mRNA_L-elsbetiae_contig12555.2068.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12555.2068.1
Unique NamemRNA_L-elsbetiae_contig12555.2068.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12555.2068.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.190e-8
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  136 WMGNNLAP----VAATAAQRAHR---RPGTPERELRQEIMDRLFDELWGRIAPQLLQLVRPAAAAA 312
            W+ NN A     + A+    +HR   R  TP+RELRQEIMDRLFDELW RI P LL ++R   AAA
Sbjct:  287 WVSNNAASEPPALGASTTGGSHRVVARLDTPQRELRQEIMDRLFDELWERITPDLLLVLRQQQAAA 352
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12555.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI6.190e-853.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12555contigL-elsbetiae_contig12555:2569..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.151979-CDS-L-elsbetiae_contig12555:2568..28831622815448.151979-CDS-L-elsbetiae_contig12555:2568..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12555 2569..2883 +
1691682903.048164-CDS-L-elsbetiae_contig12555:2568..28831691682903.048164-CDS-L-elsbetiae_contig12555:2568..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12555 2569..2883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12555.2068.1prot_L-elsbetiae_contig12555.2068.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12555 2569..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12555.2068.1

>prot_L-elsbetiae_contig12555.2068.1 ID=prot_L-elsbetiae_contig12555.2068.1|Name=mRNA_L-elsbetiae_contig12555.2068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
TADVDFDGGRASVGDGGPGPRAGAGTPVGSAAAAADTVTPAEHSGWMGNN
LAPVAATAAQRAHRRPGTPERELRQEIMDRLFDELWGRIAPQLLQLVRPA
AAAAP
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mRNA from alignment at L-elsbetiae_contig12555:2569..2883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12555.2068.1 ID=mRNA_L-elsbetiae_contig12555.2068.1|Name=mRNA_L-elsbetiae_contig12555.2068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=315bp|location=Sequence derived from alignment at L-elsbetiae_contig12555:2569..2883+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCGACGTAGACTTCGACGGAGGAAGAGCGAGTGTCGGGGACGGGGG
GCCGGGGCCGAGGGCGGGGGCGGGGACCCCTGTTGGCTCCGCCGCGGCTG
CCGCAGACACCGTTACTCCTGCGGAGCACAGCGGGTGGATGGGCAATAAT
CTAGCCCCGGTGGCGGCGACAGCCGCGCAGAGGGCGCATCGGCGGCCGGG
CACCCCGGAGCGCGAGCTCAGGCAGGAGATCATGGACCGGCTGTTCGACG
AGCTGTGGGGACGGATCGCGCCGCAGCTGTTGCAGCTGGTGCGGCCCGCG
GCGGCAGCAGCGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12555:2569..2883+

>mRNA_L-elsbetiae_contig12555.2068.1 ID=mRNA_L-elsbetiae_contig12555.2068.1|Name=mRNA_L-elsbetiae_contig12555.2068.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig12555:2569..2883+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCGACGTAGACTTCGACGGAGGAAGAGCGAGTGTCGGGGACGGGGG
GCCGGGGCCGAGGGCGGGGGCGGGGACCCCTGTTGGCTCCGCCGCGGCTG
CCGCAGACACCGTTACTCCTGCGGAGCACAGCGGGTGGATGGGCAATAAT
CTAGCCCCGGTGGCGGCGACAGCCGCGCAGAGGGCGCATCGGCGGCCGGG
CACCCCGGAGCGCGAGCTCAGGCAGGAGATCATGGACCGGCTGTTCGACG
AGCTGTGGGGACGGATCGCGCCGCAGCTGTTGCAGCTGGTGCGGCCCGCG
GCGGCAGCAGCGCCCACCGCCGACGTAGACTTCGACGGAGGAAGAGCGAG
TGTCGGGGACGGGGGGCCGGGGCCGAGGGCGGGGGCGGGGACCCCTGTTG
GCTCCGCCGCGGCTGCCGCAGACACCGTTACTCCTGCGGAGCACAGCGGG
TGGATGGGCAATAATCTAGCCCCGGTGGCGGCGACAGCCGCGCAGAGGGC
GCATCGGCGGCCGGGCACCCCGGAGCGCGAGCTCAGGCAGGAGATCATGG
ACCGGCTGTTCGACGAGCTGTGGGGACGGATCGCGCCGCAGCTGTTGCAG
CTGGTGCGGCCCGCGGCGGCAGCAGCGCCC
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