mRNA_L-elsbetiae_contig12539.2055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig12539.2055.1
Unique Name	mRNA_L-elsbetiae_contig12539.2055.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D7FR94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR94_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 3.070e-113
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 1

Query:    1 MKNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            MKNVPATP LCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEA+SGELTD M EYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISS
Sbjct:    1 MKNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAISGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISS 164

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: A0A6H5JVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ6_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.760e-107
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 1

Query:    4 KNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            KNVPATP L DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMD  GTPCEEIF AVSGELTDDMKE+VQSLRANIVSTCGDQF FKDGEELASFDDIVHDPMW+I TRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS
Sbjct:   15 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDMKEHVQSLRANIVSTCGDQFTFKDGEELASFDDIVHDPMWLIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 177

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D7FVQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.280e-104
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 1

Query:    1 MKNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            MKNVPATP LCDNSRVYFTT+GAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTD M EYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISS
Sbjct:    1 MKNVPATPKLCDNSRVYFTTKGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISS 164

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D7FGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY2_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.410e-104
Identity = 157/164 (95.73%), Postives = 159/164 (96.95%), Query Frame = 1

Query:    1 MKNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            +KNVPATP LCDNSRVYFTT+GAQYMALDVGG GLCALLGVIAVAMDDVGTPCEEIFEAVSGELTD M EYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLV CDAGGPISS
Sbjct:   14 IKNVPATPKLCDNSRVYFTTKGAQYMALDVGGVGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISS 177

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 7.510e-100
Identity = 153/163 (93.87%), Postives = 154/163 (94.48%), Query Frame = 1

Query:    4 KNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            KNVPA P L DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMD  GTPCEEIF AVSG+LTDDMKEYVQSLRA  VSTCGDQFAFKDGEELASFDDIVHDPMWVI TRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS
Sbjct:   15 KNVPAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 175

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 4.510e-70
Identity = 113/119 (94.96%), Postives = 113/119 (94.96%), Query Frame = 1

Query:  136 MDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            MD  GTPCEEIF  VSGELTDDMKEYVQSLRANIVSTCGD FAFKDGEELASFDDIVHDPMWVI TRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS
Sbjct:    1 MDAAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 119

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.050e-38
Identity = 76/151 (50.33%), Postives = 92/151 (60.93%), Query Frame = 1

Query:   43 RVYFTTEGAQYMALDVGGGGLCA-LLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISS 492
            RV  T EG +Y  +DV G   C  +L  IA+ M     P E+I  +VSG LTDDM +YV +LR  +V      F+F DGEELA FDD+V +PMWVI  R MWE V L   G  DGRA  L+ K L L G RIVKH++G L PCD G P+ S
Sbjct:    3 RVMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFADGEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPS 153

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BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Match: D7FZH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 9.420e-32
Identity = 72/151 (47.68%), Postives = 96/151 (63.58%), Query Frame = 1

Query:   34 DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFA-FKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHE-DGHLVPCDAGG 480
            +  RVY T +GA Y +LDV GGG+CA+L +IA+ M   G P   +F AV GE+T +M+ YVQ LR  IV     +     DGEE A FDD+V +P   I T+ MW +V L   G+LD  A+ LLA++ GL+GFR+V+ + DG LVPCD  G
Sbjct:   33 EEGRVYHTPDGATYRSLDVAGGGMCAVLTLIALYMISNGDPYSFVFAAVCGEVTSEMRGYVQCLRGIIVHMSEGRITHLGDGEESAPFDDVVENPDHEIETKGMWRMVMLAARGFLDTLAMDLLAEYFGLNGFRVVRPDGDGLLVPCDYKG 183

