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Homology
BLAST of mRNA_L-elsbetiae_contig12561.2072.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.520e-55 Identity = 145/291 (49.83%), Postives = 168/291 (57.73%), Query Frame = 1
Query: 280 GLPAERTSYVFCPEAHGMMSGGMIERASKATYDHHHPGARPCPAXXXXXXXXXXXXXXXXXXDAALGGTGQSKINVIDPREQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAHALVPSHANSNNAKLSKLAVDGGG-VYFGSAGDGRREALGEGGDASNRPRRRGPAPIH--GAVNGGPQGGFHS------RSPSADAEFLTMLVPSSALDWGPSTLAVRAALNGTTEDSPSXXXXXXXXXXXXXXXXXXXXXXXXEAMTSWVEIDCQILNARLVQ 1125
GLP+ERTSYVFCPEA+GMMSGGMIERASKATYD+HHPGARPCPA GG G+ K+NVID R+++ AE ALV +S++A + VDGGG +YFGSAGD A GEGG+ SNRPRRRGPAP+H G PQ GFH +SPS+D+EFLTMLVPSS+LDWGPSTLAVRA+LNGT++ XXXXXXXX SWVEIDCQIL+ARLVQ
Sbjct: 1058 GLPSERTSYVFCPEAYGMMSGGMIERASKATYDYHHPGARPCPAGRGGDGGVPEDGDSEFH-----GGAGEVKVNVIDARQERLRLLAADSPQVQPHAEDPHAAVDA-----------------AEYLALV----SSSDANMD---VDGGGEIYFGSAGDEGGAAFGEGGNDSNRPRRRGPAPMHHRGPSGATPQRGFHGGSGDYLQSPSSDSEFLTMLVPSSSLDWGPSTLAVRASLNGTSDSD-----------------GXXXXXXXXXXXXSWVEIDCQILSARLVQ 1302
BLAST of mRNA_L-elsbetiae_contig12561.2072.1 vs. uniprot
Match: D7FWU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU4_ECTSI) HSP 1 Score: 181 bits (458), Expect = 2.160e-51 Identity = 130/282 (46.10%), Postives = 154/282 (54.61%), Query Frame = 1
Query: 331 MMSGGMIERASKATYDHHHPGARPCPAXXXXXXXXXXXXXXXXXXDAALGGTGQSKINVIDPREQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAHALVPSHANSNNAKLSKLAVDGGG-VYFGSAGDGRREALGEGGDASNRPRRRGPAPIH-----GAVNGGPQGGFHS------RSPSADAEFLTMLVPSSALDWGPSTLAVRAALNGTTEDSPSXXXXXXXXXXXXXXXXXXXXXXXXEAMTSWVEIDCQILNARLVQDVSFT 1140
MMSGGMIERASKATYD+HHPGARPCPA GG G+ K+NVIDPR+++ AEA ALV +S++A + +DGGG +YFGS D A G GGD SNRPRRRGPAP+H GA + PQ GFH+ +SPS+D+EFLTMLVPSSALDWGPSTLAVRA+LNGT++ XXX +SWVEIDCQIL+ARLVQDVSF+
Sbjct: 1 MMSGGMIERASKATYDYHHPGARPCPAGRGGDGGVPEDGDSEFH-----GGAGEVKVNVIDPRQERLRLLAADAPQVQPHAEDPHAAVDA-----------------AEALALV----SSSDANMD---MDGGGNIYFGSGRDEGGAAFGAGGDDSNRPRRRGPAPMHHRGPSGAAS--PQRGFHAGGGDYLQSPSSDSEFLTMLVPSSALDWGPSTLAVRASLNGTSDGD---------------GGRGATAGXXXXXXSSWVEIDCQILSARLVQDVSFS 236
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1146 |
| Cds size | 1146 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815448.4212441-CDS-L-elsbetiae_contig12561:86..385 | 1622815448.4212441-CDS-L-elsbetiae_contig12561:86..385 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 87..385 - |
