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Homology
BLAST of mRNA_L-elsbetiae_contig1255.2064.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.060e-38 Identity = 110/213 (51.64%), Postives = 127/213 (59.62%), Query Frame = 1
Query: 16 HQTWAPTTAAEVAAAAAVRETQGVAAEAXXXXXXXXXXXXXXXXXXXXXXXVVAENGGPVAAAGGXXXEVGLPSPXXXPKDAERGN-GTXXXXXXXGSSGDVLPPARDDSPVPGVASDNTGGDAMSPRTAEESGEESGGVLKVFMARVQTTLVKESFDKFVVALTDYRGQHISIHELVDVVSECFDHREEREARLVDEFNTFLPPGHAVRWTK 651
HQ AP TAA+V AAAA RET+GVA EA V ENGGP XXX G+PS PK+A G T G D PPARDDSPVPGVAS NTGG+AM+PR E+G VL VFM R + TL E FDKFV AL+ YR Q +SI ELVDVV +CF+H EERE +LV EFN+FLPPG+AV+ T+
Sbjct: 1090 HQAMAPETAAKVEAAAAARETRGVAVEAAARAEADG---------------VDVENGGPAXXXXXXXXXAGMPS--ACPKEACGGTMSTEREGDGSGVGSDAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGS----VLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITR 1281
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 3065 |
Cds size | 657 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815447.8259172-CDS-L-elsbetiae_contig1255:19511..19862 | 1622815447.8259172-CDS-L-elsbetiae_contig1255:19511..19862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 19512..19862 + |
1691682902.892866-CDS-L-elsbetiae_contig1255:19511..19862 | 1691682902.892866-CDS-L-elsbetiae_contig1255:19511..19862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 19512..19862 + |
1622815447.8372176-CDS-L-elsbetiae_contig1255:20338..20439 | 1622815447.8372176-CDS-L-elsbetiae_contig1255:20338..20439 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 20339..20439 + |
1691682902.9041972-CDS-L-elsbetiae_contig1255:20338..20439 | 1691682902.9041972-CDS-L-elsbetiae_contig1255:20338..20439 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 20339..20439 + |
1622815447.8493075-CDS-L-elsbetiae_contig1255:21388..21515 | 1622815447.8493075-CDS-L-elsbetiae_contig1255:21388..21515 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 21389..21515 + |
1691682902.9194334-CDS-L-elsbetiae_contig1255:21388..21515 | 1691682902.9194334-CDS-L-elsbetiae_contig1255:21388..21515 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 21389..21515 + |
1622815447.858979-CDS-L-elsbetiae_contig1255:23325..23403 | 1622815447.858979-CDS-L-elsbetiae_contig1255:23325..23403 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 23326..23403 + |
