mRNA_L-elsbetiae_contig12538.2054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12538.2054.1
Unique NamemRNA_L-elsbetiae_contig12538.2054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12538.2054.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 5.970e-47
Identity = 77/95 (81.05%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 LSAVFWDGILITGGYFWVANNNNPSHDRWITLSFGATQTVAGMLMAVAVAFTMTGERFASLRVCLGTSQRVKFHFILTIFGTCVYLYNGVVLLFD 285
            LSAVFW+G+LITGGYFWV N +N SH RWI+LSFGATQTVAG+LMA+ V FTMTGERF+SLRVC  TSQRVKFHFILTIFGT VYLYNG+VL+FD
Sbjct:  125 LSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFD 219
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BLAST of mRNA_L-elsbetiae_contig12538.2054.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.460e-46
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 LSAVFWDGILITGGYFWVANNNNPSHDRWITLSFGATQTVAGMLMAVAVAFTMTGERFASLRVCLGTSQRVKFHFILTIFGTCVYLYNGVVLLFD 285
            LSAVFW+G+LITGGYFWV N  N SH RWI+LSFGATQTVAGMLMA+AV FT++GERF+SL+VC  TSQRVKFHFILTIFGT VYLYNG+VL+FD
Sbjct:  125 LSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFD 219
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BLAST of mRNA_L-elsbetiae_contig12538.2054.1 vs. uniprot
Match: A0A7S2US30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US30_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.120e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    4 SAVFWDGILITGGYFWVANNNNPSHDRWITLSFGATQTVAGMLMAVAVAFTMTGERFASLRVCLGTSQRVKFHFILTIFGTCVYLYNGVVLLFD 285
            SA++WD ++IT GYFWV + N P H RWI LSF   Q++ GM+M V +   ++   + S   C   S RV+   +L+ F     +YNG+  + D
Sbjct:  162 SALYWDMLIITNGYFWVWSEN-PEHGRWINLSFTIVQSLVGMVMLVLLGVCISF--YKSAVKCFKNSSRVRIFTVLSTFAFLCNVYNGISSMLD 252
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12538.2054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE5.970e-4781.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI1.460e-4680.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2US30_9STRA1.120e-1138.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12538contigL-elsbetiae_contig12538:838..4913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12538.2054.1prot_L-elsbetiae_contig12538.2054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12538 838..4913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.868622-CDS-L-elsbetiae_contig12538:837..9021622815446.868622-CDS-L-elsbetiae_contig12538:837..902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 838..902 -
1691682902.37524-CDS-L-elsbetiae_contig12538:837..9021691682902.37524-CDS-L-elsbetiae_contig12538:837..902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 838..902 -
1622815446.879864-CDS-L-elsbetiae_contig12538:2913..30641622815446.879864-CDS-L-elsbetiae_contig12538:2913..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 2914..3064 -
1691682902.3865736-CDS-L-elsbetiae_contig12538:2913..30641691682902.3865736-CDS-L-elsbetiae_contig12538:2913..3064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 2914..3064 -
