mRNA_L-elsbetiae_contig12562.2073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12562.2073.1
Unique NamemRNA_L-elsbetiae_contig12562.2073.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12562.2073.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 6.020e-64
Identity = 112/149 (75.17%), Postives = 128/149 (85.91%), Query Frame = 1 
Query:   46 MESSFFEVAEPLDHDTFLSVCDDVLRDSLLLFAPFGLPRHLHQALGSEKEFLRQYGPRFRFVLEAVSDATYRERGVSESEVAVTLHKYTEEEQSEEAIAYLARMSDSLRTLYTPPRVLELPPRTPSMTSELVTIGLSLLRAGAVYAPDP 492
            M S FFEV EPLDH TFLSVCD+VLRDSLL+ APFGLPRHL +ALGSEKEF+R YGPRFRF+LEAVSD TY+ERGV+ES+VAVTLHK TEEEQ+ EA+AYLARM DSLR +Y+P R+LELP R P+ T++L TIG SLL AGAVY P P
Sbjct:    1 MCSVFFEVVEPLDHATFLSVCDEVLRDSLLVLAPFGLPRHLREALGSEKEFIRLYGPRFRFILEAVSDVTYKERGVTESQVAVTLHKLTEEEQNPEAMAYLARMGDSLREIYSPARILELPTRAPTSTADLATIGSSLLGAGAVYTPGP 149
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BLAST of mRNA_L-elsbetiae_contig12562.2073.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.910e-27
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:   43 EMESSFFEVAEPLDHDTFLSVCDDVLRDSLLLFAPFGLPRHLHQALGSEKEFLRQYGPRFRFVLEAVSDATYRERGVSESEVAVTLHKYTEEEQSEEAIAYLARMSDSLRTLYTPPRVLELP 408
            + E  FF+V  PLD  TFLS   +VL  SL+LFAP GLP  L +   SE  FL  YGPRFR +LEAVS+A Y  RG+SESE++VT+HK   EE+  +A+A +  + ++L+  Y  P VLELP
Sbjct:   34 DSEGDFFQVVAPLDLSTFLSATREVLETSLMLFAPLGLPPLLKRICPSEAGFLETYGPRFRAILEAVSEAVYEARGISESEMSVTIHKLVTEERDAQAVAAMRDLGEALKFAYDAPDVLELP 155
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BLAST of mRNA_L-elsbetiae_contig12562.2073.1 vs. uniprot
Match: A0A0P1A674_PLAHL (Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A674_PLAHL)

HSP 1 Score: 74.3 bits (181), Expect = 2.710e-12
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 1 
Query:   58 FFEVAEPLDHDTFLSVCDDVLRDSLLLFAPFGLPRHLHQALGSEKEFLRQYGPRFRFVLEAVSDATYRERGVSESEVAVTLHKYTEEEQSEEAIAYLARMSDSLRTLYTPPRVLELPPRTPSMTSELVT 444
            +F++  P+    FL V   + R    + APFG P  LH+   S +E   Q G  F+ VLE  SD  Y+E+G++E  +A+++HK+ EE    +  + +  +++    LYTPP VLE+P  T      L T
Sbjct:  338 YFDMPSPISKVEFLDVSRTIFRVVSFVLAPFGFPDSLHEKR-SLQEVKTQCGSLFQDVLEVCSDLIYQEKGLNEGAMAMSVHKWVEENHDRDCTSCIKAINELWDVLYTPPSVLEVPDLTEDQIVALAT 465
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12562.2073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRZ0_ECTSI6.020e-6475.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV6_9STRA4.910e-2750.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P1A674_PLAHL2.710e-1234.11Translocase of outer mitochondrial membrane comple... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12562contigL-elsbetiae_contig12562:1135..2921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1.3e-56
Seed eggNOG ortholog2880.D8LRZ0
Preferred nameTOMM70A
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
