mRNA_L-elsbetiae_contig12549.2062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U5ACT6_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Stschapovia flagellaris TaxID=243166 RepID=A0A0U5ACT6_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.620e-16 Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 4 FFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114 FF +VY+TLTKGSVEEANPW+KGRGLAFPALPRVS K Sbjct: 50 FFFIVYLTLTKGSVEEANPWIKGRGLAFPALPRVSPK 86
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U4VFF5_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Saccorhiza polyschides TaxID=45365 RepID=A0A0U4VFF5_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 6.620e-15 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSS 111 FFF VVY+TLT+GSVE++NPWVKGRGLAFPALPR+ S Sbjct: 1 FFFFVVYLTLTRGSVEKSNPWVKGRGLAFPALPRLVS 37
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 4.440e-14 Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114 FFF VVY+TLTKGSVEEANPWVKGRGLAFPAL +VS+K Sbjct: 493 FFFFVVYVTLTKGSVEEANPWVKGRGLAFPALTQVSAK 530
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA) HSP 1 Score: 72.8 bits (177), Expect = 6.070e-14 Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114 FFF VVYITLT+GSVEE+NPWVKGRGLAFP LPR SSK Sbjct: 492 FFFFVVYITLTRGSVEESNPWVKGRGLAFPVLPRRSSK 529
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 1.090e-10 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114 FFF VVYITLT+GSVEE+NPWVKGRGLAF +P V K Sbjct: 485 FFFFVVYITLTQGSVEESNPWVKGRGLAFSPIPDVLLK 522
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 9.720e-10 Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRV 105 FFF VVY+TLT+GSVE++NPWV GRGLAFP+L ++ Sbjct: 389 FFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLAKM 423
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 9.730e-10 Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114 FFF VVYITLT+GSV ++N WV+GRGLAFP LPR SS+ Sbjct: 492 FFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPRRSSQ 529
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 4.640e-9 Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAF 87 FFF VVY+TLT+GSVEE+NPWVKGRGLAF Sbjct: 497 FFFYVVYVTLTRGSVEESNPWVKGRGLAF 525
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM) HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8 Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVS 108 FFF +VY+TLT+G +EE+NPWVK RG+AFP + S Sbjct: 492 FFFYIVYLTLTEGHLEESNPWVKNRGIAFPTIESKS 527
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE) HSP 1 Score: 47.4 bits (111), Expect = 5.580e-5 Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1 Query: 13 VVYITLTKGSVEEANPWVKGRGLAFPAL 96 VVY+TLT+G +E++NPWV+ RG+AFP + Sbjct: 496 VVYLTLTQGHLEDSNPWVENRGVAFPVI 523 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12549.2062.1 >prot_L-elsbetiae_contig12549.2062.1 ID=prot_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK*back to top mRNA from alignment at L-elsbetiae_contig12549:4972..5088- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12549.2062.1 ID=mRNA_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig12549:4972..5088- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12549:4972..5088- >mRNA_L-elsbetiae_contig12549.2062.1 ID=mRNA_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig12549:4972..5088- (Laminarionema elsbetiae ELsaHSoW15)back to top |