| 1691682903.132125-CDS-L-elsbetiae_contig12561:86..385 | 1691682903.132125-CDS-L-elsbetiae_contig12561:86..385 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 87..385 - |
| 1622815448.435762-CDS-L-elsbetiae_contig12561:1143..1498 | 1622815448.435762-CDS-L-elsbetiae_contig12561:1143..1498 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 1144..1498 - |
| 1691682903.14133-CDS-L-elsbetiae_contig12561:1143..1498 | 1691682903.14133-CDS-L-elsbetiae_contig12561:1143..1498 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 1144..1498 - |
| 1622815448.4498134-CDS-L-elsbetiae_contig12561:2505..2659 | 1622815448.4498134-CDS-L-elsbetiae_contig12561:2505..2659 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 2506..2659 - |
| 1691682903.1505337-CDS-L-elsbetiae_contig12561:2505..2659 | 1691682903.1505337-CDS-L-elsbetiae_contig12561:2505..2659 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 2506..2659 - |
| 1622815448.4613535-CDS-L-elsbetiae_contig12561:3703..4041 | 1622815448.4613535-CDS-L-elsbetiae_contig12561:3703..4041 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 3704..4041 - |
| 1691682903.1595743-CDS-L-elsbetiae_contig12561:3703..4041 | 1691682903.1595743-CDS-L-elsbetiae_contig12561:3703..4041 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12561 3704..4041 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12561.2072.1 >prot_L-elsbetiae_contig12561.2072.1 ID=prot_L-elsbetiae_contig12561.2072.1|Name=mRNA_L-elsbetiae_contig12561.2072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=382bp
ERSEERSEEEEPSGKELDLFYRGGHGGHSGHSGHSGHSGHSGHSGHSSGG
SGHSGGGSGGDRGRGGGGGGGGGGRSGDRGQPGAGMVSGTTPGGLPAERT
SYVFCPEAHGMMSGGMIERASKATYDHHHPGARPCPAAAAGGAAGVGIGG
DGDGDDAALGGTGQSKINVIDPREQQQQQQQQRQQRPQQERMRLLAAAEV
GEAPEAAAAAAAAAAAVAEAHALVPSHANSNNAKLSKLAVDGGGVYFGSA
GDGRREALGEGGDASNRPRRRGPAPIHGAVNGGPQGGFHSRSPSADAEFL
TMLVPSSALDWGPSTLAVRAALNGTTEDSPSSAAAGGGGGRGGGGGGGGG
GGGGGEAMTSWVEIDCQILNARLVQDVSFTG* back to topmRNA from alignment at L-elsbetiae_contig12561:87..4041- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12561.2072.1 ID=mRNA_L-elsbetiae_contig12561.2072.1|Name=mRNA_L-elsbetiae_contig12561.2072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3955bp|location=Sequence derived from alignment at L-elsbetiae_contig12561:87..4041- (Laminarionema elsbetiae ELsaHSoW15)