EggNOG free text desc.protein transmembrane transport
EggNOG OGsKOG0547@1,KOG0547@2759
EC2.4.1.145
COG Functional cat.S
CAZyGT54
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Ec32 ortholog descriptionMitochondrial import receptor, Tom70 homolog
Ec32 orthologEc-08_001370.1
Exons3
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12562.2073.1prot_L-elsbetiae_contig12562.2073.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12562 1135..2920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.5211346-CDS-L-elsbetiae_contig12562:1134..12951622815448.5211346-CDS-L-elsbetiae_contig12562:1134..1295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 1135..1295 +
1691682903.17336-CDS-L-elsbetiae_contig12562:1134..12951691682903.17336-CDS-L-elsbetiae_contig12562:1134..1295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 1135..1295 +
1622815448.531119-CDS-L-elsbetiae_contig12562:1695..18391622815448.531119-CDS-L-elsbetiae_contig12562:1695..1839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 1696..1839 +
1691682903.185441-CDS-L-elsbetiae_contig12562:1695..18391691682903.185441-CDS-L-elsbetiae_contig12562:1695..1839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 1696..1839 +
1622815448.5408936-CDS-L-elsbetiae_contig12562:2703..29201622815448.5408936-CDS-L-elsbetiae_contig12562:2703..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 2704..2920 +
1691682903.194372-CDS-L-elsbetiae_contig12562:2703..29201691682903.194372-CDS-L-elsbetiae_contig12562:2703..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12562 2704..2920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12562.2073.1

>prot_L-elsbetiae_contig12562.2073.1 ID=prot_L-elsbetiae_contig12562.2073.1|Name=mRNA_L-elsbetiae_contig12562.2073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
AAGAGATPSTVSGDEMESSFFEVAEPLDHDTFLSVCDDVLRDSLLLFAPF
GLPRHLHQALGSEKEFLRQYGPRFRFVLEAVSDATYRERGVSESEVAVTL
HKYTEEEQSEEAIAYLARMSDSLRTLYTPPRVLELPPRTPSMTSELVTIG
LSLLRAGAVYAPDPPVFHPGGETG
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mRNA from alignment at L-elsbetiae_contig12562:1135..2921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12562.2073.1 ID=mRNA_L-elsbetiae_contig12562.2073.1|Name=mRNA_L-elsbetiae_contig12562.2073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1787bp|location=Sequence derived from alignment at L-elsbetiae_contig12562:1135..2921+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTGGTGCTGGTGCAACACCAAGCACAGTGAGTGGAGACGAGATGGA
AAGCTCCTTCTTTGAGGTGGCAGAGCCTCTCGATCATGACACGTTCCTGA
GCGTGTGCGATGATGTCCTTCGGGATAGCCTTCTCCTGTTCGCCCCCTTT
GGCCTGCCCAGGTGGGTCGTTCGTAAGGTGGTGCCTGTGGCTTGTGTGCG
TGTGCATGAACGACTGCTGGGCCTCCCTGCTTTGTCAACGGGTTTGTCTG
GCCATATCCTCTGTCTGGTTGCTTTGGTATTGCGTGCACACCACAGCAAA
ATTTGAACTTGCTTACAATATGATCCGCTTCGTCTGTGTACTTGCCCACA
GGCCTCTTCGTGCTGCAGGGAGGGAGGAGTTTGAAAGTTCAAAACTCAGC