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12539.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
D7FR94_ECTSI	3.070e-113	96.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JVJ6_9PHAE	1.760e-107	94.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FVQ8_ECTSI	1.280e-104	96.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FGY2_ECTSI	1.410e-104	95.73	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LK60_ECTSI	7.510e-100	93.87	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LH64_ECTSI	4.510e-70	94.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LPN8_ECTSI	1.050e-38	50.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FZH0_ECTSI	9.420e-32	47.68	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12539	contig	L-elsbetiae_contig12539:5069..5560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-26_002310.1
Exons	1
Model size	492
Cds size	492
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815446.929457-CDS-L-elsbetiae_contig12539:5068..5560	1622815446.929457-CDS-L-elsbetiae_contig12539:5068..5560	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12539 5069..5560 +
1691682902.407502-CDS-L-elsbetiae_contig12539:5068..5560	1691682902.407502-CDS-L-elsbetiae_contig12539:5068..5560	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig12539 5069..5560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12539.2055.1	prot_L-elsbetiae_contig12539.2055.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig12539 5069..5560 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig12539:5069..5560+
coding sequence from alignment at L-elsbetiae_contig12539:5069..5560+

protein sequence of mRNA_L-elsbetiae_contig12539.2055.1

>prot_L-elsbetiae_contig12539.2055.1 ID=prot_L-elsbetiae_contig12539.2055.1|Name=mRNA_L-elsbetiae_contig12539.2055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MKNVPATPTLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVG
TPCEEIFEAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKDGEELASFDD
IVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHED
GHLVPCDAGGPISS

mRNA from alignment at L-elsbetiae_contig12539:5069..5560+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig12539.2055.1 ID=mRNA_L-elsbetiae_contig12539.2055.1|Name=mRNA_L-elsbetiae_contig12539.2055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig12539:5069..5560+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACGTCCCGGCGACCCCGACGCTTTGCGACAACAGCCGCGTGTA
CTTCACGACTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCG
GTCTGTGTGCTCTTCTCGGCGTCATCGCTGTGGCGATGGACGACGTAGGA
ACCCCTTGTGAGGAGATTTTCGAAGCCGTCAGCGGCGAGCTCACGGACGA
CATGAAGGAGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCG
GCGACCAGTTCGCCTTCAAGGACGGTGAAGAGCTGGCTAGCTTCGACGAC
ATCGTCCACGACCCGATGTGGGTGATTGCGACGAGGGCGATGTGGGAGCT
GGTGACACTTCATCCAACTGGATATCTCGACGGAAGGGCGGTGTGGCTGT
TGGCGAAGTTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGAC
GGCCACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCC

Coding sequence (CDS) from alignment at L-elsbetiae_contig12539:5069..5560+

>mRNA_L-elsbetiae_contig12539.2055.1 ID=mRNA_L-elsbetiae_contig12539.2055.1|Name=mRNA_L-elsbetiae_contig12539.2055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig12539:5069..5560+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACGTCCCGGCGACCCCGACGCTTTGCGACAACAGCCGCGTGTA
CTTCACGACTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCG
GTCTGTGTGCTCTTCTCGGCGTCATCGCTGTGGCGATGGACGACGTAGGA
ACCCCTTGTGAGGAGATTTTCGAAGCCGTCAGCGGCGAGCTCACGGACGA
CATGAAGGAGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCG
GCGACCAGTTCGCCTTCAAGGACGGTGAAGAGCTGGCTAGCTTCGACGAC
ATCGTCCACGACCCGATGTGGGTGATTGCGACGAGGGCGATGTGGGAGCT
GGTGACACTTCATCCAACTGGATATCTCGACGGAAGGGCGGTGTGGCTGT
TGGCGAAGTTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGAC
GGCCACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCATGAAGAA
CGTCCCGGCGACCCCGACGCTTTGCGACAACAGCCGCGTGTACTTCACGA
CTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCGGTCTGTGT
GCTCTTCTCGGCGTCATCGCTGTGGCGATGGACGACGTAGGAACCCCTTG
TGAGGAGATTTTCGAAGCCGTCAGCGGCGAGCTCACGGACGACATGAAGG
AGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCGGCGACCAG
TTCGCCTTCAAGGACGGTGAAGAGCTGGCTAGCTTCGACGACATCGTCCA
CGACCCGATGTGGGTGATTGCGACGAGGGCGATGTGGGAGCTGGTGACAC
TTCATCCAACTGGATATCTCGACGGAAGGGCGGTGTGGCTGTTGGCGAAG
TTCCTCGGGTTGCACGGATTTAGGATAGTCAAGCACGAAGACGGCCACTT
GGTCCCATGTGATGCCGGGGGCCCCATCTCCTCC