1691682902.9298248-CDS-L-elsbetiae_contig1255:23325..23403 | 1691682902.9298248-CDS-L-elsbetiae_contig1255:23325..23403 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1255 23326..23403 + |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815447.9309752-UTR-L-elsbetiae_contig1255:23403..25809 | 1622815447.9309752-UTR-L-elsbetiae_contig1255:23403..25809 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1255 23404..25809 + |
1691682902.9410396-UTR-L-elsbetiae_contig1255:23403..25809 | 1691682902.9410396-UTR-L-elsbetiae_contig1255:23403..25809 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1255 23404..25809 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1255.2064.1 >prot_L-elsbetiae_contig1255.2064.1 ID=prot_L-elsbetiae_contig1255.2064.1|Name=mRNA_L-elsbetiae_contig1255.2064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
GGVDRHQTWAPTTAAEVAAAAAVRETQGVAAEAAAKAEADGVEVAAEATA KAEAHGVVAENGGPVAAAGGGGGEVGLPSPSPCPKDAERGNGTSGGGGSG GSSGDVLPPARDDSPVPGVASDNTGGDAMSPRTAEESGEESGGVLKVFMA RVQTTLVKESFDKFVVALTDYRGQHISIHELVDVVSECFDHREEREARLV DEFNTFLPPGHAVRWTKI* back to topmRNA from alignment at L-elsbetiae_contig1255:19512..25809+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1255.2064.1 ID=mRNA_L-elsbetiae_contig1255.2064.1|Name=mRNA_L-elsbetiae_contig1255.2064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6298bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:19512..25809+ (Laminarionema elsbetiae ELsaHSoW15) GGCGGCGTGGATCGGCACCAGACTTGGGCTCCCACGACGGCCGCCGAGGT
GGCGGCGGCGGCGGCGGTGCGAGAGACTCAAGGCGTGGCGGCGGAAGCGG
CGGCGAAGGCCGAGGCGGACGGGGTAGAAGTGGCGGCAGAAGCGACTGCG
AAGGCGGAAGCGCACGGGGTAGTAGCCGAAAACGGGGGGCCAGTAGCCGC
GGCAGGCGGAGGAGGAGGAGAAGTAGGCTTGCCGTCGCCGTCGCCGTGCC
CGAAAGACGCTGAACGCGGCAACGGAACAAGTGGCGGCGGCGGCAGCGGT
GGCAGCAGCGGGGACGTGTTGCCCCCTGCTCGCGATGACTCGCCTGTGCC
GGTACGCAAGAACAGGAATGAACGAACGTGTTGGATGCTAGCACGGGATA
GAAATACGTGAACCGCGCGACACCGGCTTTCGGGGTCTGAGTGTTGGCTG
TCGGCAAGATTTCCCATGGCCTGAAAATATGTTTTGACTACCTATCCATC
CGCATAACGCATCCAAGTTTCCACCAACTAATTGTTCTTATGGGTTCGCG
CAATAGAGAGCTGACTGACGTGTTCGGTATTCCAACGCGCCTGAACTGTA
ATAATTCTTGTTTGTAGCAGGCGATTGCGATTTGTGAACCAATCCCGTCG
AAACGCCCCAACCCAACCCAACCCAACACGCGTGTGCAATAGATATCAAT
CCAAATCCGCCTGATCACTTTCTCTGCTACGGTGTGTGCGTGCGTGTGTT
GTCTACAACCTTGCCTTGACCTTGGCCTTGACCTCAAACGCTTTCGTGCC
GTTCTGCCTCCTTTATTTTCTTTGCAGGGAGTGGCGAGTGACAACACTGG
GGGAGACGCAATGTCGCCGAGAACAGCAGAAGAAAGCGGCGAAGAAAGTG
GCGGCGTCTTGAAGGTGTTCATGGCGAGGTGTGTGTGTGAAAGAGTCATG