ATGCCTACACACAACACAACAGCAGGCCCTCTGAAACGACTTTTTCGCAG
ATTGGATGCAGACGGCTGACGTTCGTATACATCAATTAAGACTCGGCAAG
GGCCGCCTCACCCTTTTCGTCCTCGCCGGCACACTGCTGTGTCTGTCACC
CCCACCACCAGGCACCTCCACCAGGCCCTGGGCAGCGAAAAGGAGTTCCT
TCGGCAATACGGACCAAGGTTCAGATTCGTGCTGGAAGCGGTCTCAGATG
CCACGTACCGGGAGCGCGGCGTTTCCGAGAGCGAAGTCGCCGTAACTCTC
CACAAGTGAGCCTGGTCGCGCAGAGAGCCCCAGGGGGTGTGGGCATGGGG
GGCGCACCGATGTCGGGAAAGTTGTATTTGTAGATAATCTCTGGCATCTG
CATCATGTACATCATGGCAAGCGCGTGAGCTCAGGGTGGGTGGCGCCTAA
CGGCCGAGCTACTCGGTATTTTGGCCCTTGGGGGCACGGGGTCCCGTGAC
GATGGTCGCCCGTTCTAGGCTCTCTTACTCTTGCTTGTCACAAAGCCAAG
GAGACGTCGCTGGCAACATGAACGGCGGCAGTTTTCAGAGTAGAACAGCA
GTACATAGTACATGGCCTCTCCCTCACACCTGCCCGCACCGCTCGCTCGC
TGCGACTCAGTGCTTTGACAAGCCGCAGCTGTGACAAGCCGCAATACGCT
TCGTAGTTGCAACATTGCACCCCTAGTCTAGACTTTAAGGCAGTCCTCCC
GTCATGTGGAATAAGCTCGAGTTCTGGTCTTCTCCTGTTACCGGCTCGCA
AGCTTCTAGACTACATGGCGGAAGCCCCCGAGGATACAAAGTAGTGGTGG
TTCCCGAGCGTTGGTTCAACGCGAGCAGCTGCGCCCGCTTTTATGCATGC
CACGCATCAAAAACATAGTTTATAACATGCTGGCGTTTGAAAACACACAA
GTGTGCGTTCATGTGTACGTGACAACAACAGTCGGATGGACATCCCCATC
CTTACCTCTGTTTGAGTCTTCATGAGTATGTACATGCCAGTATCTCAGTG
AAAATTTTCGGCCCAGGAGCCAAGACAAATCTATGTACTGTTGTTGCCGT
TACTTTGCACCGCGGTGTTTTTAATTAGTCCGCTGCACGGTTCTGTCACC
GGCTCCCTTTTCCGCGCAGGTACACCGAAGAAGAGCAGAGCGAGGAAGCG
ATCGCGTACCTGGCGAGGATGTCGGACTCTCTCCGGACCCTCTACACCCC
CCCTCGCGTCCTCGAGCTCCCCCCGCGGACCCCCTCGATGACCAGCGAAT
TGGTGACCATCGGCCTGAGCCTCCTCAGAGCAGGTGCCGTCTACGCCCCG
GACCCGCCGGTTTTCCACCCGGGAGGAGAGACGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12562:1135..2921+

>mRNA_L-elsbetiae_contig12562.2073.1 ID=mRNA_L-elsbetiae_contig12562.2073.1|Name=mRNA_L-elsbetiae_contig12562.2073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig12562:1135..2921+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTGGTGCTGGTGCAACACCAAGCACAGTGAGTGGAGACGAGATGGA
AAGCTCCTTCTTTGAGGTGGCAGAGCCTCTCGATCATGACACGTTCCTGA
GCGTGTGCGATGATGTCCTTCGGGATAGCCTTCTCCTGTTCGCCCCCTTT
GGCCTGCCCAGGCGGCTGGTGCTGGTGCAACACCAAGCACAGTGAGTGGA
GACGAGATGGAAAGCTCCTTCTTTGAGGTGGCAGAGCCTCTCGATCATGA
CACGTTCCTGAGCGTGTGCGATGATGTCCTTCGGGATAGCCTTCTCCTGT
TCGCCCCCTTTGGCCTGCCCAGGCACCTCCACCAGGCCCTGGGCAGCGAA
AAGGAGTTCCTTCGGCAATACGGACCAAGGTTCAGATTCGTGCTGGAAGC
GGTCTCAGATGCCACGTACCGGGAGCGCGGCGTTTCCGAGAGCGAAGTCG
CCGTAACTCTCCACAAGCACCTCCACCAGGCCCTGGGCAGCGAAAAGGAG
TTCCTTCGGCAATACGGACCAAGGTTCAGATTCGTGCTGGAAGCGGTCTC
AGATGCCACGTACCGGGAGCGCGGCGTTTCCGAGAGCGAAGTCGCCGTAA
CTCTCCACAAGTACACCGAAGAAGAGCAGAGCGAGGAAGCGATCGCGTAC
CTGGCGAGGATGTCGGACTCTCTCCGGACCCTCTACACCCCCCCTCGCGT
CCTCGAGCTCCCCCCGCGGACCCCCTCGATGACCAGCGAATTGGTGACCA
TCGGCCTGAGCCTCCTCAGAGCAGGTGCCGTCTACGCCCCGGACCCGCCG
GTTTTCCACCCGGGAGGAGAGACGGGGGTACACCGAAGAAGAGCAGAGCG
AGGAAGCGATCGCGTACCTGGCGAGGATGTCGGACTCTCTCCGGACCCTC
TACACCCCCCCTCGCGTCCTCGAGCTCCCCCCGCGGACCCCCTCGATGAC
CAGCGAATTGGTGACCATCGGCCTGAGCCTCCTCAGAGCAGGTGCCGTCT
ACGCCCCGGACCCGCCGGTTTTCCACCCGGGAGGAGAGACGGGG
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