mRNA_L-elsbetiae_contig12563.2074.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12563.2074.1
Unique NamemRNA_L-elsbetiae_contig12563.2074.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12563.2074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12563contigL-elsbetiae_contig12563:405..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.5730839-UTR-L-elsbetiae_contig12563:404..5441622815448.5730839-UTR-L-elsbetiae_contig12563:404..544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12563 405..544 +
1691682903.2029583-UTR-L-elsbetiae_contig12563:404..5441691682903.2029583-UTR-L-elsbetiae_contig12563:404..544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12563 405..544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.617468-CDS-L-elsbetiae_contig12563:544..9041622815448.617468-CDS-L-elsbetiae_contig12563:544..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12563 545..904 +
1691682903.216247-CDS-L-elsbetiae_contig12563:544..9041691682903.216247-CDS-L-elsbetiae_contig12563:544..904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12563 545..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12563.2074.1prot_L-elsbetiae_contig12563.2074.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12563 545..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12563.2074.1

>prot_L-elsbetiae_contig12563.2074.1 ID=prot_L-elsbetiae_contig12563.2074.1|Name=mRNA_L-elsbetiae_contig12563.2074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MGRTHTHTPSSCSAGRTKVSRQVRQSARQYIYITRCRYLASFAISLAPLF
SFASRLCFGGGFCFRLRRLSRRLQGHRRPPRRARTGRRGTAPPGAGSSRH
VRGAHVAGAGGTRGGRRLRG
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mRNA from alignment at L-elsbetiae_contig12563:405..904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12563.2074.1 ID=mRNA_L-elsbetiae_contig12563.2074.1|Name=mRNA_L-elsbetiae_contig12563.2074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=500bp|location=Sequence derived from alignment at L-elsbetiae_contig12563:405..904+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAATGTTCACCTCCTCCTATGTGACCCCGATTGGTTCTAGTTGTACAG
ACAAATGCACTGCAAAGTGTAGTAAGTACCTCTAAGTACACCGCAAGGTG
TGGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGA
CACACACACACACACCCTCCTCCTGCAGCGCCGGAAGGACAAAGGTTTCG
AGACAGGTAAGGCAAAGCGCCAGACAATATATATATATCACTCGCTGCCG
CTATTTAGCTTCCTTCGCGATATCACTCGCGCCGCTATTTTCCTTCGCGA
GTCGCCTTTGCTTCGGCGGCGGCTTTTGCTTTCGCCTGCGCCGCCTCTCG
CGCCGCCTTCAGGGTCATCGTCGGCCGCCGCGGCGCGCCCGTACCGGCCG
CCGGGGCACCGCTCCCCCCGGCGCCGGTAGCTCCCGACACGTACGAGGAG
CGCACGTTGCCGGCGCTGGCGGCACTCGCGGCGGCCGCCGCCTGCGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12563:405..904+

>mRNA_L-elsbetiae_contig12563.2074.1 ID=mRNA_L-elsbetiae_contig12563.2074.1|Name=mRNA_L-elsbetiae_contig12563.2074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig12563:405..904+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGGACACACACACACACACCCTCCTCCTGCAGCGCCGGAAGGAC
AAAGGTTTCGAGACAGGTAAGGCAAAGCGCCAGACAATATATATATATCA
CTCGCTGCCGCTATTTAGCTTCCTTCGCGATATCACTCGCGCCGCTATTT
TCCTTCGCGAGTCGCCTTTGCTTCGGCGGCGGCTTTTGCTTTCGCCTGCG
CCGCCTCTCGCGCCGCCTTCAGGGTCATCGTCGGCCGCCGCGGCGCGCCC
GTACCGGCCGCCGGGGCACCGCTCCCCCCGGCGCCGGTAGCTCCCGACAC
GTACGAGGAGCGCACGTTGCCGGCGCTGGCGGCACTCGCGGCGGCCGCCG
CCTGCGCGGCATGGGAAGGACACACACACACACACCCTCCTCCTGCAGCG
CCGGAAGGACAAAGGTTTCGAGACAGGTAAGGCAAAGCGCCAGACAATAT
ATATATATCACTCGCTGCCGCTATTTAGCTTCCTTCGCGATATCACTCGC
GCCGCTATTTTCCTTCGCGAGTCGCCTTTGCTTCGGCGGCGGCTTTTGCT
TTCGCCTGCGCCGCCTCTCGCGCCGCCTTCAGGGTCATCGTCGGCCGCCG
CGGCGCGCCCGTACCGGCCGCCGGGGCACCGCTCCCCCCGGCGCCGGTAG
CTCCCGACACGTACGAGGAGCGCACGTTGCCGGCGCTGGCGGCACTCGCG
GCGGCCGCCGCCTGCGCGGC
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