mRNA_L-elsbetiae_contig1254.2057.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1254.2057.1
Unique NamemRNA_L-elsbetiae_contig1254.2057.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1254.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1254contigL-elsbetiae_contig1254:11389..11953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1254.2057.1prot_L-elsbetiae_contig1254.2057.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1254 11438..11767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.9646525-UTR-L-elsbetiae_contig1254:11388..114371622815446.9646525-UTR-L-elsbetiae_contig1254:11388..11437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1254 11389..11437 +
1691682902.423265-UTR-L-elsbetiae_contig1254:11388..114371691682902.423265-UTR-L-elsbetiae_contig1254:11388..11437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1254 11389..11437 +
1622815446.990432-UTR-L-elsbetiae_contig1254:11767..119531622815446.990432-UTR-L-elsbetiae_contig1254:11767..11953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1254 11768..11953 +
1691682902.455657-UTR-L-elsbetiae_contig1254:11767..119531691682902.455657-UTR-L-elsbetiae_contig1254:11767..11953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1254 11768..11953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.9767332-CDS-L-elsbetiae_contig1254:11437..117671622815446.9767332-CDS-L-elsbetiae_contig1254:11437..11767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1254 11438..11767 +
1691682902.4440439-CDS-L-elsbetiae_contig1254:11437..117671691682902.4440439-CDS-L-elsbetiae_contig1254:11437..11767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1254 11438..11767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1254.2057.1

>prot_L-elsbetiae_contig1254.2057.1 ID=prot_L-elsbetiae_contig1254.2057.1|Name=mRNA_L-elsbetiae_contig1254.2057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MYLPQTAQLMQIGGVNTDKVNWGTSTRIAAGTRRYVCVSISTRSCTGGDP
YPTHFSLHDPRPEDFIEEYRTKWRKQNGPSHSTYGTKRSQPYKGSSMSNT
STRRLMGII*
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mRNA from alignment at L-elsbetiae_contig1254:11389..11953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1254.2057.1 ID=mRNA_L-elsbetiae_contig1254.2057.1|Name=mRNA_L-elsbetiae_contig1254.2057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=565bp|location=Sequence derived from alignment at L-elsbetiae_contig1254:11389..11953+ (Laminarionema elsbetiae ELsaHSoW15)
AGAACGTGAAAAATGACCGAGACCTACGCTGTCTGTGGTTCGCGCAGATA
TGTATCTACCCCAAACCGCTCAGCTCATGCAAATCGGTGGGGTCAATACG
GACAAAGTGAACTGGGGCACCAGCACGCGCATTGCAGCAGGCACGCGTAG
GTATGTATGTGTATCTATATCTACTAGGTCCTGCACAGGCGGAGATCCGT
ACCCAACACATTTCTCTCTCCATGATCCTCGCCCGGAGGATTTTATCGAA
GAATACCGTACCAAATGGAGAAAGCAGAACGGGCCCAGCCACAGCACATA
CGGCACCAAGCGCAGCCAGCCATACAAGGGGTCGTCGATGTCCAACACCA
GCACCAGACGGCTGATGGGCATCATCTGACATGCTGCTGTTGTATCGCGC
CGCCTCCGGATGCCGGTAAACAGTAAACAGGTGTCGTGTGTCGTGTCTCC
TCAGGTAATAAATCCGGTTCCCACCAAATCCCGTTCCCGCCAGAGGAATA
GCAGGGAGGGCGAGAGAAGGTCGGAGAAAGGGTGTAAGGCTGAGGGAACA
AGGGAACGAGACAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1254:11389..11953+

>mRNA_L-elsbetiae_contig1254.2057.1 ID=mRNA_L-elsbetiae_contig1254.2057.1|Name=mRNA_L-elsbetiae_contig1254.2057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig1254:11389..11953+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCTACCCCAAACCGCTCAGCTCATGCAAATCGGTGGGGTCAATAC
GGACAAAGTGAACTGGGGCACCAGCACGCGCATTGCAGCAGGCACGCGTA
GGTATGTATGTGTATCTATATCTACTAGGTCCTGCACAGGCGGAGATCCG
TACCCAACACATTTCTCTCTCCATGATCCTCGCCCGGAGGATTTTATCGA
AGAATACCGTACCAAATGGAGAAAGCAGAACGGGCCCAGCCACAGCACAT
ACGGCACCAAGCGCAGCCAGCCATACAAGGGGTCGTCGATGTCCAACACC
AGCACCAGACGGCTGATGGGCATCATCTGAATGTATCTACCCCAAACCGC
TCAGCTCATGCAAATCGGTGGGGTCAATACGGACAAAGTGAACTGGGGCA
CCAGCACGCGCATTGCAGCAGGCACGCGTAGGTATGTATGTGTATCTATA
TCTACTAGGTCCTGCACAGGCGGAGATCCGTACCCAACACATTTCTCTCT
CCATGATCCTCGCCCGGAGGATTTTATCGAAGAATACCGTACCAAATGGA
GAAAGCAGAACGGGCCCAGCCACAGCACATACGGCACCAAGCGCAGCCAG
CCATACAAGGGGTCGTCGATGTCCAACACCAGCACCAGACGGCTGATGGG
CATCATCTGA
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