1622815446.8901238-CDS-L-elsbetiae_contig12538:4844..49131622815446.8901238-CDS-L-elsbetiae_contig12538:4844..4913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 4845..4913 -
1691682902.3951294-CDS-L-elsbetiae_contig12538:4844..49131691682902.3951294-CDS-L-elsbetiae_contig12538:4844..4913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12538 4845..4913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12538.2054.1

>prot_L-elsbetiae_contig12538.2054.1 ID=prot_L-elsbetiae_contig12538.2054.1|Name=mRNA_L-elsbetiae_contig12538.2054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
LSAVFWDGILITGGYFWVANNNNPSHDRWITLSFGATQTVAGMLMAVAVA
FTMTGERFASLRVCLGTSQRVKFHFILTIFGTCVYLYNGVVLLFD
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mRNA from alignment at L-elsbetiae_contig12538:838..4913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12538.2054.1 ID=mRNA_L-elsbetiae_contig12538.2054.1|Name=mRNA_L-elsbetiae_contig12538.2054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4076bp|location=Sequence derived from alignment at L-elsbetiae_contig12538:838..4913- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCGCCGTCTTCTGGGACGGCATTCTCATCACGGGGGGGTACTTTTG
GGTGGCAAACAACAACAACGTGAGTGTGCCGTGTTGTGCGCCGTGATGTC
TTATGTATGTAATATATAGATATGCTGCTGTTGTTGTTTCTCGCACTAGC
TCTCTTTTCTATAGTCCAAAACATCCTTGGGGGGCCCGTGGTTACAAAAC
AAGGCATACTCGACGATATGTTGTTGTTGTTGTTGCTGTTCTCGCGTTAG
TTCTCTATTATAAATATGTCCAAAACATATCCTTTGAGGGCCTGTCCGTG
GTCACAAAACACTTAAGGGGGCACACTCGACGCCGCGGAAAAAAAGTACA
ACAAAAAAATATGGTACGTACATACGCGGCCGGCGAAACTAAACTGAACT
CCGAGGGGTCTTTCGTCTCGCCGACAGAGTGTGTCTGGTGGATCTATCTG
CAATTGTCGGAGGGCAAACGAAAAAAAAACAAAAAAACAAGAAAAAACAA
AAAAGCAAGAAAATAATACATTTTGTTTTTTAAACGGGGGATGATGGGTG
TGACTCTCAGCCGTATCTATCCGTTGACAATCCCGCTGACAGTTCTGTTG
TCTCTTTTTTTTTTTTACGCATTAAAAACCGCTCCGATCTCTCTATCCAC
TACACCTCCATGAGTCCGTACTAATCCAACACCGACGCGGTCGATATCAT
GTGATATACGGTCCCTTGATATAACATGATTCCCGTGATATATTTGATAT
GATATGATTAACCAAGGTGATACCGTGTGATATAACGCCGAGCCAACTTT
AATTAATCCATACAAATCCAAGTCAATAAGCATTTCCCGACTTTTAGGAA
ACGATATCATTGAGTTTATTTGAGCTTGGAAATGTTCCGTTATATTTTAA
GCGAATGATGCGATTTATGTTCAGGTTTTTGTCATGATCTATCTGCAATT
GTCGGAGGGCAAATAAAATAATAATATCATGATGAGCATCACCAAATATC
CTATGATATATCACTTGATGTGATACTTGTATGATTCACGTGATGTATCA
CTTGATATGATATACAATATCAAAGGGGGTTCAGGGGGATGTTTCAAACA
CTAAATCGTGTCCGCGCCTCCTCGGCCCTCAGCTGATTTGAACCTCCTCT
CTCTATCTACGGTGGTAGCTCGGAGGTTGTATTCCGGCATCTCTCCTTCT
GACCGCTGACTGCTGCATTCACTGATAGGATATGCTTAATCAAAATATCG
TGTGATATACATATCATGATATGGATCACAAAATATCATGTGATATATCA
TGATATATCACAAAAACGATGTGTCCGCCGCGCCTCCTCGGCCCTCAACC
GCGATTCGAACCTCCTCTCTATTTATCTACGGTGAGATTTGGCCTTGGAG
TGTGTACTCCAACATCTCTCTCTGACCACTGACTGCATTAATTCCCTCTG
TTCCTCCCATCCCCTCCTTTCCTCCCATTCCCTCTTTTCCTGCCATCCCC
TCATTCCCTCTCATTCCATCCTTTCCTCCCATCCCCCCGTTTCCTGCCAT
CCATCCCCTCCTTTCCTCTCATTCCCCCTCTTTTCCTCCCATTCTCTCCT
TTCCTCTCATTCCCTCCTTTCCAGCCATTTCCTCTTTTCCTCTCATCCCC
TCATTTCCTGTCATTCCATAATTTCCTCCCATTCCCTCTTTTCCTCTCAT
CCCCTCATTTCCTCCCATTCCCTCTTTTCCTCCCATCCCCCCGTTTCCTG
CCATTAATCCCCTCCTTTCCTCCCATTTCCTCTGTCCCTGCTTCCTACGC
CCTATCATCCACGGTGCCCCGCCCCTTGCTCTATCCCCCTCTTTTGCAGC
CGAGCCATGACCGCTGGATCACGCTGTCGTTTGGAGCTACCCAGACCGTG
GCGGGCATGCTCATGGCCGTAGCGGTGGCGTTTACCATGACGGGGGAGAG
GTTTGCAAGCCTCAGGGTCTGCCTCGGGACGAGCCAGCGCGTCAAATTTC
