCAGCGCCAACGCCGCCGTCG
ACGCACGACGGGCACTCAACGGCGCCGGCTTGAGAACGTTGCCGGTAAAC
GGACGAGCAATGGCGGGCTCCGCAGGATCACTGGGGAAGAGGGAGAGGGA
GGACGCGATGACGAGGGGGGTCAAGGCCAGCGATGCGATCATCAACGAGC
TTCTGTCGGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12566:2027..5139-

>mRNA_L-elsbetiae_contig12566.2075.1 ID=mRNA_L-elsbetiae_contig12566.2075.1|Name=mRNA_L-elsbetiae_contig12566.2075.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig12566:2027..5139- (Laminarionema elsbetiae ELsaHSoW15)
GCTAGACGCGGCCGCGGCTGCTTCTTCGGCTTCTGCCGTGGGGGCTAGAC
GCGGCCGCGGCTGCTTCTTCGGCTTCTGCCGTGGGGAGCTCCGACGAGAT
CGACGGACTCTTCGCCGACGCTGGCGCCGGCGGCGCCGGCAGCGGCCTAC
CCCCCAGCAGCACCAGCGCCAACGCCGCCGTCGACGCACGACGGGCACTC
AACGGCGCCGGCTTGAGAACGTTGCCGGTAAACGGACGAGCAATGGCGGG
CTCCGCAGGATCACTGGGGAAGAGGGAGAGGGAGGACGCGATGACGAGGG
GGGTCAAGGCCAGCGATGCGATCATCAACGAGCTTCTGTCGGATAGAGCT
CCGACGAGATCGACGGACTCTTCGCCGACGCTGGCGCCGGCGGCGCCGGC
AGCGGCCTACCCCCCAGCAGCACCAGCGCCAACGCCGCCGTCGACGCACG
ACGGGCACTCAACGGCGCCGGCTTGAGAACGTTGCCGGTAAACGGACGAG
CAATGGCGGGCTCCGCAGGATCACTGGGGAAGAGGGAGAGGGAGGACGCG
ATGACGAGGGGGGTCAAGGCCAGCGATGCGATCATCAACGAGCTTCTGTC
GGATAG
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