mRNA_L-elsbetiae_contig1256.2071.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1256.2071.1
Unique NamemRNA_L-elsbetiae_contig1256.2071.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1256.2071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1256contigL-elsbetiae_contig1256:26388..26940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.247447-CDS-L-elsbetiae_contig1256:26387..264711622815448.247447-CDS-L-elsbetiae_contig1256:26387..26471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 26388..26471 +
1691682903.0852234-CDS-L-elsbetiae_contig1256:26387..264711691682903.0852234-CDS-L-elsbetiae_contig1256:26387..26471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 26388..26471 +
1622815448.2925992-CDS-L-elsbetiae_contig1256:26856..269401622815448.2925992-CDS-L-elsbetiae_contig1256:26856..26940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 26857..26940 +
1691682903.0942562-CDS-L-elsbetiae_contig1256:26856..269401691682903.0942562-CDS-L-elsbetiae_contig1256:26856..26940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 26857..26940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1256.2071.1prot_L-elsbetiae_contig1256.2071.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1256 26388..26940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1256.2071.1

>prot_L-elsbetiae_contig1256.2071.1 ID=prot_L-elsbetiae_contig1256.2071.1|Name=mRNA_L-elsbetiae_contig1256.2071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
APTKRRRCAARSKAWLAAASTPCSWNTLTATGRGALLRVCSPTSATMKTM
RTVAGP
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mRNA from alignment at L-elsbetiae_contig1256:26388..26940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1256.2071.1 ID=mRNA_L-elsbetiae_contig1256.2071.1|Name=mRNA_L-elsbetiae_contig1256.2071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=553bp|location=Sequence derived from alignment at L-elsbetiae_contig1256:26388..26940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGACGAAGCGGAGAAGGTGTGCTGCGCGTTCGAAGGCATGGCTGGC
TGCAGCGTCGACGCCTTGTTCTTGGAATACACTCGTGAGTTGACAAGGAA
GCTCGATTCGATGTAAGGGGGTCTGGTTTGTGCTGGCTGCTATTTATTGT
AGGCTTACATTTTTCCATTTCGTTTCGTTTCTTTCGATCGAGAATAAAGG
CCTTGTTGTATGTGGCTGTTTCACCGAAATCCCAACGAGGATGCCGGTCG
TTCTGTTAATCACACGGTTTCTACATACGACTAACCCACACATCCCGTTC
TCGCAGTTGCGAAAAACACGGCCAGTTTTATCCAATCGCGCACATTTCTG
TCTGATGAGCTCTTCTCTTTCCTAACCACCATGTGACTACTGTGCTACCA
ATCTTGTTGTGTTGCTAACATGTCGATTTTGGTCGATCGATCGAATTTTG
TGTGTGACTGTACCGTAAGACTGCAACAGGGAGGGGAGCGCTACTGCGTG
TGTGTTCACCGACTTCTGCAACTATGAAGACTATGAGGACAGTAGCGGGG
CCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1256:26388..26940+

>mRNA_L-elsbetiae_contig1256.2071.1 ID=mRNA_L-elsbetiae_contig1256.2071.1|Name=mRNA_L-elsbetiae_contig1256.2071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig1256:26388..26940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGACGAAGCGGAGAAGGTGTGCTGCGCGTTCGAAGGCATGGCTGGC
TGCAGCGTCGACGCCTTGTTCTTGGAATACACTCGCGCCGACGAAGCGGA
GAAGGTGTGCTGCGCGTTCGAAGGCATGGCTGGCTGCAGCGTCGACGCCT
TGTTCTTGGAATACACTCACTGCAACAGGGAGGGGAGCGCTACTGCGTGT
GTGTTCACCGACTTCTGCAACTATGAAGACTATGAGGACAGTAGCGGGGC
CAACTGCAACAGGGAGGGGAGCGCTACTGCGTGTGTGTTCACCGACTTCT
GCAACTATGAAGACTATGAGGACAGTAGCGGGGCCA
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