GAACGTTCCGAAGAGCGTTCCGAAGAAGAAGAACCTTCTGGGAAGGAGCT
TGACCTCTTCTACCGCGGCGGCCACGGCGGCCACAGCGGTCACAGCGGTC
ACAGCGGTCACAGCGGTCACAGCGGTCACAGCGGTCACAGCAGCGGCGGC
AGCGGCCACAGCGGCGGCGGCAGCGGCGGCGACCGCGGCCGTGGTGGCGG
CGGCGGCGGCGGCGGCGGGGGAAGGAGCGGGGACCGCGGGCAGCCAGGAG
CGGGGATGGTGTCGGGCACGACGCCCGGAGGGCTCCCGGCTGAGCGCACC
TCGTACGTGTTCTGCCCGGAAGCCCATGGCATGATGAGGTATGTACCGTA
CGTGACACAATATAATACCACACCCCCTGGATCGAGTTTTAGAGCTCGGT
TACTCCGTAACGAAGAAGGCGCCAGCTCCAAACAACACATTTTCGGACAG
CCCTTGACTAGGTCTTTCCAACGCCACCCCCTTTCGACACTGTCATTCTC
CTCGCTGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTAT
CTTGTGTCACCTACGGTATAATATATGTATGAATTGTATTTGTGTATCAT
ACCGTAGGTGACACAGGTTACCACAACCTCTCCCCTGGTCAGATTGGTTT
TCGACGCTCGATTTATTCCTCCCCAGCAAGAAGAAAAAAGAGTGCCGGCC
AGTCAGTGCCGAAAGGGGGTGGGTGGCGTTGTTGGAAATATCTATCGTAC
GTATGTAGTCGAGGGCTGTCCGAAAATATGTCGTCTGGTGCTGGCGCCTT
CTGTTCGTTACGGATTAATGTGGTGGAGCTCTAAAGTTCGGTCCAGGGGG
TGTGGTATCTTGTGTCACCAACGGCATATGCATGGGCACGACAAAGTATG
TGGAAGTATCTACGTATGTCAGGCCGTCTGTCTGAGCACGGGGGTGACGT
GACATGACGTGACGGGGGTGAGGGCTTAGCGGTCAATGGCGTCAGGGTGT
GCGTAAATACCCCGCTCGGGAATGTATTTATGTATGTATGATGTGTGGTG
TATTTCATCGGGGTGGTGAATCAATGCTGTTTTTTGGGACACAGGCTACA
TTTGCTCATTGTGTGTGCCTTTGCCTTTTTTGGGCAGGTATGCGTGCACC
CCGCCTTTTGACCTCGCCTCTGAATCACACGGGTGTGTACACATTTTCCA
AAGCCGGTTGATCTCATCTTTCATCCACAACGCGGAGAGGTAGGTATTTA
CCATACATACATATGTACTAAATAATTACCATCCCATTTTTCCCTCCACC
TCGCCCCCACTTCCTCTCCTCCAACCTCCCTTTTTGTCTCGATACATCTG
CTGCTTTTTTTTTCGCTTGCTTTTGGCATCAGTGGAGGCATGATCGAGCG
TGCCAGCAAGGCCACGTACGACCACCACCACCCGGGGGCGAGGCCGTGCC
CGGCAGCGGCCGCCGGTGGTGCCGCTGGTGTCGGCATCGGCGGCGACGGG
GACGGTGACGACGCGGCCTTGGGCGGGACCGGCCAGGTCAGGATCAGATC
TATTCGTTTATTTATTTATTTATTCGACAATTATTTTTCCAGTGCTCGAT
GGGCTTCATTCAGGGTCAGGGTAGGGTTTAGGGTTACACAGTTTTTTTTT
TTTATCTTATCTTCACATTTATTTCCCGTGCTCGATGGGCTTTAGGGTTA
TATATATATCGGGTTTAGGGCTAATTTATTTTTATTTTTTATTTTTCATT
TTTATATTTTGTTTTTTCATTCTTGACATTTATTTCCAGTGCTCGAGGAC
GTATGCCAGAGTATTTAGAGACAGGGTTAGGTTTGTTAGAAGCCCGAAAT
CAATCCAGTAGACCAGTCAGCGCGATTTCGGCTTCGGGTTAGGGTCGTTT
GAACCCCATGACTGGGTTTTATTTTAGAGGCCGAAATCAACCCAGTAGAC
CAGTCAGTGCGGACTGGTCTAGTGATCTAATTTCGGCCTTTATTCATGTT
AGTCGTGGGTCGTCTAGCTGGCTAGTCGCAGTGGAGGATGATGGGGGCCA
GCGGAGCAGACGACGAATTTTCAAGCAAAAACAGAAAATATGTGTATTGT