CGTCGATGTTTGGCCGAGAACAAAAACTTGTGTCACAGCAGCTGTCGCTT
AGGCGTGTAATATACCGTGGGACAAAAGTGCGCTTAGCCCTAAACGCTGC
TATTGGAATGTAAAGGCCAAATGCGATACGCTGCAGCCGTCTTCTTCGGG
TACAGGTTGCTCGAGATGTCGGTGCAGTGCGGTAGGTTGCGTTGGAGGCG
GGCCCCTTACTACCGCGGGGTGGCAAAAGAACACCGAGGCTCTTTTAATG
AAAATACTCAAAGATGAGTTGAAGCGGCACTACTACTGGGTAGCTCGCGC
CTATTGTCGGCCTTCTTGTACGGCGGTATTGCCTAGGTGAATGTGGGATG
GGTGCGTTGCAGGTTGGTGGGACGGGGCGGATGATTTGTTCTCCGTCGAA
CCCCGCACGAGGTACGCAGGTAAGTGCCTGGTAATCTGAGTTCAACGGGT
CGGGTCCTGTCACCCTTTCCTGTCATCCTATCATGCTTGTCTGGGGTTAC
ATAGACTTAGGGCCTTGGAGCCCGAGATGGCATGCGAATCGTGAGTGCGA
AAATTTTGCAGGGGTTGTCTCGTCGACCACTCATGTAGCACCGTTTAGAC
AACCTTGGCGGTGCAGCTTGCTCTGGCTCTCGTTTACGCCCACCAAGGCA
GGCAACACGGTTTGTGACGCGCTGGAGAAGACGGCGGGGATGGTCGAAAG
CGGTCCACGCGGTCGATGGCTTGATGCGGTCGGAAGCGCCTGCCCTGCCC
TGCCCTGCCCTACCCATAAATGCACCGACAAGTGACACCAGCAAAGAAAA
GCTCGCTCTGCACGGTACCACCCGACGGCATATTTGTGTCTCTTGATGTA
TGATATCTTCGTAGACACCTGTCCTGTTCGCCTGCATGAACCCCCAGCCC
ACCCCTTACCTCGCCTCTCTCCCGCAGGGTCCAGACCACGCTCGTCAAAG
AATCGTTCGACAAGTTTGTGGTGGCGTTGACTGATTATCGTGGGCAGCAT
ATATCGATCCATGAGCTCGTCGATGTGGTCAGCGAGTGCTTCGACCATCG
CGAGGTATGTATGAATGCAGAAAGCGGGTCATGAAATCAATCGAATCAGC
CATCGTCTTGCTATTTCCCTCTTGATCCTCCAAAGGGGATTGCGCAAGTT
CCTGACTGAGCCCGTGTTATTTGGAGCATTATTGGTCCCTCGTTTCTTGT
CCTTGGTTTGCTGTTGCGAGCCGCGATCAGCATCATGTGGAACCGCAAGT
CAGGGACTCGTTTTTCATTCGTGCCCATGTTTTACGTGGGCAAAACATTA
ATAATTGTTGTGGAATGCTGGATGTCGAATCTGCTCCTTTCGTTTTTTTT
TGTCCTTCTTGTGCCTCGCACCGTAAAAATCATTTTTACATGTGTTTTAA
GTTTTTTCGACGGCTTACGCCGCCATGCTAACTACCGCGAGTCCAAGATG
CATGAGCGTGGTGTGCTGACATGCGGGAAGTTGCGATTTTTTATTATTAT
TATGTGGATTGACATGACGCAAATGCATGGGTGTGTACATAGGTGTGCAC
GTTGAATGCCATTGTCTAGAGAATTTAGTCCGCGAACACCGAGTGTTGCT
GAGAAAGAGCGGTAAACAGTAAACAATGATAGAAACAGCCCTGAATCGGC
CCAGCGCGTTGACCGAGAGAGCATCACACAAACAGCCCACAGGGGGGAAG
AGGACCCGCCCACGAAAGAGAGAGGCTTTTGGCAGCGTCCGCCATGCTGA
GTCCCAACATTAATCTTTTGGCGACTAGCGACTCGTCGTATGGACTCAAA
TTGGCGAGCAACATGAAGCATGAAAAACACGGAGAGTCTCCTCTCTTGTC
ACAGCAGCAGCCAACATCCAACACCCAGGTATAAAAATATTCTGGAATAT
ATGCTACTGCTCCACTCCGTACGTCAAGCCAAAAATACACGAAATATGAA
ACCGCCTATCACCCACGACCCGTCCTTCGTCGCTAGCGTGCTTTAGGGTG
TTCATATGTTCATAGACTATATCCCGTGGGAGATGCAACTGATCCGAGGG
CACGAACCCAGGGCCATGGTCTGCAGATTTACATTCAACACGGGGCAACG
GTCTGCCGAATCCCTCTTAATTCCGATTGATTACACGGAGCGTGTAAGTG
CCATTTAATTCCCCCATTAGTTGCACGGGATCCGAAGTAGATGTGATAAC
AACGCAAAGATCGGGAAAGGAGAAAGAAAGAGAGAGACCAGAATGGCATA
CACAGAGAGATAGGGAGAGTGGCAGAGAGAGATCCCGAGAGGTGGAGAGA
AAGACAGACAAGGACAGAGAGACAGAAAGATATGTAGAGAACCCGGACTC