GTGAGTATTTATTTCTTTACACGAGGTTATTAAGTACTTTGGGGGTTCCG
TGGATGCTCCGGGGGTTGGGTGGCATGTGTGGGCAGACCGGGCTCCCTGA
CCGGGGGGGCGGTTTGCAAGCCTCAGGATTTTCCCCGGGACGAAGCCAGC
GCGTCAACTGTTGTGGGTTTTTTTTGGTTTCTAAAGAGGTTACGTGGGCT
CTTGGGGGGTTCCGGGGAGCGTCGGGGGGGGGGGGGGATGTGTGGAAAGA
CCGGGGCCCCTGACCGGAGGGTGGTTTGCAAGCCTCAGGGTTTGCCTCGG
GACGACCCAGCGCGTCAAGTTCCGTGAGAGGGTTTGTAGTGAGCACTAGA
ACTCGTTTGTTTATCTACATAATAATAATAGATGGTGTGCACATTACACA
AACCTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAAACCCTTCTC
GCGACAAAAGTCTTAGGCAAGCACCGGACCGCAGAAGGGGGGAGTGGGGG
GCTTTGCGGAAAGGAACCCTTCTGTGTGACCACGGTTCAGTACTCTGGCA
AGTTGTCCTTGTGACAAGGAGCCTTTTTTTTTTTTTTTTTTTTTTTTTTN
NNNNNNNNNGGAGAGGGGTGTTTACATCTTGTCGTTTGTAATTTTGCTTT
GGGGGCTTTTTTTTTTTTTTTTTTTGCTCTTCCTACCTTTCTTTATAGTG
GTGGTCATATATTATTTTCCAATAATATATAGATGCATTGTCTACTGTAA
TTTATTTTAAGGTGTCGAAGGTTGAATAATTGCTGCAAACACGTTGTTGT
TATTGTAGCGCTTATTTTTTGTTGCATTTCTCTATATGGTGGTCATATAT
TATTTCCCAAAGAATTTAGATGCATACTGTATTTATTTAAGGTGTCGAAG
GTTGAATAATTGCTGCAAGCGCGTTGTTATGTAGCGCTTGTGAACATCAC
TCTCCTCACGGTCTACGTCGAAAGCGGGGGAGCTGAAACGGCCCACAGCA
CGAAAAATCAAATGGCCCAAACCTCGGGGAGATGACAGCCGGGTGATATG
CGGCGTCCGACCAGCCCATTTGTTGGCAGATACATAGATGGCGGATGGTC
GATGGGACACGACGAAGTTCTTTTCTGAAAAACGGTTATTGTACTGGCGC
GAGGCCAAAGTTAACTCTTGTCGGAGGCGCCCCTGCAGTATAAACGTGCT
CTTGTATTAACTCGAGAGAGTGTAAGGCAGTGTGCAACGGGTCCGCCCGG
GGAGAGAGAAGGGTCCCCGTGACATACAGATTATCATACCACTACAACAA
CAGCGTACCCCCCATATCGGCCATCCCAGACCAGTATCTTTGCCCGAGTA
CCACAAACAGGGTGTTATCTTGCGTCGTATACGGTACATCGCTGGAGTAT
TTGAGCTTTGAAAATCGGTCTAGGGGGGGTGTTGTCTGTGTCGTATACCG
TACCTCTCTGGGGTAACTGAGCTTTGAAAATCGGTCCAGGGTTTGTGTGT
TTGTGTGCTGGTGCGAGAGGACTAAGTTATCTCGCTGCCGACTCTTGTCG
GAGGCGCCCCTGTGATATAAACGAGCTATTTATTGTATTAACTCAAGAGT
AGAGACAAAGGTCAGCACGGGGAGAGAAGGATCCCCGTGGCATACAGATG
ATCATACCACTACACCAACTGCGTACCCCCCATATCGGCCATCCCAGACC
AGTATCTCTGCCCAGTAAGTATATACCACAAACGCTTATGTACGGAGATA
TCCGTATCTTCTATTACAAAATTTCCAAGTTGGATTTGACGTTCCGTCAC
ACCCTGACGTTCTACATATCTTCGATACATTATTTCGAGAGTCGGATTTG
GAGTTCTGTCACACCCTGGGTTTCAATGTATCTGCATTTATTTGCTCATT
TTTTTTGTCGAAACTCTGTATTCTTGGTGTCCCCTCCGCCGGGCTGGGTC
TTGAACCCCCCCTCCCCCCCCCCACGTCCCTTCTTTTTCGCACCCCCTCC
GCTGCTCGCAGATTTCATCCTGACAATTTTCGGTACGTGCGTCTACCTGT
ACAACGGCGTCGTTCTCCTTTTCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12538:838..4913-

>mRNA_L-elsbetiae_contig12538.2054.1 ID=mRNA_L-elsbetiae_contig12538.2054.1|Name=mRNA_L-elsbetiae_contig12538.2054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig12538:838..4913- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCGCCGTCTTCTGGGACGGCATTCTCATCACGGGGGGGTACTTTTG
GGTGGCAAACAACAACAACCTTTCCGCCGTCTTCTGGGACGGCATTCTCA
TCACGGGGGGGTACTTTTGGGTGGCAAACAACAACAACCCGAGCCATGAC
CGCTGGATCACGCTGTCGTTTGGAGCTACCCAGACCGTGGCGGGCATGCT
CATGGCCGTAGCGGTGGCGTTTACCATGACGGGGGAGAGGTTTGCAAGCC
TCAGGGTCTGCCTCGGGACGAGCCAGCGCGTCAAATTTCCCGAGCCATGA
CCGCTGGATCACGCTGTCGTTTGGAGCTACCCAGACCGTGGCGGGCATGC
TCATGGCCGTAGCGGTGGCGTTTACCATGACGGGGGAGAGGTTTGCAAGC
CTCAGGGTCTGCCTCGGGACGAGCCAGCGCGTCAAATTTCATTTCATCCT
GACAATTTTCGGTACGTGCGTCTACCTGTACAACGGCGTCGTTCTCCTTT
TCGACATTTCATCCTGACAATTTTCGGTACGTGCGTCTACCTGTACAACG
GCGTCGTTCTCCTTTTCGAC
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