ATGTACCCTGCCCGTCCGCTTGTGGTGCCGGTGTCGTTCAGCTCGGCCCG
GCGAAACCACCTTCCCCTGGTGCGCGTCATTCCTCGGGGCCGTGTTTCTC
TTCCCCAGCAGTCTACGCGGGGTTTTTGTCTTGAGCTAACATATGGGATA
AAGTATGGAAACCGTTTGGGGGGGGTCGGTGGCTGGGGTTAGGGTTAGGG
TTAGGGTTAGAGATAGTAGTATAAAATTAATTTCTGCGTAGGCGGCCCTT
TCCCGGTGTGCTTGTTTTTGCTGCTGCTGCTGCTCACGCGAGCCGATAAC
GTTGATCTTGAGTACAAAACCCTTCCTCCCTCCCTCCCTTTTTTTTTCTT
TTTCTTTTTTTCGTCCTCTGCTGGTTGGTTGGTTCGCATGCACGTTTTTG
CACGTATTCATGTTTTGTTTGGTGTACACCCGCCTACATGCAGTCGAAGA
TCAACGTCATCGACCCGCGTGAGCAGCAGCAACAGCAACAGCAACAGCGA
CAACAGCGGCCGCAGCAGGAACGCATGCGCCTCCTGGCCGCCGCCGAAGT
AGGAGAGGCGCCAGAAGCCGCCGCGGCGGCGGCCGCGGCCGCGGCAGCGG
TAGCCGAGGCCCACGCTCTCGTCCCTTCCCACGCGAACAGCAACAACGCG
AAGCTCAGCAAGCTCGCCGTTGACGGCGGCGGGGTCTACTTCGGCTCCGC
CGGCGACGGTCGCCGCGAGGCGTTGGGCGAGGGAGGGGACGCTTCGAACC
GTCCCCGGAGGCGAGGACCGGCGCCCATCCACGGGGCCGTCAACGGAGGT
GAGAGGGACGTTTTGCGCCTATCGAAACATGTGTATACAAACTAAAACGA
AGTATTTTGTTTCTTCTTCCCATTTTTTCTGATCTAAAATAAATACCATA
ATAATAATAATAGAAAAGGGTTACCGGACGTATGTACATAGATATGCTGT
AGTGGTTTTCCGCCGCAAATATCCACACATACATACGTCACAATCCTCCC
GCACACACATATGCAGCATCTACTCCTCCCATGAAATATTGTCCGATACA
CAAGATGGCAACCGCACTGTCTTGCTGAGCCTGCTATTAGTAACAGGGGA
GATGCCACTATACAAATGCCCAGGATAGAAATAAAGCACTCGATTACGAC
ACCACTGCTGTGTGTACGTGTGCACCCTCACGAAAGGTATATACGACTGT
AGTAAAAGAGACACGAAAAAAAAACGGCGTATTTACATCCAAGTACAACA
TACACACCACAAACACACACGCACACACACGGAAGATCAGTGAACCAGTG
TATGTGCACGTAAGGATTGCGGATTTTGTGTCCGTAGCTTGGGGGCGGTG
ATGGAGGGTAAGACTGCCTAGTCCCAACAGCAGCCCCCCCACCCCTGGAA
CGACTTTTTCACGGATCGGGCGCGTACATAAATCGCGTACATCTACAACA
GTAAATATAACATTTTATTGAAAACGCCTCCCTCCTTCCCTCCTTCCTTC
CCTCCCTCCCTCCCCCCCTTCCCCACCGCGCCCCCTTCCCCCCCGCCGGG
CCGCAGGACCCCAAGGGGGTTTCCATTCCCGTTCCCCTTCGGCCGACGCG
GAGTTCCTCACCATGCTCGTTCCGAGCAGCGCGCTCGACTGGGGCCCGAG
CACGCTGGCGGTCAGGGCGGCGCTGAACGGCACCACGGAAGACTCGCCTT
CGTCTGCTGCGGCGGGAGGAGGTGGAGGTAGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGAAGCGATGACGTCCTGGGTGGAGAT
TGACTGCCAGATCCTGAACGCTCGCCTGGTACAGGACGTGTCTTTCACCG
GATAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12561:87..4041- >mRNA_L-elsbetiae_contig12561.2072.1 ID=mRNA_L-elsbetiae_contig12561.2072.1|Name=mRNA_L-elsbetiae_contig12561.2072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig12561:87..4041- (Laminarionema elsbetiae ELsaHSoW15)
GAACGTTCCGAAGAGCGTTCCGAAGAAGAAGAACCTTCTGGGAAGGAGCT
TGACCTCTTCTACCGCGGCGGCCACGGCGGCCACAGCGGTCACAGCGGTC