TAAAAATTGATTTTATTGACTGCCAGAAAACTGTTTTGCGAGAGAGAGGC
AGAACGAGAGGTCGAGCGACAGCAGTCACGACACCGCCGGCAGAAAGAAA
AGAGAGATAAGGACAAAAAGAGGCGCACAGGGCAACTGGATGGGGGTGGA
GAGAGCTATGTATGACACGATCGAAAGCTCTAAAAGTGTGAAAGGCGCGA
AATCTGAATGCAGCTCTGTCAGTGCACGGAGGCGTTCAGACCGCGTCAGT
GGCACTCTAAAACCAAGTGAATAACGCGCTGCTCTGTGAGAGCTCTAGGG
AAGTTTCCGTACGAGCAAGCGATTCTAGACAAATGTTAACCCGTATTTAT
GAGTGATGTGTAAAGTCCTACCTATATGTTTCCGTTCGTTCATTTATCTG
GTAAAGGCTTTGAGAAATACGGCTCGAGGAACCTCCCATCGATTCGCTAG
CTTTCTCGTTGATGTGTGTTCTTGTATTATATCCGCGTGCCCCCCCCCGT
TGGACGCGGTGCAGGAACGGGAGGCGAGACTGGTGGACGAGTTCAATACG
TTCCTTCCGCCTGGGCACGCGGTACGGTGGACCAAGATATGACAACCGTG
AAAAAGAGTGAACGGCAACACTAAGGCACACCGAGGAGCGGCGCTTTCGA
GGTCCTACCTGCGAAGTTCCGTCTGCGAAGTCCCATCTGACAGATGACAC
GACGCCGATGATCGCTCCGTTGTTTGGCCGCGAGGGGTTCGGCATCCAGT
GTACGAGAGGGGCCAAAATTGCATCAGTGGCTGTCGAGGGGGGGGCAACC
AGCGCCCCGGAGGAGAAGCTCGAAAGCTCAACCCTCATCTACGGTGTTCG
ATGACGTTTCGGCACCTTTCGATTGGCTGCTGGGTCTAGTGGCGGATGTA
TGTGTGAGGTTCAGGTTACGAATACGGCTGAGACTTCATTGGTTCGTGCC
ATTTGGACTGGGTAGGGTTCACGCCTCGGCCGATGTGAAGTCGTGGGCAA
GCGTGACTTGATTCGTAGCGGGTAGTGATTCGTTCGAGTCCATGAGGGAG
GAGTTCCATACTTCGAAGTATAGCATGTGCGACTGCACGCACCCCGGCGA
CCAGGGTTGCCCTGGCTTTGTCGTCATCCGTATCTATCTATCTATCGGGA
GTATCTATGTATCTATGTATCCCGAGGTCCGAGGTCCAGGGTTGGAGGCA
GCCTGAGACCACTGCCGCCATTGGCCCGGCACGAAAGATGCTTGCTTCGC
GGCTGTCGCCGTCGCATTGTTGACGTGGCTGAACGTATTAGCCCTTTGCT
CGCTGCACCCCTGGAAGGTTGGGTGGTATATAGGAGCTCAAAAACCTTCA
GCAGGACCTGTTCTTCTCGGTCGGCGTTGCTGGCGTTGGTCATATTGCAC
GCGCACCGCGGGGAAAAGGCGAATCGGAAGGGAGAGGGAGTGGGAATCGT
GGTGTTTTTGTGCGACTGCAGCTGAGCAGCTTCCAGTCTCGCATTTTCGT
CTCAAGAAAAGGCACCCTGTCGACACAGCCGCGGAAGCAGAGAAGACTCA
AGTCAAGCAGATGCTCTGAGATGGGGTGGGTGGCGGACGTAAAAGGGGTG
GGCTTTTTTCGTCTGTTGGGTTGGACAGCGTTGCGATCGTACTGGCAGCG
TTTGTGAGCACTGACTGCCAGTGAAGAAAAGTGCGTGTGACCGTCCACGT
GTGGAGAGGGTCACCAGCGCATGCAGATGGTGATGCTCTCAATCGTTCGG
CGTGCGTGTTATGATGGAGATGTTGTGATCGCACTACGGATGGTGCTGGC
AACATGTTTCTGTTTCAAGCCTGTTGTCTTCAGCTACTAGCGTTAACGCC
GTGTGACAGTTAGTGCCGTGCTCGGGCTCACGGCTACGTGTAGTTCGCTT
CGCTGGTTTCGGCGGCGATGTCGGCCTGCAATAGTTATTAGGTTCGTTGA
CCTTGGCTCCTGGTGTTGGCAATGTAGACGTGTGCGTTTCAAGGTGCTTG
GAGGTACTAAAATCATGGTGCAGTTCTACCTGGTTGCAACTACCTTTTGA
CTACAGGTTGAGAAGCGGCGCGTATTTTGTTGTTTTGATTGGTGTCGTCG
TGGTCCCTGGCCGCAGGTTTGTACCATGGTCAAAGTCGCCGAAATCTAGC
TGTTATTTTGCTCGTGTTGTGTCGTATGTTATCTGTTGTACAACGGCTGT
TTGGCTTCCAAGACTACGGGATTATGTTTTTCGGTACGCTACGTAGGCGA
CCTGCCCACAACCCCGTGTTTCTGAGTTGAGTGTTGCGCGAGACCTAAAG
