mRNA_L-elsbetiae_contig12555.2067.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12555.2067.1
Unique NamemRNA_L-elsbetiae_contig12555.2067.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12555.2067.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.770e-10
Identity = 42/81 (51.85%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   82 PLRYVPGDPFAVEEADVGAWAKHFTYLSVGGPAGXXXXXXXXXXSQEFVGGSGMLSDKRVAEGPVHRAGGGAPPNVVDMDE 324
            PLRYVPGDPFA EEADVGAWAKHFTYLSV  P            S +  GG G+L    VAE P  R       +V++ DE
Sbjct:  111 PLRYVPGDPFANEEADVGAWAKHFTYLSVV-PTERGEGGDAEKRSNDNAGG-GLLERGPVAEPPPVR-------DVMETDE 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12555.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI1.770e-1051.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12555contigL-elsbetiae_contig12555:1966..2289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.1224706-CDS-L-elsbetiae_contig12555:1965..22891622815448.1224706-CDS-L-elsbetiae_contig12555:1965..2289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12555 1966..2289 +
1691682903.037624-CDS-L-elsbetiae_contig12555:1965..22891691682903.037624-CDS-L-elsbetiae_contig12555:1965..2289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12555 1966..2289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12555.2067.1prot_L-elsbetiae_contig12555.2067.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12555 1966..2289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12555.2067.1

>prot_L-elsbetiae_contig12555.2067.1 ID=prot_L-elsbetiae_contig12555.2067.1|Name=mRNA_L-elsbetiae_contig12555.2067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
GCSLGGDSSDRDRGREGEGARKRQQVAPLRYVPGDPFAVEEADVGAWAKH
FTYLSVGGPAGGGGGGGESAASQEFVGGSGMLSDKRVAEGPVHRAGGGAP
PNVVDMDE
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mRNA from alignment at L-elsbetiae_contig12555:1966..2289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12555.2067.1 ID=mRNA_L-elsbetiae_contig12555.2067.1|Name=mRNA_L-elsbetiae_contig12555.2067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig12555:1966..2289+ (Laminarionema elsbetiae ELsaHSoW15)
GGATGTTCCCTTGGTGGCGACAGCAGCGACCGCGACCGCGGGCGGGAGGG
CGAGGGGGCACGCAAACGGCAGCAGGTAGCACCACTGCGGTACGTCCCCG
GCGACCCTTTCGCCGTCGAGGAGGCTGACGTCGGCGCCTGGGCGAAACAC
TTCACCTACCTCTCTGTGGGTGGTCCTGCAGGCGGAGGAGGAGGAGGAGG
AGAAAGCGCGGCTAGTCAGGAGTTCGTAGGCGGCAGCGGCATGCTGTCGG
ACAAGCGCGTGGCCGAGGGGCCGGTTCATCGCGCAGGGGGGGGGGCGCCG
CCGAATGTAGTGGACATGGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12555:1966..2289+

>mRNA_L-elsbetiae_contig12555.2067.1 ID=mRNA_L-elsbetiae_contig12555.2067.1|Name=mRNA_L-elsbetiae_contig12555.2067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig12555:1966..2289+ (Laminarionema elsbetiae ELsaHSoW15)
GGATGTTCCCTTGGTGGCGACAGCAGCGACCGCGACCGCGGGCGGGAGGG
CGAGGGGGCACGCAAACGGCAGCAGGTAGCACCACTGCGGTACGTCCCCG
GCGACCCTTTCGCCGTCGAGGAGGCTGACGTCGGCGCCTGGGCGAAACAC
TTCACCTACCTCTCTGTGGGTGGTCCTGCAGGCGGAGGAGGAGGAGGAGG
AGAAAGCGCGGCTAGTCAGGAGTTCGTAGGCGGCAGCGGCATGCTGTCGG
ACAAGCGCGTGGCCGAGGGGCCGGTTCATCGCGCAGGGGGGGGGGCGCCG
CCGAATGTAGTGGACATGGACGAGGGATGTTCCCTTGGTGGCGACAGCAG
CGACCGCGACCGCGGGCGGGAGGGCGAGGGGGCACGCAAACGGCAGCAGG
TAGCACCACTGCGGTACGTCCCCGGCGACCCTTTCGCCGTCGAGGAGGCT
GACGTCGGCGCCTGGGCGAAACACTTCACCTACCTCTCTGTGGGTGGTCC
TGCAGGCGGAGGAGGAGGAGGAGGAGAAAGCGCGGCTAGTCAGGAGTTCG
TAGGCGGCAGCGGCATGCTGTCGGACAAGCGCGTGGCCGAGGGGCCGGTT
CATCGCGCAGGGGGGGGGGCGCCGCCGAATGTAGTGGACATGGACGAG
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