mRNA_L-elsbetiae_contig12554.2066.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12554.2066.1
Unique NamemRNA_L-elsbetiae_contig12554.2066.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12554.2066.1 vs. uniprot
Match: D8LKY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.940e-34
Identity = 72/88 (81.82%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 MKDKLFHTPEAKRARALDSMVSAAERSNLLQEGAAAAGAEHMRRLEAADAERLGMEKEEHALRMAIGKSALALLNKMAGEPPLLLSPP 264
            M    F++PEAKRAR LDSMVSAAERSNLLQE    AGAEHMRRLE ADAERL MEKEEHALRMAIGKSALALL+KMAGEPP  LSPP
Sbjct:    1 MNKSYFNSPEAKRARVLDSMVSAAERSNLLQE----AGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLSPP 84
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BLAST of mRNA_L-elsbetiae_contig12554.2066.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.670e-25
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:   16 FHTPEAKRARALDSMVSAAERSNLLQEGAAAAGAEHMRRLEAADAE-RLGMEKEEHALRMAIGKSALALLNKMAGEPPLLLSP 261
            F++PEAKRAR LDS+VSAAERS LLQE    AGAEHMRRL  ADAE RL MEKEEHALRMAIGKSALALL+KMAGEPP  LSP
Sbjct:  301 FNSPEAKRARVLDSIVSAAERSILLQE----AGAEHMRRLVLADAEQRLTMEKEEHALRMAIGKSALALLSKMAGEPPPQLSP 379
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12554.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKY9_ECTSI2.940e-3481.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE2.670e-2580.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12554contigL-elsbetiae_contig12554:212..1413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006070.1
Exons2
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815448.0784237-CDS-L-elsbetiae_contig12554:211..3641622815448.0784237-CDS-L-elsbetiae_contig12554:211..364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12554 212..364 +
1691682903.0165398-CDS-L-elsbetiae_contig12554:211..3641691682903.0165398-CDS-L-elsbetiae_contig12554:211..364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12554 212..364 +
1622815448.090212-CDS-L-elsbetiae_contig12554:1245..14131622815448.090212-CDS-L-elsbetiae_contig12554:1245..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12554 1246..1413 +
1691682903.0273883-CDS-L-elsbetiae_contig12554:1245..14131691682903.0273883-CDS-L-elsbetiae_contig12554:1245..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12554 1246..1413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12554.2066.1prot_L-elsbetiae_contig12554.2066.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12554 212..1413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12554.2066.1

>prot_L-elsbetiae_contig12554.2066.1 ID=prot_L-elsbetiae_contig12554.2066.1|Name=mRNA_L-elsbetiae_contig12554.2066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MKDKLFHTPEAKRARALDSMVSAAERSNLLQEGAAAAGAEHMRRLEAADA
ERLGMEKEEHALRMAIGKSALALLNKMAGEPPLLLSPPESLVPQPPQPHE
SAGSMV*
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mRNA from alignment at L-elsbetiae_contig12554:212..1413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12554.2066.1 ID=mRNA_L-elsbetiae_contig12554.2066.1|Name=mRNA_L-elsbetiae_contig12554.2066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1202bp|location=Sequence derived from alignment at L-elsbetiae_contig12554:212..1413+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACAAGCTGTTCCACACCCCGGAGGCAAAGCGGGCGCGGGCCTT
GGACTCGATGGTGTCGGCGGCGGAGCGCTCGAACCTGCTGCAGGAGGGGG
CCGCGGCGGCCGGCGCGGAGCACATGCGGAGGCTGGAAGCCGCAGACGCT
GAGGTAGGGGTGTGGGTATGTATGTATGTATGTATGTACATATGCGTGTA
CGTGTGGTTTTGGTTTTTAGTTTGCAGACCACCGTTCGTGCCACGCCTCC
TGGCTATGTTTTGGTTGTCCTTTTTAGCCTGTGCGGTGGCCCTGGTCGGC
ATTCGTTTTGGATTCGCCCGCCGTTCTTTGTGGTCAGCTAATCCCCACGC
CGTGGCGTCATGCTCATGTGTGTGTGTGTGTGTGTGTGTCGTGGATCGGC
GCTGCGCTCGTGCTGAAAGATTACTCCCAGGGTTGAACATTAAAACCTTG
TATAACATTCTGTATATGTGGTATGTGATTATCTCTCCCCTGTGTTACAC
ATTGGTCCGTGTAAAGCCTTGCACTGAAAAGTGCCTGCAGACCCGTTGAC
AGCGTGTTCAGCTCCCTGCTGCAAGAAGCTCGCTCGCCCATAGACAGCCG
CTACTGTGCGGCGCCACGCCTCTGCTCTGCGAAAGTGTGTTGCTGATGCG
CTTTCCCCCCGAACCTGTTCGCCATGCACGGCATATTGACTGACCTTGAC
GTGATGTTTTCGTCGTCGACGAGACCGACCGGGTTTGCTGGTGGGGGTTT
CTTGTCTGCAGAATACGTCATGCACGCACGGCGTGCTCGAAGTGACACAC
TCGATTCGATTCGATTCGATTCGATTCGATTCTGCGAGGCTGGCTATTCA
TTCCGTTGGCATGGCGTGACACGTTGGTTGTTCTTTGTTCTCAAATTTCT
TGCGGCCTCGCACCGTATCCCCACGAACACTCTCTCTCTGAGAGAGAGGG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGACAATGT
TAACCAACAAAATCACGACCGTTTGGTGGCGCAGCGCCTGGGGATGGAGA
AGGAGGAGCACGCTTTACGCATGGCGATTGGCAAGTCGGCCCTGGCGCTA
CTCAACAAGATGGCCGGAGAGCCACCGCTTCTCCTTTCTCCACCAGAATC
ACTAGTACCGCAGCCGCCGCAACCGCACGAGTCGGCGGGGTCTATGGTCT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12554:212..1413+

>mRNA_L-elsbetiae_contig12554.2066.1 ID=mRNA_L-elsbetiae_contig12554.2066.1|Name=mRNA_L-elsbetiae_contig12554.2066.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig12554:212..1413+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACAAGCTGTTCCACACCCCGGAGGCAAAGCGGGCGCGGGCCTT
GGACTCGATGGTGTCGGCGGCGGAGCGCTCGAACCTGCTGCAGGAGGGGG
CCGCGGCGGCCGGCGCGGAGCACATGCGGAGGCTGGAAGCCGCAGACGCT
GAGATGAAGGACAAGCTGTTCCACACCCCGGAGGCAAAGCGGGCGCGGGC
CTTGGACTCGATGGTGTCGGCGGCGGAGCGCTCGAACCTGCTGCAGGAGG
GGGCCGCGGCGGCCGGCGCGGAGCACATGCGGAGGCTGGAAGCCGCAGAC
GCTGAGCGCCTGGGGATGGAGAAGGAGGAGCACGCTTTACGCATGGCGAT
TGGCAAGTCGGCCCTGGCGCTACTCAACAAGATGGCCGGAGAGCCACCGC
TTCTCCTTTCTCCACCAGAATCACTAGTACCGCAGCCGCCGCAACCGCAC
GAGTCGGCGGGGTCTATGGTCTGACGCCTGGGGATGGAGAAGGAGGAGCA
CGCTTTACGCATGGCGATTGGCAAGTCGGCCCTGGCGCTACTCAACAAGA
TGGCCGGAGAGCCACCGCTTCTCCTTTCTCCACCAGAATCACTAGTACCG
CAGCCGCCGCAACCGCACGAGTCGGCGGGGTCTATGGTCTGA
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