TGGTCGAAGTGCTTCAGAATAAATTGCCGGCAGATATTCCCCTATATCTT
TCCGTGCAACCGGCTGTGCAGTCAAGTTTGTCGCAGCCAACGTTGTTGCT
TATCCGTGCGGAGGTGACACACGTGGAGAGTTGGTCAGTTCGAAAGAGGA
AGAATGGTGGAGGAGCTGTTGGGGGGTACGTGGGTGTACTGTAATCTACC
ATATTCCTGTCTGTGTATTATCTACGTTGGTGCTGTTTTTTGTCGTGATG
AAGCAGACGGGCTGGTGGTGCTGTTTGTTGAACACATTTTGCGTTCTTTC
TCTGCACGACCAGGAGTTGAGTGAAAAGTGCCAATTTGCGCTTGAAACTC
TCGAACTGCGGTGCTTGGTTTTGTAAAAGTGACGTTCTTCGAAGTATGTA
TGCGTACACTGGAAATTCCAGGTAAAACGCATTGGGGTTTAGGATTTGCC
CGAGAACAGACGGGTGGTGGCTGCCTGACAAAGGTTTTTCCGCCTGGTGT
ATCCGTCAGTATGTCTCTAACCTATTTGCATCAGCACTGCAGCAGAACCA
GGCTGTGTACCGCGTCGTGTACATCACAGTCAACATTCTCAGCCCGTACC
GCTGGAGATTATCCAATGAGGGTATCCCAAAAGCGAAGAATACATTTATT
TCCTGGGGGAGGATGCGCCAGCCGGGTTTTTTGCTGGGATGTCCCAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1255:19512..25809+ >mRNA_L-elsbetiae_contig1255.2064.1 ID=mRNA_L-elsbetiae_contig1255.2064.1|Name=mRNA_L-elsbetiae_contig1255.2064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:19512..25809+ (Laminarionema elsbetiae ELsaHSoW15) GGCGGCGTGGATCGGCACCAGACTTGGGCTCCCACGACGGCCGCCGAGGT GGCGGCGGCGGCGGCGGTGCGAGAGACTCAAGGCGTGGCGGCGGAAGCGG CGGCGAAGGCCGAGGCGGACGGGGTAGAAGTGGCGGCAGAAGCGACTGCG AAGGCGGAAGCGCACGGGGTAGTAGCCGAAAACGGGGGGCCAGTAGCCGC GGCAGGCGGAGGAGGAGGAGAAGTAGGCTTGCCGTCGCCGTCGCCGTGCC CGAAAGACGCTGAACGCGGCAACGGAACAAGTGGCGGCGGCGGCAGCGGT GGCAGCAGCGGGGACGTGTTGCCCCCTGCTCGCGATGACTCGCCTGTGCC GGGCGGCGTGGATCGGCACCAGACTTGGGCTCCCACGACGGCCGCCGAGG TGGCGGCGGCGGCGGCGGTGCGAGAGACTCAAGGCGTGGCGGCGGAAGCG GCGGCGAAGGCCGAGGCGGACGGGGTAGAAGTGGCGGCAGAAGCGACTGC GAAGGCGGAAGCGCACGGGGTAGTAGCCGAAAACGGGGGGCCAGTAGCCG CGGCAGGCGGAGGAGGAGGAGAAGTAGGCTTGCCGTCGCCGTCGCCGTGC CCGAAAGACGCTGAACGCGGCAACGGAACAAGTGGCGGCGGCGGCAGCGG TGGCAGCAGCGGGGACGTGTTGCCCCCTGCTCGCGATGACTCGCCTGTGC CGGGAGTGGCGAGTGACAACACTGGGGGAGACGCAATGTCGCCGAGAACA GCAGAAGAAAGCGGCGAAGAAAGTGGCGGCGTCTTGAAGGTGTTCATGGC GAGGGAGTGGCGAGTGACAACACTGGGGGAGACGCAATGTCGCCGAGAAC AGCAGAAGAAAGCGGCGAAGAAAGTGGCGGCGTCTTGAAGGTGTTCATGG CGAGGGTCCAGACCACGCTCGTCAAAGAATCGTTCGACAAGTTTGTGGTG GCGTTGACTGATTATCGTGGGCAGCATATATCGATCCATGAGCTCGTCGA TGTGGTCAGCGAGTGCTTCGACCATCGCGAGGGTCCAGACCACGCTCGTC AAAGAATCGTTCGACAAGTTTGTGGTGGCGTTGACTGATTATCGTGGGCA GCATATATCGATCCATGAGCTCGTCGATGTGGTCAGCGAGTGCTTCGACC ATCGCGAGGAACGGGAGGCGAGACTGGTGGACGAGTTCAATACGTTCCTT CCGCCTGGGCACGCGGTACGGTGGACCAAGATATGAGAACGGGAGGCGAG ACTGGTGGACGAGTTCAATACGTTCCTTCCGCCTGGGCACGCGGTACGGT GGACCAAGATATGA back to top
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