ACAGCGGTCACAGCGGTCACAGCGGTCACAGCGGTCACAGCAGCGGCGGC
AGCGGCCACAGCGGCGGCGGCAGCGGCGGCGACCGCGGCCGTGGTGGCGG
CGGCGGCGGCGGCGGCGGGGGAAGGAGCGGGGACCGCGGGCAGCCAGGAG
CGGGGATGGTGTCGGGCACGACGCCCGGAGGGCTCCCGGCTGAGCGCACC
TCGTACGTGTTCTGCCCGGAAGCCCATGGCATGATGAGGAACGTTCCGAA
GAGCGTTCCGAAGAAGAAGAACCTTCTGGGAAGGAGCTTGACCTCTTCTA
CCGCGGCGGCCACGGCGGCCACAGCGGTCACAGCGGTCACAGCGGTCACA
GCGGTCACAGCGGTCACAGCGGTCACAGCAGCGGCGGCAGCGGCCACAGC
GGCGGCGGCAGCGGCGGCGACCGCGGCCGTGGTGGCGGCGGCGGCGGCGG
CGGCGGGGGAAGGAGCGGGGACCGCGGGCAGCCAGGAGCGGGGATGGTGT
CGGGCACGACGCCCGGAGGGCTCCCGGCTGAGCGCACCTCGTACGTGTTC
TGCCCGGAAGCCCATGGCATGATGAGTGGAGGCATGATCGAGCGTGCCAG
CAAGGCCACGTACGACCACCACCACCCGGGGGCGAGGCCGTGCCCGGCAG
CGGCCGCCGGTGGTGCCGCTGGTGTCGGCATCGGCGGCGACGGGGACGGT
GACGACGCGGCCTTGGGCGGGACCGGCCAGTGGAGGCATGATCGAGCGTG
CCAGCAAGGCCACGTACGACCACCACCACCCGGGGGCGAGGCCGTGCCCG
GCAGCGGCCGCCGGTGGTGCCGCTGGTGTCGGCATCGGCGGCGACGGGGA
CGGTGACGACGCGGCCTTGGGCGGGACCGGCCAGTCGAAGATCAACGTCA
TCGACCCGCGTGAGCAGCAGCAACAGCAACAGCAACAGCGACAACAGCGG
CCGCAGCAGGAACGCATGCGCCTCCTGGCCGCCGCCGAAGTAGGAGAGGC
GCCAGAAGCCGCCGCGGCGGCGGCCGCGGCCGCGGCAGCGGTAGCCGAGG
CCCACGCTCTCGTCCCTTCCCACGCGAACAGCAACAACGCGAAGCTCAGC
AAGCTCGCCGTTGACGGCGGCGGGGTCTACTTCGGCTCCGCCGGCGACGG
TCGCCGCGAGGCGTTGGGCGAGGGAGGGGACGCTTCGAACCGTCCCCGGA
GGCGAGGACCGGCGCCCATCCACGGGGCCGTCAACGGAGTCGAAGATCAA
CGTCATCGACCCGCGTGAGCAGCAGCAACAGCAACAGCAACAGCGACAAC
AGCGGCCGCAGCAGGAACGCATGCGCCTCCTGGCCGCCGCCGAAGTAGGA
GAGGCGCCAGAAGCCGCCGCGGCGGCGGCCGCGGCCGCGGCAGCGGTAGC
CGAGGCCCACGCTCTCGTCCCTTCCCACGCGAACAGCAACAACGCGAAGC
TCAGCAAGCTCGCCGTTGACGGCGGCGGGGTCTACTTCGGCTCCGCCGGC
GACGGTCGCCGCGAGGCGTTGGGCGAGGGAGGGGACGCTTCGAACCGTCC
CCGGAGGCGAGGACCGGCGCCCATCCACGGGGCCGTCAACGGAGGACCCC
AAGGGGGTTTCCATTCCCGTTCCCCTTCGGCCGACGCGGAGTTCCTCACC
ATGCTCGTTCCGAGCAGCGCGCTCGACTGGGGCCCGAGCACGCTGGCGGT
CAGGGCGGCGCTGAACGGCACCACGGAAGACTCGCCTTCGTCTGCTGCGG
CGGGAGGAGGTGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGAAGCGATGACGTCCTGGGTGGAGATTGACTGCCAGAT
CCTGAACGCTCGCCTGGTACAGGACGTGTCTTTCACCGGATAGGACCCCA
AGGGGGTTTCCATTCCCGTTCCCCTTCGGCCGACGCGGAGTTCCTCACCA
TGCTCGTTCCGAGCAGCGCGCTCGACTGGGGCCCGAGCACGCTGGCGGTC
AGGGCGGCGCTGAACGGCACCACGGAAGACTCGCCTTCGTCTGCTGCGGC
GGGAGGAGGTGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGGGAAGCGATGACGTCCTGGGTGGAGATTGACTGCCAGATC
CTGAACGCTCGCCTGGTACAGGACGTGTCTTTCACCGGATAG back to top
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