mRNA_L-elsbetiae_contig12544.2059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12544.2059.1
Unique NamemRNA_L-elsbetiae_contig12544.2059.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12544.2059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12544contigL-elsbetiae_contig12544:42..746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12544.2059.1prot_L-elsbetiae_contig12544.2059.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12544 175..746 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815447.4318454-UTR-L-elsbetiae_contig12544:41..1741622815447.4318454-UTR-L-elsbetiae_contig12544:41..174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12544 42..174 +
1691682902.7493496-UTR-L-elsbetiae_contig12544:41..1741691682902.7493496-UTR-L-elsbetiae_contig12544:41..174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12544 42..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815447.4437973-CDS-L-elsbetiae_contig12544:174..3601622815447.4437973-CDS-L-elsbetiae_contig12544:174..360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12544 175..360 +
1691682902.7595701-CDS-L-elsbetiae_contig12544:174..3601691682902.7595701-CDS-L-elsbetiae_contig12544:174..360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12544 175..360 +
1622815447.4590576-CDS-L-elsbetiae_contig12544:665..7461622815447.4590576-CDS-L-elsbetiae_contig12544:665..746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12544 666..746 +
1691682902.7693021-CDS-L-elsbetiae_contig12544:665..7461691682902.7693021-CDS-L-elsbetiae_contig12544:665..746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12544 666..746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12544.2059.1

>prot_L-elsbetiae_contig12544.2059.1 ID=prot_L-elsbetiae_contig12544.2059.1|Name=mRNA_L-elsbetiae_contig12544.2059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MFHAGRRRTVMERAHSEFLMPHCCLAITTPGAKQLDQANETMKASIPSLY
SAIRFVAYIRQQGVRMPAHLESTDRAMKAEKARAGQDRR
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mRNA from alignment at L-elsbetiae_contig12544:42..746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12544.2059.1 ID=mRNA_L-elsbetiae_contig12544.2059.1|Name=mRNA_L-elsbetiae_contig12544.2059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=705bp|location=Sequence derived from alignment at L-elsbetiae_contig12544:42..746+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTTTTGGGCCATTGATACCGACAGCCTGCTGATGACATATCGGAACA
GTAGTTTTCCCGTTCGAATGTATCATTGTATTTATAATTGATAAGGCCGT
TTGATCGCTCTAGAAGTTATTTGGCCTTGATGCATGTTCCACGCAGGCAG
GCGGCGTACTGTGATGGAAAGAGCTCACTCCGAATTTCTGATGCCTCATT
GTTGTCTTGCTATCACCACACCAGGGGCAAAACAACTTGATCAGGCTAAC
GAGACCATGAAAGCTTCTATCCCAAGCCTCTATAGCGCTATTCGCTTCGT
GGCATACATCCGCCAGCAGGTAAAACCGCAATGTCGGTGGACAGTGAAGA
ACAATGGCGGGAGGAAATTCAGCGCTGTTGGTATGCTAAATAAAGTTCAC
AAAAGCGAGCTTTCTTCAGGTTATCAACGACTTGTCCCTGTGCAGTGCGT
ATCTGTATTGTAATGCGATGGAACTTTATTCCAGGTCTGGAATGAAACTG
TCATACACTGACTGCCGTCATATGAAAAAATGGTCCGAGATGTCGTCAAC
ACGTATATGTAGAACGCTCACTGTGTTAACATCACCCCGTCCTCCTTTTG
TGTCGGCTTTCTGCGCCTATTTAGGGCGTTCGAATGCCGGCCCATCTCGA
GAGCACAGACCGCGCAATGAAAGCAGAGAAGGCAAGAGCAGGGCAAGATC
GACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12544:42..746+

>mRNA_L-elsbetiae_contig12544.2059.1 ID=mRNA_L-elsbetiae_contig12544.2059.1|Name=mRNA_L-elsbetiae_contig12544.2059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig12544:42..746+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCACGCAGGCAGGCGGCGTACTGTGATGGAAAGAGCTCACTCCGA
ATTTCTGATGCCTCATTGTTGTCTTGCTATCACCACACCAGGGGCAAAAC
AACTTGATCAGGCTAACGAGACCATGAAAGCTTCTATCCCAAGCCTCTAT
AGCGCTATTCGCTTCGTGGCATACATCCGCCAGCAGATGTTCCACGCAGG
CAGGCGGCGTACTGTGATGGAAAGAGCTCACTCCGAATTTCTGATGCCTC
ATTGTTGTCTTGCTATCACCACACCAGGGGCAAAACAACTTGATCAGGCT
AACGAGACCATGAAAGCTTCTATCCCAAGCCTCTATAGCGCTATTCGCTT
CGTGGCATACATCCGCCAGCAGGGCGTTCGAATGCCGGCCCATCTCGAGA
GCACAGACCGCGCAATGAAAGCAGAGAAGGCAAGAGCAGGGCAAGATCGA
CGGGGCGTTCGAATGCCGGCCCATCTCGAGAGCACAGACCGCGCAATGAA
AGCAGAGAAGGCAAGAGCAGGGCAAGATCGACGG
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