mRNA_L-elsbetiae_contig1256.2069.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1256.2069.1
Unique NamemRNA_L-elsbetiae_contig1256.2069.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1256.2069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1256contigL-elsbetiae_contig1256:10718..11182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size465
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1256.2069.1prot_L-elsbetiae_contig1256.2069.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1256 10817..11143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.3640163-UTR-L-elsbetiae_contig1256:10717..108161622815448.3640163-UTR-L-elsbetiae_contig1256:10717..10816Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1256 10718..10816 +
1691682903.1037958-UTR-L-elsbetiae_contig1256:10717..108161691682903.1037958-UTR-L-elsbetiae_contig1256:10717..10816Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1256 10718..10816 +
1622815448.3878314-UTR-L-elsbetiae_contig1256:11143..111821622815448.3878314-UTR-L-elsbetiae_contig1256:11143..11182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1256 11144..11182 +
1691682903.1232595-UTR-L-elsbetiae_contig1256:11143..111821691682903.1232595-UTR-L-elsbetiae_contig1256:11143..11182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1256 11144..11182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.375829-CDS-L-elsbetiae_contig1256:10816..111431622815448.375829-CDS-L-elsbetiae_contig1256:10816..11143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 10817..11143 +
1691682903.1134276-CDS-L-elsbetiae_contig1256:10816..111431691682903.1134276-CDS-L-elsbetiae_contig1256:10816..11143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1256 10817..11143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1256.2069.1

>prot_L-elsbetiae_contig1256.2069.1 ID=prot_L-elsbetiae_contig1256.2069.1|Name=mRNA_L-elsbetiae_contig1256.2069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MRISLTYQQRILHFIRRLFPVKHSLSSLEAKEGLHLGLFTSRGTSRVEIP
HFCLTFVPGKLKAISLVNNTSTLLLTVNPARDKNITGRHRRKGSTPPPSC
AIPVGSSS*
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mRNA from alignment at L-elsbetiae_contig1256:10718..11182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1256.2069.1 ID=mRNA_L-elsbetiae_contig1256.2069.1|Name=mRNA_L-elsbetiae_contig1256.2069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=465bp|location=Sequence derived from alignment at L-elsbetiae_contig1256:10718..11182+ (Laminarionema elsbetiae ELsaHSoW15)
AATCATAAAAGCCGCCGCACCGAAGAAGGCGATCGTAGAGACTCCAACCA
AAGAGCCCACGGCGCCGTCAAAATCGCTGTCATCTGAAGAAGAGTCGAGA
TGAGGATCAGCCTCACATATCAGCAACGCATATTGCACTTTATCCGAAGA
CTTTTTCCCGTCAAACACAGTTTGTCCTCGCTCGAGGCAAAGGAAGGGTT
GCACTTGGGTCTTTTCACATCTAGGGGAACGTCGAGAGTTGAGATCCCGC
ATTTTTGTCTCACATTCGTTCCTGGAAAATTGAAAGCGATTTCGTTAGTA
AATAATACTTCGACTTTATTGTTGACTGTGAACCCTGCTCGCGATAAAAA
TATAACAGGCAGGCACCGCAGGAAGGGGTCCACCCCCCCCCCCTCTTGTG
CGATCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGTATGGGGGCCAGT
GTGGCAGACGACAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1256:10718..11182+

>mRNA_L-elsbetiae_contig1256.2069.1 ID=mRNA_L-elsbetiae_contig1256.2069.1|Name=mRNA_L-elsbetiae_contig1256.2069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1256:10718..11182+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGATCAGCCTCACATATCAGCAACGCATATTGCACTTTATCCGAAG
ACTTTTTCCCGTCAAACACAGTTTGTCCTCGCTCGAGGCAAAGGAAGGGT
TGCACTTGGGTCTTTTCACATCTAGGGGAACGTCGAGAGTTGAGATCCCG
CATTTTTGTCTCACATTCGTTCCTGGAAAATTGAAAGCGATTTCGTTAGT
AAATAATACTTCGACTTTATTGTTGACTGTGAACCCTGCTCGCGATAAAA
ATATAACAGGCAGGCACCGCAGGAAGGGGTCCACCCCCCCCCCCTCTTGT
GCGATCCCGGTTGGGTCGTCTAGCTAGATGAGGATCAGCCTCACATATCA
GCAACGCATATTGCACTTTATCCGAAGACTTTTTCCCGTCAAACACAGTT
TGTCCTCGCTCGAGGCAAAGGAAGGGTTGCACTTGGGTCTTTTCACATCT
AGGGGAACGTCGAGAGTTGAGATCCCGCATTTTTGTCTCACATTCGTTCC
TGGAAAATTGAAAGCGATTTCGTTAGTAAATAATACTTCGACTTTATTGT
TGACTGTGAACCCTGCTCGCGATAAAAATATAACAGGCAGGCACCGCAGG
AAGGGGTCCACCCCCCCCCCCTCTTGTGCGATCCCGGTTGGGTCGTCTAG
CTAG
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