mRNA_L-elsbetiae_contig12549.2062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12549.2062.1
Unique NamemRNA_L-elsbetiae_contig12549.2062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U5ACT6_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Stschapovia flagellaris TaxID=243166 RepID=A0A0U5ACT6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.620e-16
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1
Query:    4 FFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114
            FF +VY+TLTKGSVEEANPW+KGRGLAFPALPRVS K
Sbjct:   50 FFFIVYLTLTKGSVEEANPWIKGRGLAFPALPRVSPK 86          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U4VFF5_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Saccorhiza polyschides TaxID=45365 RepID=A0A0U4VFF5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.620e-15
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSS 111
            FFF VVY+TLT+GSVE++NPWVKGRGLAFPALPR+ S
Sbjct:    1 FFFFVVYLTLTRGSVEKSNPWVKGRGLAFPALPRLVS 37          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.440e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114
            FFF VVY+TLTKGSVEEANPWVKGRGLAFPAL +VS+K
Sbjct:  493 FFFFVVYVTLTKGSVEEANPWVKGRGLAFPALTQVSAK 530          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 72.8 bits (177), Expect = 6.070e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114
            FFF VVYITLT+GSVEE+NPWVKGRGLAFP LPR SSK
Sbjct:  492 FFFFVVYITLTRGSVEESNPWVKGRGLAFPVLPRRSSK 529          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.090e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114
            FFF VVYITLT+GSVEE+NPWVKGRGLAF  +P V  K
Sbjct:  485 FFFFVVYITLTQGSVEESNPWVKGRGLAFSPIPDVLLK 522          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.720e-10
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRV 105
            FFF VVY+TLT+GSVE++NPWV GRGLAFP+L ++
Sbjct:  389 FFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLAKM 423          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.730e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK 114
            FFF VVYITLT+GSV ++N WV+GRGLAFP LPR SS+
Sbjct:  492 FFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPRRSSQ 529          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.640e-9
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAF 87
            FFF VVY+TLT+GSVEE+NPWVKGRGLAF
Sbjct:  497 FFFYVVYVTLTRGSVEESNPWVKGRGLAF 525          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVS 108
            FFF +VY+TLT+G +EE+NPWVK RG+AFP +   S
Sbjct:  492 FFFYIVYLTLTEGHLEESNPWVKNRGIAFPTIESKS 527          
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 5.580e-5
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1
Query:   13 VVYITLTKGSVEEANPWVKGRGLAFPAL 96
            VVY+TLT+G +E++NPWV+ RG+AFP +
Sbjct:  496 VVYLTLTQGHLEDSNPWVENRGVAFPVI 523          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12549.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0U5ACT6_9PHAE3.620e-1686.49Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=St... [more]
A0A0U4VFF5_9PHAE6.620e-1581.08Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Sa... [more]
E6ZES6_ECTSI4.440e-1486.84Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0S2I710_SACJA6.070e-1486.84Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A8E8PDM6_9PHAE1.090e-1076.32Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
A0A0U4ZTN0_9PHAE9.720e-1071.43Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A8F0K0Q8_9PHAE9.730e-1073.68Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A5K7TLP3_9PHAE4.640e-986.21Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A0U1XAH8_SARHM5.680e-861.11Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A1L6KY02_9PHAE5.580e-560.71Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12549contigL-elsbetiae_contig12549:4972..5088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815447.6133711-CDS-L-elsbetiae_contig12549:4971..50881622815447.6133711-CDS-L-elsbetiae_contig12549:4971..5088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12549 4972..5088 -
1691682902.8246393-CDS-L-elsbetiae_contig12549:4971..50881691682902.8246393-CDS-L-elsbetiae_contig12549:4971..5088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12549 4972..5088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12549.2062.1prot_L-elsbetiae_contig12549.2062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12549 4972..5088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12549.2062.1

>prot_L-elsbetiae_contig12549.2062.1 ID=prot_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
FFFVVVYITLTKGSVEEANPWVKGRGLAFPALPRVSSK*
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mRNA from alignment at L-elsbetiae_contig12549:4972..5088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12549.2062.1 ID=mRNA_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig12549:4972..5088- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTTTTTGTTGTTGTTTATATTACACTTACAAAAGGTTCTGTTGAAGA AGCAAATCCTTGGGTAAAAGGTAGAGGTTTAGCTTTCCCAGCTTTACCTC GTGTGTCTTCTAAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12549:4972..5088-

>mRNA_L-elsbetiae_contig12549.2062.1 ID=mRNA_L-elsbetiae_contig12549.2062.1|Name=mRNA_L-elsbetiae_contig12549.2062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig12549:4972..5088- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTTTTTGTTGTTGTTTATATTACACTTACAAAAGGTTCTGTTGAAGA
AGCAAATCCTTGGGTAAAAGGTAGAGGTTTAGCTTTCCCAGCTTTACCTC
GTGTGTCTTCTAAATAATTTTTTTTTGTTGTTGTTTATATTACACTTACA
AAAGGTTCTGTTGAAGAAGCAAATCCTTGGGTAAAAGGTAGAGGTTTAGC
TTTCCCAGCTTTACCTCGTGTGTCTTCTAAATAA
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